Wall clock time and date at job start Mon Mar 30 2020 06:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38298 * 119.86792 * 2 1 4 4 C 1.37949 * 120.20687 * 179.97438 * 3 2 1 5 5 C 1.39654 * 119.96384 * 0.02562 * 4 3 2 6 6 C 1.47740 * 120.12697 * 180.02562 * 5 4 3 7 7 O 1.21470 * 120.00205 * 179.97438 * 6 5 4 8 8 O 1.34712 * 120.00030 * 359.97036 * 6 5 4 9 9 C 1.39542 * 119.75456 * 359.97438 * 5 4 3 10 10 C 1.38482 * 119.78274 * 0.02562 * 9 5 4 11 11 O 1.35911 * 119.97940 * 179.72382 * 10 9 5 12 12 C 1.42899 * 117.00098 * 354.58060 * 11 10 9 13 13 H 1.09002 * 109.47239 * 324.85491 * 12 11 10 14 14 C 1.53005 * 109.46817 * 84.85045 * 12 11 10 15 15 C 1.53003 * 109.47227 * 204.85115 * 12 11 10 16 16 C 1.50691 * 109.47186 * 65.00299 * 15 12 11 17 17 H 1.07998 * 119.99946 * 359.97438 * 16 15 12 18 18 C 1.37878 * 120.00129 * 179.97438 * 16 15 12 19 19 N 1.31517 * 119.99717 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00258 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46958 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47210 * 119.99843 * 20 18 16 23 23 H 1.48504 * 109.47065 * 240.00064 * 20 18 16 24 24 H 1.08994 * 109.46803 * 269.99403 * 1 2 3 25 25 H 1.08997 * 109.47067 * 30.00185 * 1 2 3 26 26 H 1.09006 * 109.46496 * 150.00005 * 1 2 3 27 27 H 1.07993 * 119.89750 * 0.02562 * 3 2 1 28 28 H 1.08007 * 120.02039 * 179.97438 * 4 3 2 29 29 H 0.96698 * 117.00397 * 180.02562 * 8 6 5 30 30 H 1.07999 * 120.11060 * 180.02562 * 9 5 4 31 31 H 1.08996 * 109.47364 * 299.99760 * 14 12 11 32 32 H 1.08993 * 109.47119 * 60.00227 * 14 12 11 33 33 H 1.08999 * 109.46683 * 180.02562 * 14 12 11 34 34 H 1.09000 * 109.46798 * 185.00479 * 15 12 11 35 35 H 1.08995 * 109.47267 * 304.99597 * 15 12 11 36 36 H 0.97005 * 119.99858 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1958 1.1993 0.0000 4 6 3.5753 1.2075 0.0005 5 6 4.2799 0.0017 0.0005 6 6 5.7573 0.0063 0.0017 7 8 6.3679 -1.0438 0.0021 8 8 6.4273 1.1750 0.0021 9 6 3.5834 -1.2074 0.0005 10 6 2.1986 -1.2036 0.0000 11 8 1.5162 -2.3789 -0.0057 12 6 2.2867 -3.5759 -0.1311 13 1 3.1389 -3.3925 -0.7855 14 6 2.7870 -4.0073 1.2490 15 6 1.4152 -4.6833 -0.7269 16 6 1.0235 -4.3122 -2.1339 17 1 1.3619 -3.3795 -2.5604 18 6 0.2330 -5.1633 -2.8767 19 7 -0.1786 -6.2994 -2.3575 20 14 -0.2532 -4.7029 -4.6206 21 1 0.3339 -3.3834 -4.9661 22 1 0.2526 -5.7325 -5.5637 23 1 -1.7330 -4.6266 -4.7181 24 1 -0.3633 -0.0001 1.0276 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3632 -0.8901 -0.5139 27 1 1.6520 2.1323 0.0004 28 1 4.1101 2.1458 0.0001 29 1 7.3931 1.1274 0.0025 30 1 4.1226 -2.1432 0.0010 31 1 3.4078 -3.2184 1.6734 32 1 1.9348 -4.1907 1.9033 33 1 3.3750 -4.9200 1.1532 34 1 1.9749 -5.6185 -0.7402 35 1 0.5180 -4.8057 -0.1202 36 1 -0.7350 -6.8980 -2.8800 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710004924.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:26 Heat of formation + Delta-G solvation = -121.009088 kcal Electronic energy + Delta-G solvation = -19784.994430 eV Core-core repulsion = 16619.947697 eV Total energy + Delta-G solvation = -3165.046733 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.55974 -39.56536 -37.30301 -36.14340 -33.62050 -32.77301 -31.43198 -29.79264 -27.63059 -27.37524 -23.78589 -23.26073 -22.49927 -20.96291 -19.98133 -18.30729 -17.69767 -16.40042 -15.98554 -15.69428 -15.64363 -15.23996 -14.64944 -14.51387 -14.00587 -13.39612 -13.23552 -13.10670 -12.64563 -12.11374 -11.99603 -11.90438 -11.84159 -11.61814 -11.44828 -11.38001 -11.12277 -10.92586 -10.77731 -10.58615 -10.43078 -10.05142 -9.42631 -9.12905 -8.81783 -8.40966 -7.84166 -6.03624 -4.05058 0.73049 1.54184 2.58097 2.94158 3.30396 3.38040 3.43078 3.78104 3.88395 4.44561 4.83150 4.95607 5.11819 5.18498 5.33512 5.40173 5.60791 5.62086 5.74431 5.79468 5.84189 5.91968 5.95636 6.20182 6.27892 6.31873 6.36098 6.42022 6.57027 6.64710 6.71333 6.85883 7.46609 7.54952 7.83039 7.92930 8.04382 8.33453 8.98710 9.58496 11.07774 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.019483 B = 0.005427 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.808228 B = 5158.170479 C = 5453.324845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.086 4.086 3 C -0.102 4.102 4 C -0.109 4.109 5 C -0.102 4.102 6 C 0.528 3.472 7 O -0.513 6.513 8 O -0.513 6.513 9 C -0.148 4.148 10 C 0.139 3.861 11 O -0.283 6.283 12 C 0.083 3.917 13 H 0.063 0.937 14 C -0.178 4.178 15 C 0.026 3.974 16 C -0.513 4.513 17 H 0.056 0.944 18 C 0.058 3.942 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.283 1.283 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.411 0.589 30 H 0.146 0.854 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.039 0.961 35 H 0.030 0.970 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.166 15.033 6.479 17.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.087 4.087 3 C -0.120 4.120 4 C -0.127 4.127 5 C -0.103 4.103 6 C 0.372 3.628 7 O -0.402 6.402 8 O -0.325 6.325 9 C -0.167 4.167 10 C 0.091 3.909 11 O -0.195 6.195 12 C 0.028 3.972 13 H 0.081 0.919 14 C -0.235 4.235 15 C -0.011 4.011 16 C -0.552 4.552 17 H 0.074 0.926 18 C -0.143 4.143 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.209 1.209 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.103 0.897 27 H 0.151 0.849 28 H 0.151 0.849 29 H 0.269 0.731 30 H 0.163 0.837 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.583 14.546 6.452 17.221 hybrid contribution 0.683 0.015 -1.002 1.213 sum 7.266 14.561 5.449 17.162 Atomic orbital electron populations 1.20719 0.90039 1.03627 1.02458 1.19627 0.97123 0.90410 1.01540 1.20807 0.93596 0.97049 1.00507 1.21174 0.94157 0.96982 1.00433 1.18691 0.88346 0.94565 1.08682 1.21004 0.89005 0.80814 0.71948 1.90892 1.70059 1.33131 1.46148 1.84562 1.26630 1.35259 1.86048 1.21461 0.93501 0.98460 1.03311 1.18845 0.89616 0.87733 0.94689 1.86302 1.35782 1.11734 1.85675 1.22954 0.95409 0.83745 0.95092 0.91857 1.22415 1.01452 1.01471 0.98188 1.19271 0.95006 0.90841 0.95936 1.21145 1.31244 1.04722 0.98063 0.92567 1.24972 0.96008 0.94979 0.98343 1.69961 1.36057 1.10377 1.37133 0.86535 0.78298 0.78527 0.84693 1.19730 1.21022 1.20940 0.91157 0.91742 0.89735 0.84923 0.84862 0.73065 0.83661 0.93335 0.91799 0.91202 0.94258 0.95181 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 9.78 36.01 0.35 -1.18 16 2 C -0.09 -1.30 5.90 -104.38 -0.62 -1.92 16 3 C -0.10 -1.26 9.67 -39.67 -0.38 -1.64 16 4 C -0.11 -1.37 9.61 -39.16 -0.38 -1.74 16 5 C -0.10 -1.51 5.87 -105.00 -0.62 -2.13 16 6 C 0.53 7.42 8.27 34.61 0.29 7.70 16 7 O -0.51 -8.70 17.13 -19.24 -0.33 -9.03 16 8 O -0.51 -5.11 12.68 -40.53 -0.51 -5.62 16 9 C -0.15 -2.52 7.78 -39.01 -0.30 -2.83 16 10 C 0.14 2.47 6.57 -39.28 -0.26 2.21 16 11 O -0.28 -5.80 8.58 -19.46 -0.17 -5.97 16 12 C 0.08 1.73 2.17 -26.73 -0.06 1.68 16 13 H 0.06 1.32 6.32 -51.93 -0.33 1.00 16 14 C -0.18 -3.09 9.17 37.16 0.34 -2.75 16 15 C 0.03 0.66 4.68 -27.89 -0.13 0.53 16 16 C -0.51 -14.37 8.88 -34.44 -0.31 -14.68 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -26.52 13.29 55.43 0.74 -25.79 16 20 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 26 H 0.08 1.38 7.51 -51.93 -0.39 0.99 16 27 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 28 H 0.13 1.35 7.61 -52.48 -0.40 0.95 16 29 H 0.41 2.15 9.11 45.56 0.42 2.56 16 30 H 0.15 2.58 5.00 -52.49 -0.26 2.32 16 31 H 0.05 0.77 6.89 -51.93 -0.36 0.41 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 311.70 15.07 4.70 4.70 Total: -1.00 -32.39 311.70 -6.58 -38.98 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -3.82 Total: 1.22 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -2.17 Total: -15.19 kcal Atomic # 7 Polarization: -26.52 SS G_CDS: 0.74 Total: -25.79 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -1.01 Total: -20.62 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.39 -6.58 -38.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710004924.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.032 kcal (2) G-P(sol) polarization free energy of solvation -32.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds