Wall clock time and date at job start Mon Mar 30 2020 06:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86309 * 1 3 3 C 1.86299 * 109.46830 * 2 1 4 4 C 1.86300 * 109.47065 * 240.00026 * 2 1 3 5 5 O 1.63099 * 109.46983 * 120.00149 * 2 1 3 6 6 C 1.42900 * 114.00048 * 59.99981 * 5 2 1 7 7 C 1.50703 * 109.47198 * 269.99842 * 6 5 2 8 8 N 1.27937 * 119.99787 * 154.64313 * 7 6 5 9 9 Si 1.86800 * 120.00031 * 334.64050 * 7 6 5 10 10 H 1.48503 * 109.46919 * 5.06867 * 9 7 6 11 11 H 1.48500 * 109.47249 * 125.06569 * 9 7 6 12 12 H 1.48498 * 109.47196 * 245.07040 * 9 7 6 13 13 C 1.52997 * 109.47160 * 149.99769 * 6 5 2 14 14 H 1.08999 * 110.43924 * 180.54971 * 13 6 5 15 15 C 1.54892 * 110.60106 * 303.17434 * 13 6 5 16 16 C 1.54889 * 102.75208 * 156.67650 * 15 13 6 17 17 C 1.54274 * 104.19185 * 322.05238 * 16 15 13 18 18 F 1.39895 * 110.03248 * 264.32675 * 17 16 15 19 19 F 1.39895 * 110.02757 * 142.89741 * 17 16 15 20 20 C 1.53872 * 106.59729 * 23.61329 * 17 16 15 21 21 H 1.08997 * 109.46847 * 299.99880 * 1 2 3 22 22 H 1.09003 * 109.47164 * 60.00252 * 1 2 3 23 23 H 1.08997 * 109.46964 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46816 * 179.97438 * 3 2 1 25 25 H 1.09003 * 109.47041 * 299.99823 * 3 2 1 26 26 H 1.08997 * 109.47307 * 60.00402 * 3 2 1 27 27 H 1.08997 * 109.47296 * 300.00519 * 4 2 1 28 28 H 1.09003 * 109.47357 * 59.99840 * 4 2 1 29 29 H 1.08999 * 109.47441 * 179.97438 * 4 2 1 30 30 H 1.08997 * 109.47243 * 30.00312 * 6 5 2 31 31 H 0.97005 * 120.00235 * 359.97438 * 8 7 6 32 32 H 1.08998 * 110.75284 * 274.98865 * 15 13 6 33 33 H 1.09000 * 110.75516 * 38.35604 * 15 13 6 34 34 H 1.09001 * 110.48424 * 203.38055 * 16 15 13 35 35 H 1.08995 * 110.49066 * 80.73069 * 16 15 13 36 36 H 1.09007 * 110.03320 * 240.71368 * 20 17 16 37 37 H 1.08998 * 110.03096 * 119.28294 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 8 2.4067 -0.7689 1.3317 6 6 1.9850 -2.1308 1.4294 7 6 0.6767 -2.1994 2.1742 8 7 -0.1201 -3.1809 1.9783 9 14 0.2185 -0.8513 3.3834 10 1 1.2425 0.2233 3.3380 11 1 -1.1063 -0.2883 3.0184 12 1 0.1551 -1.4171 4.7548 13 6 3.0434 -2.9396 2.1821 14 1 2.7417 -3.9843 2.2572 15 6 4.4197 -2.8218 1.4813 16 6 5.4142 -3.1396 2.6254 17 6 4.7885 -2.4712 3.8671 18 9 5.3481 -1.2040 4.0622 19 9 4.9991 -3.2680 4.9975 20 6 3.2812 -2.3440 3.5851 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 3.5740 1.7565 0.0005 25 1 2.1206 2.2703 -0.8900 26 1 2.1207 2.2703 0.8900 27 1 2.1207 -1.9058 -1.5212 28 1 2.1207 -0.3644 -2.4112 29 1 3.5741 -0.8779 -1.5214 30 1 1.8558 -2.5438 0.4290 31 1 0.1177 -3.8808 1.3501 32 1 4.5081 -3.5535 0.6783 33 1 4.5755 -1.8113 1.1035 34 1 6.3920 -2.7079 2.4118 35 1 5.4954 -4.2166 2.7722 36 1 2.9856 -1.2949 3.6004 37 1 2.7138 -2.9031 4.3291 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713051364.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:13 Heat of formation + Delta-G solvation = -175.437168 kcal Electronic energy + Delta-G solvation = -19916.756994 eV Core-core repulsion = 16680.504356 eV Total energy + Delta-G solvation = -3236.252638 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.118 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.75727 -47.82693 -40.44619 -37.14173 -36.00756 -30.91338 -29.72665 -29.56164 -28.65058 -28.55570 -26.23852 -22.74327 -22.08744 -20.98527 -18.88443 -18.22911 -17.93685 -17.39848 -16.71067 -16.23194 -15.88285 -15.24963 -15.15951 -14.54905 -14.36966 -14.25632 -14.15953 -14.05481 -14.00084 -13.67783 -13.39994 -13.27103 -13.23935 -13.14777 -13.02905 -12.81204 -12.61446 -12.57140 -12.45718 -12.00195 -11.84230 -11.70929 -11.65976 -11.21852 -10.87857 -10.77197 -10.05731 0.67093 1.11445 1.23941 1.64069 1.70841 1.75271 1.86381 1.94581 2.29087 2.80346 2.86204 3.12523 3.33858 3.50996 3.72370 3.89284 4.04265 4.11436 4.19151 4.29095 4.35290 4.41398 4.52948 4.59113 4.60773 4.61685 4.62195 4.67996 4.68388 4.72057 4.88978 4.94936 5.04100 5.22265 5.33741 5.42596 5.50441 6.69207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.515 4.515 2 Si 1.243 2.757 3 C -0.465 4.465 4 C -0.506 4.506 5 O -0.607 6.607 6 C 0.100 3.900 7 C -0.049 4.049 8 N -0.616 5.616 9 Si 1.035 2.965 10 H -0.225 1.225 11 H -0.246 1.246 12 H -0.246 1.246 13 C -0.083 4.083 14 H 0.096 0.904 15 C -0.117 4.117 16 C -0.162 4.162 17 C 0.284 3.716 18 F -0.195 7.195 19 F -0.201 7.201 20 C -0.168 4.168 21 H 0.073 0.927 22 H 0.078 0.922 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.325 0.675 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.213 -0.152 -3.291 3.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.617 4.617 2 Si 1.380 2.620 3 C -0.571 4.571 4 C -0.608 4.608 5 O -0.565 6.565 6 C 0.041 3.959 7 C -0.295 4.295 8 N -0.228 5.228 9 Si 0.848 3.152 10 H -0.148 1.148 11 H -0.170 1.170 12 H -0.170 1.170 13 C -0.102 4.102 14 H 0.114 0.886 15 C -0.154 4.154 16 C -0.200 4.200 17 C 0.248 3.752 18 F -0.176 7.176 19 F -0.182 7.182 20 C -0.206 4.206 21 H 0.092 0.908 22 H 0.097 0.903 23 H 0.087 0.913 24 H 0.094 0.906 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.143 0.857 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.131 0.869 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.780 0.193 -2.085 2.234 hybrid contribution 0.802 -0.726 -1.480 1.834 sum 0.023 -0.533 -3.565 3.605 Atomic orbital electron populations 1.27113 1.24752 1.04698 1.05159 0.77385 0.63752 0.65095 0.55726 1.26267 1.07034 1.18822 1.05017 1.26930 1.07050 1.08421 1.18373 1.85476 1.78812 1.26142 1.66040 1.21763 0.93143 0.82245 0.98791 1.32496 0.92307 1.03194 1.01488 1.69469 1.32285 1.03235 1.17831 0.83944 0.80778 0.74717 0.75718 1.14763 1.16963 1.16962 1.22075 0.95207 0.98867 0.94071 0.88615 1.22545 0.91884 1.04050 0.96956 1.23363 1.00861 1.02698 0.93043 1.21739 0.94365 0.75423 0.83707 1.93036 1.87106 1.41599 1.95815 1.93026 1.96119 1.73849 1.55174 1.23285 0.92896 1.06099 0.98324 0.90789 0.90288 0.91347 0.90569 0.90419 0.90529 0.91624 0.90607 0.90713 0.90275 0.85710 0.89915 0.88818 0.88602 0.88394 0.86870 0.88576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.52 0.75 7.44 101.05 0.75 1.50 16 2 Si 1.24 -3.27 11.95 -169.99 -2.03 -5.30 16 3 C -0.46 0.84 8.65 101.05 0.87 1.72 16 4 C -0.51 1.24 8.56 101.05 0.87 2.11 16 5 O -0.61 1.01 4.98 -35.23 -0.18 0.84 16 6 C 0.10 -0.21 1.71 -27.88 -0.05 -0.26 16 7 C -0.05 0.03 3.30 -13.90 -0.05 -0.02 16 8 N -0.62 -0.03 13.48 56.22 0.76 0.73 16 9 Si 1.04 0.33 23.32 -169.99 -3.96 -3.64 16 10 H -0.23 0.16 6.86 56.52 0.39 0.55 16 11 H -0.25 -0.21 7.11 56.52 0.40 0.19 16 12 H -0.25 -0.19 7.11 56.52 0.40 0.21 16 13 C -0.08 0.19 2.78 -88.96 -0.25 -0.06 16 14 H 0.10 -0.32 8.14 -51.93 -0.42 -0.75 16 15 C -0.12 0.32 6.28 -24.74 -0.16 0.17 16 16 C -0.16 0.25 6.40 -25.07 -0.16 0.09 16 17 C 0.28 0.27 2.57 -25.61 -0.07 0.20 16 18 F -0.19 -0.58 17.04 2.25 0.04 -0.54 16 19 F -0.20 -0.57 17.04 2.25 0.04 -0.54 16 20 C -0.17 0.08 4.68 -25.61 -0.12 -0.04 16 21 H 0.07 -0.08 6.42 -51.93 -0.33 -0.42 16 22 H 0.08 -0.15 7.96 -51.93 -0.41 -0.56 16 23 H 0.07 -0.08 7.24 -51.93 -0.38 -0.45 16 24 H 0.08 -0.13 7.96 -51.93 -0.41 -0.54 16 25 H 0.08 -0.18 7.96 -51.93 -0.41 -0.59 16 26 H 0.08 -0.12 7.96 -51.93 -0.41 -0.53 16 27 H 0.06 -0.18 7.10 -51.93 -0.37 -0.55 16 28 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 29 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 30 H 0.08 -0.32 6.15 -51.93 -0.32 -0.63 16 31 H 0.33 -0.58 8.73 -40.82 -0.36 -0.93 16 32 H 0.08 -0.34 8.14 -51.93 -0.42 -0.76 16 33 H 0.09 -0.24 7.30 -51.93 -0.38 -0.62 16 34 H 0.10 -0.17 8.11 -51.93 -0.42 -0.59 16 35 H 0.10 -0.23 8.12 -51.93 -0.42 -0.65 16 36 H 0.11 -0.03 5.28 -51.93 -0.27 -0.31 16 37 H 0.10 -0.10 8.02 -51.93 -0.42 -0.51 16 LS Contribution 297.80 15.07 4.49 4.49 Total: 0.00 -3.19 297.80 -5.00 -8.19 By element: Atomic # 1 Polarization: -3.84 SS G_CDS: -5.80 Total: -9.64 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 1.65 Total: 5.42 kcal Atomic # 7 Polarization: -0.03 SS G_CDS: 0.76 Total: 0.73 kcal Atomic # 8 Polarization: 1.01 SS G_CDS: -0.18 Total: 0.84 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.08 Total: -1.08 kcal Atomic # 14 Polarization: -2.95 SS G_CDS: -6.00 Total: -8.94 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -3.19 -5.00 -8.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713051364.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.245 kcal (2) G-P(sol) polarization free energy of solvation -3.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds