Wall clock time and date at job start Mon Mar 30 2020 07:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38122 * 120.03424 * 2 1 4 4 C 1.38263 * 120.06847 * 180.02562 * 3 2 1 5 5 N 1.48010 * 119.92269 * 179.97438 * 4 3 2 6 6 O 1.21794 * 120.00195 * 353.57036 * 5 4 3 7 7 O 1.21807 * 119.99906 * 173.57672 * 5 4 3 8 8 C 1.38304 * 120.15421 * 359.97438 * 4 3 2 9 9 C 1.50699 * 119.96415 * 179.97438 * 8 4 3 10 10 C 1.38085 * 120.07245 * 359.72600 * 8 4 3 11 11 C 1.38887 * 120.03469 * 180.02562 * 2 1 3 12 12 N 1.39676 * 120.07719 * 359.97270 * 11 2 1 13 13 C 1.46890 * 111.00361 * 243.95810 * 12 11 2 14 14 C 1.46907 * 110.99373 * 120.00228 * 12 11 2 15 15 C 1.50705 * 109.46707 * 190.00395 * 14 12 11 16 16 H 1.08001 * 119.99768 * 359.97438 * 15 14 12 17 17 C 1.37871 * 119.99669 * 179.72700 * 15 14 12 18 18 N 1.31516 * 120.00133 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99979 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47020 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47076 * 119.99989 * 19 17 15 22 22 H 1.48494 * 109.47248 * 240.00070 * 19 17 15 23 23 H 1.09004 * 109.47435 * 269.97899 * 1 2 3 24 24 H 1.09000 * 109.47021 * 29.97525 * 1 2 3 25 25 H 1.08996 * 109.47615 * 149.97595 * 1 2 3 26 26 H 1.07999 * 119.96685 * 0.02562 * 3 2 1 27 27 H 1.09003 * 109.46973 * 83.10569 * 9 8 4 28 28 H 1.09007 * 109.46820 * 203.10091 * 9 8 4 29 29 H 1.08998 * 109.47322 * 323.10038 * 9 8 4 30 30 H 1.08004 * 120.04043 * 180.28032 * 10 8 4 31 31 H 1.09006 * 109.47311 * 296.04526 * 13 12 11 32 32 H 1.08995 * 109.47651 * 56.05021 * 13 12 11 33 33 H 1.09002 * 109.47087 * 176.05003 * 13 12 11 34 34 H 1.09000 * 109.47114 * 70.00637 * 14 12 11 35 35 H 1.08996 * 109.47325 * 309.99931 * 14 12 11 36 36 H 0.97003 * 120.00089 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5810 1.1966 -0.0005 5 7 4.3185 2.4798 -0.0011 6 8 3.7133 3.5301 -0.1192 7 8 5.5309 2.4855 0.1164 8 6 4.2764 0.0011 -0.0005 9 6 5.7834 0.0070 -0.0017 10 6 3.5915 -1.1979 0.0057 11 6 2.2022 -1.2024 -0.0005 12 7 1.5062 -2.4134 -0.0005 13 6 1.7663 -3.1701 1.2313 14 6 1.8380 -3.2112 -1.1886 15 6 0.8980 -4.3852 -1.2838 16 1 0.1311 -4.5249 -0.5363 17 6 1.0137 -5.2781 -2.3280 18 7 1.9442 -5.1049 -3.2412 19 14 -0.1510 -6.7338 -2.4457 20 1 -1.0990 -6.7028 -1.3031 21 1 -0.9089 -6.6594 -3.7206 22 1 0.6293 -7.9965 -2.4067 23 1 -0.3634 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3634 -0.8897 -0.5142 26 1 1.6584 2.1311 0.0004 27 1 6.1470 0.1323 1.0182 28 1 6.1501 -0.9371 -0.4048 29 1 6.1431 0.8299 -0.6194 30 1 4.1351 -2.1311 0.0103 31 1 2.8213 -3.4408 1.2756 32 1 1.5121 -2.5563 2.0954 33 1 1.1586 -4.0749 1.2370 34 1 2.8634 -3.5723 -1.1090 35 1 1.7387 -2.5930 -2.0808 36 1 2.0259 -5.7333 -3.9756 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710638188.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:10 Heat of formation + Delta-G solvation = 9.648269 kcal Electronic energy + Delta-G solvation = -19925.793099 eV Core-core repulsion = 16798.704846 eV Total energy + Delta-G solvation = -3127.088253 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.33836 -41.28532 -38.06913 -37.74568 -35.09100 -34.61307 -32.09248 -30.32215 -29.32890 -27.93359 -26.87268 -25.50032 -24.32204 -22.82984 -21.95104 -19.85907 -19.28008 -18.70567 -18.57174 -17.43292 -17.06613 -16.69120 -15.82428 -15.61728 -14.87544 -14.80284 -14.50958 -14.17415 -14.10049 -13.97545 -13.80438 -13.26861 -12.93923 -12.91216 -12.75561 -12.67744 -12.52715 -12.49121 -12.38615 -12.23548 -12.07729 -11.70934 -11.41357 -10.67289 -10.33387 -9.82949 -9.40332 -8.25298 -6.35560 -1.20084 -0.07442 0.27382 0.37438 1.41343 1.43330 1.55479 2.15276 2.37774 2.93565 3.09986 3.32566 3.36965 3.75294 3.83468 4.11063 4.23128 4.39396 4.50003 4.54173 4.56361 4.61021 4.80553 4.82976 4.87481 4.96675 4.98773 5.03938 5.08097 5.15232 5.34652 5.42630 5.54024 5.64378 5.97401 6.00188 6.53219 6.58126 6.78964 7.34792 8.86084 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.030747 B = 0.004782 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.449483 B = 5854.170378 C = 6213.976237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.077 4.077 3 C -0.043 4.043 4 C -0.072 4.072 5 N 0.040 4.960 6 O -0.190 6.190 7 O -0.167 6.167 8 C -0.013 4.013 9 C -0.128 4.128 10 C -0.160 4.160 11 C 0.151 3.849 12 N -0.512 5.512 13 C 0.042 3.958 14 C 0.215 3.785 15 C -0.522 4.522 16 H 0.071 0.929 17 C 0.006 3.994 18 N -0.934 5.934 19 Si 0.968 3.032 20 H -0.259 1.259 21 H -0.282 1.282 22 H -0.281 1.281 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.068 0.932 26 H 0.173 0.827 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.139 0.861 31 H 0.024 0.976 32 H 0.078 0.922 33 H 0.075 0.925 34 H -0.022 1.022 35 H 0.000 1.000 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.292 9.048 8.593 12.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.079 4.079 3 C -0.062 4.062 4 C -0.156 4.156 5 N 0.552 4.448 6 O -0.399 6.399 7 O -0.381 6.381 8 C -0.015 4.015 9 C -0.184 4.184 10 C -0.181 4.181 11 C 0.056 3.944 12 N -0.233 5.233 13 C -0.104 4.104 14 C 0.091 3.909 15 C -0.560 4.560 16 H 0.089 0.911 17 C -0.193 4.193 18 N -0.574 5.574 19 Si 0.793 3.207 20 H -0.183 1.183 21 H -0.208 1.208 22 H -0.206 1.206 23 H 0.107 0.893 24 H 0.103 0.897 25 H 0.087 0.913 26 H 0.190 0.810 27 H 0.117 0.883 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.157 0.843 31 H 0.042 0.958 32 H 0.097 0.903 33 H 0.094 0.906 34 H -0.004 1.004 35 H 0.018 0.982 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.482 8.474 8.428 11.961 hybrid contribution 0.818 -0.789 -0.556 1.265 sum 1.300 7.686 7.872 11.078 Atomic orbital electron populations 1.20687 0.87474 1.03735 1.03739 1.20035 0.98674 0.89454 0.99714 1.20987 0.90305 1.00427 0.94515 1.20995 0.92841 0.82420 1.19325 1.43649 1.01020 1.02997 0.97088 1.94498 1.70007 1.20815 1.54591 1.94434 0.96656 1.93908 1.53130 1.19854 0.98797 0.89733 0.93127 1.21314 0.87414 1.04698 1.04957 1.21777 0.94994 0.97715 1.03579 1.19638 0.90527 0.93008 0.91223 1.59894 1.55534 1.03114 1.04793 1.22312 0.99506 0.98626 0.89913 1.19468 0.94095 0.91302 0.86048 1.21432 1.16176 1.08369 1.10063 0.91061 1.25864 0.97242 1.01118 0.95066 1.70083 1.34909 1.38454 1.13958 0.85341 0.78662 0.78355 0.78322 1.18307 1.20796 1.20637 0.89311 0.89660 0.91313 0.80982 0.88259 0.90048 0.88908 0.84337 0.95769 0.90294 0.90618 1.00411 0.98159 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.47 9.77 71.24 0.70 -1.78 16 2 C -0.08 -2.22 5.90 -19.74 -0.12 -2.34 16 3 C -0.04 -1.14 9.21 22.25 0.20 -0.94 16 4 C -0.07 -2.09 6.83 36.40 0.25 -1.85 16 5 N 0.04 1.20 4.45 -46.42 -0.21 0.99 16 6 O -0.19 -5.86 18.46 18.89 0.35 -5.51 16 7 O -0.17 -5.00 15.35 18.88 0.29 -4.71 16 8 C -0.01 -0.37 5.88 -19.89 -0.12 -0.49 16 9 C -0.13 -3.05 8.67 71.24 0.62 -2.43 16 10 C -0.16 -5.09 8.33 22.40 0.19 -4.90 16 11 C 0.15 5.11 4.65 38.21 0.18 5.29 16 12 N -0.51 -19.63 3.67 -724.44 -2.66 -22.29 16 13 C 0.04 1.41 9.08 127.69 1.16 2.57 16 14 C 0.22 10.48 4.31 85.56 0.37 10.85 16 15 C -0.52 -27.19 8.52 25.60 0.22 -26.97 16 16 H 0.07 3.59 7.10 -2.91 -0.02 3.56 16 17 C 0.01 0.30 5.46 84.65 0.46 0.76 16 18 N -0.93 -53.58 13.29 21.45 0.28 -53.29 16 19 Si 0.97 41.74 29.54 68.60 2.03 43.76 16 20 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 22 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 23 H 0.09 1.86 8.14 -2.38 -0.02 1.85 16 24 H 0.08 1.69 8.09 -2.39 -0.02 1.67 16 25 H 0.07 2.10 7.46 -2.39 -0.02 2.08 16 26 H 0.17 3.74 7.62 -2.91 -0.02 3.71 16 27 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.08 1.78 8.04 -2.38 -0.02 1.76 16 29 H 0.09 2.29 5.86 -2.39 -0.01 2.28 16 30 H 0.14 4.46 7.16 -2.91 -0.02 4.44 16 31 H 0.02 0.78 7.46 -2.38 -0.02 0.76 16 32 H 0.08 2.16 8.12 -2.39 -0.02 2.14 16 33 H 0.08 2.66 6.86 -2.39 -0.02 2.65 16 34 H -0.02 -1.14 7.49 -2.39 -0.02 -1.16 16 35 H 0.00 0.02 8.06 -2.39 -0.02 0.00 16 36 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -59.59 306.57 5.28 -54.31 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 1.09 Total: 8.97 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: 4.11 Total: -22.23 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: -2.58 Total: -74.60 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.64 Total: -10.22 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Total: -59.59 5.28 -54.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710638188.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.960 kcal (2) G-P(sol) polarization free energy of solvation -59.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds