Wall clock time and date at job start Mon Mar 30 2020 07:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38122 * 120.03424 * 2 1 4 4 C 1.38263 * 120.06847 * 180.02562 * 3 2 1 5 5 N 1.48010 * 119.92269 * 179.97438 * 4 3 2 6 6 O 1.21794 * 120.00195 * 353.57036 * 5 4 3 7 7 O 1.21807 * 119.99906 * 173.57672 * 5 4 3 8 8 C 1.38304 * 120.15421 * 359.97438 * 4 3 2 9 9 C 1.50699 * 119.96415 * 179.97438 * 8 4 3 10 10 C 1.38085 * 120.07245 * 359.72600 * 8 4 3 11 11 C 1.38887 * 120.03469 * 180.02562 * 2 1 3 12 12 N 1.39676 * 120.07719 * 359.97270 * 11 2 1 13 13 C 1.46890 * 111.00361 * 243.95810 * 12 11 2 14 14 C 1.46907 * 110.99373 * 120.00228 * 12 11 2 15 15 C 1.50705 * 109.46707 * 190.00395 * 14 12 11 16 16 H 1.08001 * 119.99768 * 359.97438 * 15 14 12 17 17 C 1.37871 * 119.99669 * 179.72700 * 15 14 12 18 18 N 1.31516 * 120.00133 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99979 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47020 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47076 * 119.99989 * 19 17 15 22 22 H 1.48494 * 109.47248 * 240.00070 * 19 17 15 23 23 H 1.09004 * 109.47435 * 269.97899 * 1 2 3 24 24 H 1.09000 * 109.47021 * 29.97525 * 1 2 3 25 25 H 1.08996 * 109.47615 * 149.97595 * 1 2 3 26 26 H 1.07999 * 119.96685 * 0.02562 * 3 2 1 27 27 H 1.09003 * 109.46973 * 83.10569 * 9 8 4 28 28 H 1.09007 * 109.46820 * 203.10091 * 9 8 4 29 29 H 1.08998 * 109.47322 * 323.10038 * 9 8 4 30 30 H 1.08004 * 120.04043 * 180.28032 * 10 8 4 31 31 H 1.09006 * 109.47311 * 296.04526 * 13 12 11 32 32 H 1.08995 * 109.47651 * 56.05021 * 13 12 11 33 33 H 1.09002 * 109.47087 * 176.05003 * 13 12 11 34 34 H 1.09000 * 109.47114 * 70.00637 * 14 12 11 35 35 H 1.08996 * 109.47325 * 309.99931 * 14 12 11 36 36 H 0.97003 * 120.00089 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5810 1.1966 -0.0005 5 7 4.3185 2.4798 -0.0011 6 8 3.7133 3.5301 -0.1192 7 8 5.5309 2.4855 0.1164 8 6 4.2764 0.0011 -0.0005 9 6 5.7834 0.0070 -0.0017 10 6 3.5915 -1.1979 0.0057 11 6 2.2022 -1.2024 -0.0005 12 7 1.5062 -2.4134 -0.0005 13 6 1.7663 -3.1701 1.2313 14 6 1.8380 -3.2112 -1.1886 15 6 0.8980 -4.3852 -1.2838 16 1 0.1311 -4.5249 -0.5363 17 6 1.0137 -5.2781 -2.3280 18 7 1.9442 -5.1049 -3.2412 19 14 -0.1510 -6.7338 -2.4457 20 1 -1.0990 -6.7028 -1.3031 21 1 -0.9089 -6.6594 -3.7206 22 1 0.6293 -7.9965 -2.4067 23 1 -0.3634 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3634 -0.8897 -0.5142 26 1 1.6584 2.1311 0.0004 27 1 6.1470 0.1323 1.0182 28 1 6.1501 -0.9371 -0.4048 29 1 6.1431 0.8299 -0.6194 30 1 4.1351 -2.1311 0.0103 31 1 2.8213 -3.4408 1.2756 32 1 1.5121 -2.5563 2.0954 33 1 1.1586 -4.0749 1.2370 34 1 2.8634 -3.5723 -1.1090 35 1 1.7387 -2.5930 -2.0808 36 1 2.0259 -5.7333 -3.9756 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710638188.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:10 Heat of formation + Delta-G solvation = 23.412073 kcal Electronic energy + Delta-G solvation = -19925.196256 eV Core-core repulsion = 16798.704846 eV Total energy + Delta-G solvation = -3126.491410 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.09074 -39.99855 -36.67036 -36.44290 -33.80567 -32.77356 -30.76950 -29.17547 -27.52624 -26.66064 -25.54229 -24.04768 -22.89859 -21.45839 -20.55952 -18.60318 -18.02659 -17.44847 -16.70278 -16.07019 -15.65841 -14.95441 -14.49230 -14.18152 -13.52764 -13.43425 -13.14738 -13.06077 -12.94553 -12.66424 -12.19275 -11.82613 -11.73276 -11.55506 -11.32877 -11.25138 -11.16937 -11.00810 -10.86415 -10.77100 -10.51457 -10.21076 -9.52301 -9.03379 -8.65474 -8.64371 -7.83131 -6.22503 -4.25993 0.05181 1.11465 1.53737 1.61381 3.19368 3.27682 3.30932 3.38640 4.20030 4.41948 4.49736 4.51477 4.95981 5.02883 5.13694 5.29296 5.41074 5.56915 5.59434 5.68831 5.77722 5.87374 5.88027 5.96730 5.99106 6.08472 6.23417 6.43216 6.50230 6.57513 6.70182 6.95593 7.01302 7.55942 7.67455 7.83960 7.87647 8.24050 8.80443 9.39521 10.88221 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.030747 B = 0.004782 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.449483 B = 5854.170378 C = 6213.976237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.077 4.077 3 C -0.052 4.052 4 C -0.065 4.065 5 N 0.041 4.959 6 O -0.181 6.181 7 O -0.171 6.171 8 C -0.013 4.013 9 C -0.129 4.129 10 C -0.155 4.155 11 C 0.177 3.823 12 N -0.513 5.513 13 C 0.042 3.958 14 C 0.197 3.803 15 C -0.514 4.514 16 H 0.068 0.932 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.901 3.099 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.284 1.284 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.094 0.906 26 H 0.149 0.851 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.143 0.857 31 H 0.022 0.978 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.000 1.000 35 H 0.033 0.967 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.957 8.530 7.543 11.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.079 4.079 3 C -0.071 4.071 4 C -0.149 4.149 5 N 0.554 4.446 6 O -0.393 6.393 7 O -0.384 6.384 8 C -0.015 4.015 9 C -0.186 4.186 10 C -0.175 4.175 11 C 0.081 3.919 12 N -0.235 5.235 13 C -0.105 4.105 14 C 0.074 3.926 15 C -0.553 4.553 16 H 0.086 0.914 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.729 3.271 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.210 1.210 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.113 0.887 26 H 0.167 0.833 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.161 0.839 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.018 0.982 35 H 0.051 0.949 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.166 7.929 7.354 10.877 hybrid contribution 0.551 -0.710 -0.266 0.937 sum 1.717 7.219 7.088 10.261 Atomic orbital electron populations 1.20676 0.88857 1.03880 1.02604 1.19863 0.97680 0.90005 1.00338 1.20775 0.90623 0.99878 0.95859 1.20812 0.92302 0.82561 1.19191 1.43587 1.00977 1.02902 0.97118 1.94500 1.69992 1.20646 1.54113 1.94437 0.96609 1.93868 1.53461 1.19679 0.97609 0.90295 0.93928 1.21263 0.89000 1.04270 1.04040 1.21833 0.95275 0.97364 1.03067 1.19509 0.89934 0.93306 0.89140 1.60063 1.55028 1.02811 1.05641 1.22283 0.99592 0.98665 0.89935 1.19910 0.95708 0.91838 0.85141 1.21093 1.16116 1.07854 1.10209 0.91420 1.24989 0.95734 0.98280 0.95381 1.69959 1.33031 1.37209 1.13175 0.86389 0.80665 0.81896 0.78187 1.19529 1.20863 1.20976 0.91164 0.92023 0.88718 0.83300 0.89801 0.90983 0.88655 0.83890 0.95905 0.93141 0.89491 0.98185 0.94875 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 9.77 36.01 0.35 -1.03 16 2 C -0.08 -1.17 5.90 -104.42 -0.62 -1.78 16 3 C -0.05 -0.74 9.21 -39.61 -0.36 -1.11 16 4 C -0.06 -1.00 6.83 -79.92 -0.55 -1.54 16 5 N 0.04 0.65 4.45 33.98 0.15 0.80 16 6 O -0.18 -2.96 18.46 -29.46 -0.54 -3.50 16 7 O -0.17 -2.71 15.35 -29.46 -0.45 -3.16 16 8 C -0.01 -0.19 5.88 -104.65 -0.62 -0.81 16 9 C -0.13 -1.64 8.67 36.01 0.31 -1.32 16 10 C -0.15 -2.48 8.33 -39.38 -0.33 -2.80 16 11 C 0.18 3.02 4.65 -83.79 -0.39 2.63 16 12 N -0.51 -9.81 3.67 -180.33 -0.66 -10.47 16 13 C 0.04 0.70 9.08 60.06 0.55 1.25 16 14 C 0.20 4.65 4.31 -4.97 -0.02 4.63 16 15 C -0.51 -13.23 8.52 -34.44 -0.29 -13.53 16 16 H 0.07 1.71 7.10 -52.49 -0.37 1.33 16 17 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 18 N -0.89 -25.16 13.29 55.43 0.74 -24.42 16 19 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 25 H 0.09 1.48 7.46 -51.93 -0.39 1.09 16 26 H 0.15 1.84 7.62 -52.49 -0.40 1.44 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.07 0.83 8.04 -51.92 -0.42 0.41 16 29 H 0.10 1.25 5.86 -51.93 -0.30 0.94 16 30 H 0.14 2.26 7.16 -52.48 -0.38 1.89 16 31 H 0.02 0.37 7.46 -51.93 -0.39 -0.02 16 32 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 33 H 0.09 1.55 6.86 -51.93 -0.36 1.19 16 34 H 0.00 0.01 7.49 -51.93 -0.39 -0.38 16 35 H 0.03 0.87 8.06 -51.93 -0.42 0.45 16 36 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 306.57 15.07 4.62 4.62 Total: -1.00 -27.90 306.57 -7.86 -35.76 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -4.63 Total: -0.99 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -2.06 Total: -13.96 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.23 Total: -34.09 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -1.00 Total: -6.67 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.90 -7.86 -35.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710638188.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.171 kcal (2) G-P(sol) polarization free energy of solvation -27.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds