Wall clock time and date at job start Mon Mar 30 2020 06:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38298 * 119.86792 * 2 1 4 4 C 1.37949 * 120.20687 * 179.97438 * 3 2 1 5 5 C 1.39654 * 119.96384 * 0.02562 * 4 3 2 6 6 C 1.47740 * 120.12697 * 180.02562 * 5 4 3 7 7 O 1.21470 * 120.00205 * 179.97438 * 6 5 4 8 8 O 1.34712 * 120.00030 * 359.97036 * 6 5 4 9 9 C 1.39542 * 119.75456 * 359.97438 * 5 4 3 10 10 C 1.38482 * 119.78274 * 0.02562 * 9 5 4 11 11 O 1.35911 * 119.97940 * 179.72382 * 10 9 5 12 12 C 1.42899 * 117.00098 * 354.58060 * 11 10 9 13 13 H 1.09002 * 109.47239 * 324.85491 * 12 11 10 14 14 C 1.53005 * 109.46817 * 84.85045 * 12 11 10 15 15 C 1.53003 * 109.47227 * 204.85115 * 12 11 10 16 16 C 1.50691 * 109.47186 * 65.00299 * 15 12 11 17 17 H 1.07998 * 119.99946 * 359.97438 * 16 15 12 18 18 C 1.37878 * 120.00129 * 179.97438 * 16 15 12 19 19 N 1.31517 * 119.99717 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00258 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46958 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47210 * 119.99843 * 20 18 16 23 23 H 1.48504 * 109.47065 * 240.00064 * 20 18 16 24 24 H 1.08994 * 109.46803 * 269.99403 * 1 2 3 25 25 H 1.08997 * 109.47067 * 30.00185 * 1 2 3 26 26 H 1.09006 * 109.46496 * 150.00005 * 1 2 3 27 27 H 1.07993 * 119.89750 * 0.02562 * 3 2 1 28 28 H 1.08007 * 120.02039 * 179.97438 * 4 3 2 29 29 H 0.96698 * 117.00397 * 180.02562 * 8 6 5 30 30 H 1.07999 * 120.11060 * 180.02562 * 9 5 4 31 31 H 1.08996 * 109.47364 * 299.99760 * 14 12 11 32 32 H 1.08993 * 109.47119 * 60.00227 * 14 12 11 33 33 H 1.08999 * 109.46683 * 180.02562 * 14 12 11 34 34 H 1.09000 * 109.46798 * 185.00479 * 15 12 11 35 35 H 1.08995 * 109.47267 * 304.99597 * 15 12 11 36 36 H 0.97005 * 119.99858 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1958 1.1993 0.0000 4 6 3.5753 1.2075 0.0005 5 6 4.2799 0.0017 0.0005 6 6 5.7573 0.0063 0.0017 7 8 6.3679 -1.0438 0.0021 8 8 6.4273 1.1750 0.0021 9 6 3.5834 -1.2074 0.0005 10 6 2.1986 -1.2036 0.0000 11 8 1.5162 -2.3789 -0.0057 12 6 2.2867 -3.5759 -0.1311 13 1 3.1389 -3.3925 -0.7855 14 6 2.7870 -4.0073 1.2490 15 6 1.4152 -4.6833 -0.7269 16 6 1.0235 -4.3122 -2.1339 17 1 1.3619 -3.3795 -2.5604 18 6 0.2330 -5.1633 -2.8767 19 7 -0.1786 -6.2994 -2.3575 20 14 -0.2532 -4.7029 -4.6206 21 1 0.3339 -3.3834 -4.9661 22 1 0.2526 -5.7325 -5.5637 23 1 -1.7330 -4.6266 -4.7181 24 1 -0.3633 -0.0001 1.0276 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3632 -0.8901 -0.5139 27 1 1.6520 2.1323 0.0004 28 1 4.1101 2.1458 0.0001 29 1 7.3931 1.1274 0.0025 30 1 4.1226 -2.1432 0.0010 31 1 3.4078 -3.2184 1.6734 32 1 1.9348 -4.1907 1.9033 33 1 3.3750 -4.9200 1.1532 34 1 1.9749 -5.6185 -0.7402 35 1 0.5180 -4.8057 -0.1202 36 1 -0.7350 -6.8980 -2.8800 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710004924.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:25 Heat of formation + Delta-G solvation = -141.494516 kcal Electronic energy + Delta-G solvation = -19785.882745 eV Core-core repulsion = 16619.947697 eV Total energy + Delta-G solvation = -3165.935047 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.71524 -40.77701 -38.61286 -37.12813 -35.50017 -34.14455 -33.10489 -30.99086 -29.41498 -28.61637 -25.43430 -24.67228 -23.79211 -22.13159 -21.47433 -19.52539 -18.78523 -18.54230 -17.29910 -16.97089 -16.73115 -16.55516 -16.25928 -16.07951 -15.14761 -14.75740 -14.54826 -14.32149 -14.12209 -13.80593 -13.49575 -13.39989 -13.13309 -13.05323 -12.80110 -12.69283 -12.56278 -12.51213 -12.31757 -12.13454 -11.83523 -11.67443 -11.34146 -11.10637 -10.60527 -9.92814 -9.11574 -8.22423 -6.31534 -0.39726 0.40725 1.37345 1.37762 1.48145 1.50949 1.98056 2.38957 2.39219 2.73468 3.12166 3.75270 3.86489 3.96341 4.04465 4.14423 4.17247 4.32346 4.39938 4.53351 4.74378 4.77105 4.79808 4.86533 4.95456 5.11433 5.22245 5.24901 5.31020 5.36167 5.42547 5.50083 5.54217 5.74219 5.80848 6.16521 6.57764 6.79540 6.93480 7.35992 8.89551 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.019483 B = 0.005427 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.808228 B = 5158.170479 C = 5453.324845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.093 4.093 3 C -0.089 4.089 4 C -0.088 4.088 5 C -0.117 4.117 6 C 0.535 3.465 7 O -0.551 6.551 8 O -0.495 6.495 9 C -0.164 4.164 10 C 0.102 3.898 11 O -0.307 6.307 12 C 0.094 3.906 13 H 0.055 0.945 14 C -0.167 4.167 15 C 0.031 3.969 16 C -0.529 4.529 17 H 0.049 0.951 18 C 0.005 3.995 19 N -0.930 5.930 20 Si 0.960 3.040 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.275 1.275 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.048 0.952 27 H 0.177 0.823 28 H 0.169 0.831 29 H 0.434 0.566 30 H 0.127 0.873 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.023 0.977 35 H 0.004 0.996 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.558 18.390 6.154 20.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.094 4.094 3 C -0.106 4.106 4 C -0.106 4.106 5 C -0.118 4.118 6 C 0.381 3.619 7 O -0.444 6.444 8 O -0.309 6.309 9 C -0.183 4.183 10 C 0.056 3.944 11 O -0.220 6.220 12 C 0.038 3.962 13 H 0.073 0.927 14 C -0.224 4.224 15 C -0.006 4.006 16 C -0.567 4.567 17 H 0.068 0.932 18 C -0.193 4.193 19 N -0.570 5.570 20 Si 0.785 3.215 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.200 1.200 24 H 0.101 0.899 25 H 0.114 0.886 26 H 0.067 0.933 27 H 0.195 0.805 28 H 0.186 0.814 29 H 0.296 0.704 30 H 0.145 0.855 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.041 0.959 35 H 0.023 0.977 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.005 17.941 6.135 20.213 hybrid contribution 0.613 -0.867 -0.870 1.373 sum 7.617 17.073 5.265 19.423 Atomic orbital electron populations 1.20728 0.89292 1.03348 1.03218 1.20002 0.97953 0.90406 1.01038 1.21279 0.93700 0.97435 0.98210 1.21608 0.94377 0.97230 0.97419 1.18883 0.89167 0.94694 1.09038 1.20867 0.88828 0.81127 0.71073 1.90885 1.70718 1.34714 1.48082 1.84490 1.28626 1.32767 1.85004 1.21366 0.93321 0.98927 1.04721 1.19176 0.90238 0.87463 0.97481 1.86207 1.36464 1.12464 1.86895 1.22563 0.93836 0.83269 0.96519 0.92674 1.22298 1.01668 1.02244 0.96208 1.19096 0.94450 0.92094 0.94997 1.21429 1.31451 1.04493 0.99376 0.93248 1.25843 0.95900 0.94844 1.02690 1.70072 1.36697 1.11369 1.38877 0.85475 0.78206 0.78416 0.79444 1.19251 1.20141 1.20045 0.89894 0.88591 0.93322 0.80544 0.81354 0.70395 0.85546 0.91814 0.91728 0.90368 0.95936 0.97749 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.83 9.78 71.24 0.70 -2.14 16 2 C -0.09 -2.67 5.90 -19.71 -0.12 -2.79 16 3 C -0.09 -1.84 9.67 22.22 0.21 -1.62 16 4 C -0.09 -1.86 9.61 22.54 0.22 -1.65 16 5 C -0.12 -3.27 5.87 -20.11 -0.12 -3.39 16 6 C 0.54 14.14 8.27 70.33 0.58 14.72 16 7 O -0.55 -18.57 17.13 19.93 0.34 -18.23 16 8 O -0.50 -8.15 12.68 -56.22 -0.71 -8.86 16 9 C -0.16 -5.65 7.78 22.64 0.18 -5.48 16 10 C 0.10 3.69 6.57 22.46 0.15 3.84 16 11 O -0.31 -13.19 8.58 -92.55 -0.79 -13.99 16 12 C 0.09 4.12 2.17 30.60 0.07 4.19 16 13 H 0.06 2.46 6.32 -2.39 -0.02 2.45 16 14 C -0.17 -6.02 9.17 71.98 0.66 -5.36 16 15 C 0.03 1.64 4.68 29.85 0.14 1.78 16 16 C -0.53 -30.80 8.88 25.60 0.23 -30.58 16 17 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 18 C 0.01 0.30 5.46 84.65 0.46 0.76 16 19 N -0.93 -56.53 13.29 21.45 0.28 -56.24 16 20 Si 0.96 45.16 29.54 68.60 2.03 47.19 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 23 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 24 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.10 1.83 8.08 -2.39 -0.02 1.81 16 26 H 0.05 1.61 7.51 -2.38 -0.02 1.59 16 27 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 28 H 0.17 2.41 7.61 -2.91 -0.02 2.38 16 29 H 0.43 3.07 9.11 -74.06 -0.67 2.39 16 30 H 0.13 4.73 5.00 -2.91 -0.01 4.71 16 31 H 0.06 2.08 6.89 -2.39 -0.02 2.07 16 32 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 Total: -1.00 -73.13 311.70 4.93 -68.20 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.43 Total: 9.64 kcal Atomic # 6 Polarization: -31.06 SS G_CDS: 3.36 Total: -27.71 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.28 Total: -56.24 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -1.17 Total: -41.08 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -73.13 4.93 -68.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710004924.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.291 kcal (2) G-P(sol) polarization free energy of solvation -73.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds