Wall clock time and date at job start Mon Mar 30 2020 06:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38490 * 120.10695 * 2 1 4 4 O 1.35906 * 119.98003 * 359.97438 * 3 2 1 5 5 C 1.42902 * 117.00320 * 174.87740 * 4 3 2 6 6 H 1.09000 * 109.46773 * 322.60295 * 5 4 3 7 7 C 1.53000 * 109.46914 * 82.59863 * 5 4 3 8 8 C 1.52999 * 109.47489 * 202.60247 * 5 4 3 9 9 C 1.50693 * 109.47120 * 64.99789 * 8 5 4 10 10 H 1.08000 * 120.00496 * 0.02562 * 9 8 5 11 11 C 1.37884 * 120.00118 * 179.97438 * 9 8 5 12 12 N 1.31515 * 119.99580 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00295 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47086 * 59.99778 * 13 11 9 15 15 H 1.48497 * 109.47331 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47294 * 300.00369 * 13 11 9 17 17 C 1.38813 * 120.03609 * 180.24616 * 3 2 1 18 18 C 1.38301 * 120.24848 * 359.45474 * 17 3 2 19 19 C 1.37951 * 120.21059 * 0.54791 * 18 17 3 20 20 C 1.39537 * 120.10708 * 179.97438 * 2 1 3 21 21 C 1.47739 * 120.12583 * 0.04199 * 20 2 1 22 22 O 1.21475 * 119.99575 * 5.85807 * 21 20 2 23 23 O 1.34709 * 120.00503 * 185.85312 * 21 20 2 24 24 H 1.09003 * 109.47018 * 96.85521 * 1 2 3 25 25 H 1.09000 * 109.46865 * 216.85159 * 1 2 3 26 26 H 1.08999 * 109.46922 * 336.85267 * 1 2 3 27 27 H 1.08998 * 109.47333 * 300.00338 * 7 5 4 28 28 H 1.09000 * 109.47047 * 60.00601 * 7 5 4 29 29 H 1.08995 * 109.46820 * 180.02562 * 7 5 4 30 30 H 1.08996 * 109.46918 * 305.00028 * 8 5 4 31 31 H 1.08994 * 109.46968 * 185.00197 * 8 5 4 32 32 H 0.96997 * 119.99740 * 179.97438 * 12 11 9 33 33 H 1.08002 * 119.87363 * 179.70009 * 17 3 2 34 34 H 1.07996 * 119.89253 * 180.26946 * 18 17 3 35 35 H 1.08003 * 120.01709 * 179.74647 * 19 18 17 36 36 H 0.96695 * 117.00101 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2017 1.1981 0.0000 4 8 1.5239 2.3761 -0.0005 5 6 2.2995 3.5709 0.1132 6 1 3.1309 3.4006 0.7972 7 6 2.8430 3.9591 -1.2634 8 6 1.4196 4.7009 0.6514 9 6 0.9843 4.3730 2.0563 10 1 1.3036 3.4510 2.5193 11 6 0.1791 5.2505 2.7511 12 7 -0.2093 6.3735 2.1875 13 14 -0.3599 4.8444 4.4929 14 1 0.8369 4.6931 5.3589 15 1 -1.2140 5.9411 5.0152 16 1 -1.1316 3.5756 4.4892 17 6 3.5898 1.1964 -0.0052 18 6 4.2850 0.0008 0.0010 19 6 3.6034 -1.1985 0.0010 20 6 2.2069 -1.2071 0.0005 21 6 1.4734 -2.4896 0.0002 22 8 0.2635 -2.4972 -0.1080 23 8 2.1463 -3.6505 0.1197 24 1 -0.3633 -0.1227 -1.0204 25 1 -0.3633 -0.8223 0.6163 26 1 -0.3633 0.9449 0.4040 27 1 3.4698 3.1540 -1.6468 28 1 2.0116 4.1294 -1.9474 29 1 3.4349 4.8701 -1.1765 30 1 0.5414 4.8118 0.0154 31 1 1.9858 5.6323 0.6544 32 1 -0.7760 6.9906 2.6762 33 1 4.1289 2.1322 -0.0101 34 1 5.3650 0.0062 0.0014 35 1 4.1495 -2.1303 0.0017 36 1 1.6231 -4.4637 0.1138 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710003997.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:24 Heat of formation + Delta-G solvation = -134.432270 kcal Electronic energy + Delta-G solvation = -19826.222905 eV Core-core repulsion = 16660.594100 eV Total energy + Delta-G solvation = -3165.628805 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.77221 -40.76068 -38.50214 -37.15040 -35.48044 -33.98428 -33.04378 -31.32545 -29.39006 -28.04575 -25.54335 -25.25935 -23.28277 -22.41883 -21.19213 -19.44624 -18.65412 -18.53370 -17.38239 -16.94766 -16.85140 -16.54066 -16.31641 -16.01026 -15.09760 -14.74731 -14.43674 -14.14464 -14.09875 -13.79424 -13.56164 -13.40401 -13.34896 -13.07654 -12.80542 -12.66497 -12.52619 -12.49776 -12.37917 -12.03604 -11.79943 -11.30986 -11.17239 -11.08155 -10.58954 -9.97829 -9.06135 -8.21668 -6.30164 -0.36245 0.42264 1.37011 1.39944 1.47475 1.52549 1.91336 2.39224 2.56384 2.74339 3.13319 3.76024 3.88333 4.01766 4.04308 4.13375 4.21925 4.35847 4.45550 4.58571 4.74394 4.75737 4.78757 4.82316 5.01780 5.19931 5.20078 5.27750 5.36193 5.39378 5.41876 5.49472 5.63263 5.75718 5.79124 6.18118 6.64786 6.81586 6.99263 7.37244 8.89784 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.020586 B = 0.005463 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.799633 B = 5124.028713 C = 5844.304986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.083 4.083 3 C 0.104 3.896 4 O -0.315 6.315 5 C 0.093 3.907 6 H 0.070 0.930 7 C -0.169 4.169 8 C 0.029 3.971 9 C -0.530 4.530 10 H 0.050 0.950 11 C 0.006 3.994 12 N -0.930 5.930 13 Si 0.955 3.045 14 H -0.264 1.264 15 H -0.280 1.280 16 H -0.276 1.276 17 C -0.177 4.177 18 C -0.090 4.090 19 C -0.094 4.094 20 C -0.113 4.113 21 C 0.533 3.467 22 O -0.535 6.535 23 O -0.498 6.498 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.083 0.917 30 H -0.003 1.003 31 H 0.028 0.972 32 H 0.264 0.736 33 H 0.147 0.853 34 H 0.171 0.829 35 H 0.167 0.833 36 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.867 -16.846 -5.527 20.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.084 4.084 3 C 0.058 3.942 4 O -0.229 6.229 5 C 0.038 3.962 6 H 0.088 0.912 7 C -0.226 4.226 8 C -0.008 4.008 9 C -0.568 4.568 10 H 0.069 0.931 11 C -0.192 4.192 12 N -0.570 5.570 13 Si 0.780 3.220 14 H -0.189 1.189 15 H -0.205 1.205 16 H -0.202 1.202 17 C -0.196 4.196 18 C -0.108 4.108 19 C -0.112 4.112 20 C -0.114 4.114 21 C 0.379 3.621 22 O -0.427 6.427 23 O -0.312 6.312 24 H 0.089 0.911 25 H 0.101 0.899 26 H 0.067 0.933 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.015 0.985 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.165 0.835 34 H 0.189 0.811 35 H 0.184 0.816 36 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 10.466 -16.296 -5.538 20.144 hybrid contribution -1.070 -0.043 0.844 1.364 sum 9.396 -16.339 -4.694 19.424 Atomic orbital electron populations 1.20768 0.90588 1.02159 1.02628 1.19393 0.96853 0.90038 1.02101 1.19052 0.91670 0.86151 0.97313 1.86224 1.37182 1.12579 1.86926 1.22633 0.93834 0.82720 0.97038 0.91209 1.22349 1.01476 1.02930 0.95886 1.19102 0.94459 0.92345 0.94892 1.21416 1.30835 1.04560 0.99993 0.93143 1.25811 0.96147 0.94904 1.02365 1.70049 1.36704 1.11070 1.39176 0.85651 0.78644 0.77740 0.79959 1.18923 1.20474 1.20157 1.21903 0.92188 1.01542 1.03925 1.21330 1.01861 0.90171 0.97420 1.21585 0.91351 1.00296 0.98015 1.18735 0.94588 0.88741 1.09324 1.20723 0.84806 0.84839 0.71719 1.90858 1.16524 1.88098 1.47256 1.84492 1.45068 1.17025 1.84617 0.91138 0.89862 0.93334 0.90592 0.92771 0.89835 0.98480 0.95433 0.92706 0.83495 0.81139 0.81580 0.70414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.84 8.57 71.24 0.61 -3.23 16 2 C -0.08 -2.85 5.93 -19.49 -0.12 -2.96 16 3 C 0.10 3.71 6.54 22.47 0.15 3.85 16 4 O -0.32 -13.47 8.49 -92.49 -0.79 -14.26 16 5 C 0.09 3.78 2.18 30.59 0.07 3.84 16 6 H 0.07 2.67 6.46 -2.39 -0.02 2.65 16 7 C -0.17 -5.36 9.11 71.98 0.66 -4.71 16 8 C 0.03 1.50 4.68 29.85 0.14 1.64 16 9 C -0.53 -30.40 8.88 25.60 0.23 -30.17 16 10 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 11 C 0.01 0.33 5.46 84.66 0.46 0.80 16 12 N -0.93 -56.40 13.29 21.45 0.28 -56.12 16 13 Si 0.96 45.29 29.54 68.60 2.03 47.31 16 14 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 15 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 16 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 17 C -0.18 -4.87 8.14 22.42 0.18 -4.69 16 18 C -0.09 -1.85 10.03 22.22 0.22 -1.62 16 19 C -0.09 -1.98 9.61 22.54 0.22 -1.77 16 20 C -0.11 -3.11 5.87 -20.11 -0.12 -3.23 16 21 C 0.53 13.46 8.21 70.33 0.58 14.04 16 22 O -0.54 -16.61 14.13 19.92 0.28 -16.33 16 23 O -0.50 -7.90 12.69 -56.19 -0.71 -8.61 16 24 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.08 2.99 5.87 -2.39 -0.01 2.98 16 26 H 0.05 1.99 7.33 -2.39 -0.02 1.97 16 27 H 0.08 1.99 6.64 -2.39 -0.02 1.97 16 28 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 29 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 31 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 33 H 0.15 3.68 5.31 -2.91 -0.02 3.67 16 34 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 35 H 0.17 2.41 7.62 -2.91 -0.02 2.38 16 36 H 0.43 2.76 9.11 -74.06 -0.67 2.09 16 Total: -1.00 -71.85 305.83 4.80 -67.05 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.43 Total: 9.16 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: 3.27 Total: -28.21 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: 0.28 Total: -56.12 kcal Atomic # 8 Polarization: -37.98 SS G_CDS: -1.22 Total: -39.20 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -71.85 4.80 -67.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710003997.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.383 kcal (2) G-P(sol) polarization free energy of solvation -71.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds