Wall clock time and date at job start Mon Mar 30 2020 06:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86309 * 1 3 3 C 1.86299 * 109.46830 * 2 1 4 4 C 1.86300 * 109.47065 * 240.00026 * 2 1 3 5 5 O 1.63099 * 109.46983 * 120.00149 * 2 1 3 6 6 C 1.42900 * 114.00048 * 59.99981 * 5 2 1 7 7 C 1.50703 * 109.47198 * 269.99842 * 6 5 2 8 8 N 1.27937 * 119.99787 * 154.64313 * 7 6 5 9 9 Si 1.86800 * 120.00031 * 334.64050 * 7 6 5 10 10 H 1.48503 * 109.46919 * 5.06867 * 9 7 6 11 11 H 1.48500 * 109.47249 * 125.06569 * 9 7 6 12 12 H 1.48498 * 109.47196 * 245.07040 * 9 7 6 13 13 C 1.52997 * 109.47160 * 149.99769 * 6 5 2 14 14 H 1.08999 * 110.43924 * 180.54971 * 13 6 5 15 15 C 1.54892 * 110.60106 * 303.17434 * 13 6 5 16 16 C 1.54889 * 102.75208 * 156.67650 * 15 13 6 17 17 C 1.54274 * 104.19185 * 322.05238 * 16 15 13 18 18 F 1.39895 * 110.03248 * 264.32675 * 17 16 15 19 19 F 1.39895 * 110.02757 * 142.89741 * 17 16 15 20 20 C 1.53872 * 106.59729 * 23.61329 * 17 16 15 21 21 H 1.08997 * 109.46847 * 299.99880 * 1 2 3 22 22 H 1.09003 * 109.47164 * 60.00252 * 1 2 3 23 23 H 1.08997 * 109.46964 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46816 * 179.97438 * 3 2 1 25 25 H 1.09003 * 109.47041 * 299.99823 * 3 2 1 26 26 H 1.08997 * 109.47307 * 60.00402 * 3 2 1 27 27 H 1.08997 * 109.47296 * 300.00519 * 4 2 1 28 28 H 1.09003 * 109.47357 * 59.99840 * 4 2 1 29 29 H 1.08999 * 109.47441 * 179.97438 * 4 2 1 30 30 H 1.08997 * 109.47243 * 30.00312 * 6 5 2 31 31 H 0.97005 * 120.00235 * 359.97438 * 8 7 6 32 32 H 1.08998 * 110.75284 * 274.98865 * 15 13 6 33 33 H 1.09000 * 110.75516 * 38.35604 * 15 13 6 34 34 H 1.09001 * 110.48424 * 203.38055 * 16 15 13 35 35 H 1.08995 * 110.49066 * 80.73069 * 16 15 13 36 36 H 1.09007 * 110.03320 * 240.71368 * 20 17 16 37 37 H 1.08998 * 110.03096 * 119.28294 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 8 2.4067 -0.7689 1.3317 6 6 1.9850 -2.1308 1.4294 7 6 0.6767 -2.1994 2.1742 8 7 -0.1201 -3.1809 1.9783 9 14 0.2185 -0.8513 3.3834 10 1 1.2425 0.2233 3.3380 11 1 -1.1063 -0.2883 3.0184 12 1 0.1551 -1.4171 4.7548 13 6 3.0434 -2.9396 2.1821 14 1 2.7417 -3.9843 2.2572 15 6 4.4197 -2.8218 1.4813 16 6 5.4142 -3.1396 2.6254 17 6 4.7885 -2.4712 3.8671 18 9 5.3481 -1.2040 4.0622 19 9 4.9991 -3.2680 4.9975 20 6 3.2812 -2.3440 3.5851 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 3.5740 1.7565 0.0005 25 1 2.1206 2.2703 -0.8900 26 1 2.1207 2.2703 0.8900 27 1 2.1207 -1.9058 -1.5212 28 1 2.1207 -0.3644 -2.4112 29 1 3.5741 -0.8779 -1.5214 30 1 1.8558 -2.5438 0.4290 31 1 0.1177 -3.8808 1.3501 32 1 4.5081 -3.5535 0.6783 33 1 4.5755 -1.8113 1.1035 34 1 6.3920 -2.7079 2.4118 35 1 5.4954 -4.2166 2.7722 36 1 2.9856 -1.2949 3.6004 37 1 2.7138 -2.9031 4.3291 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713051364.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:13 Heat of formation + Delta-G solvation = -165.571973 kcal Electronic energy + Delta-G solvation = -19916.329207 eV Core-core repulsion = 16680.504356 eV Total energy + Delta-G solvation = -3235.824851 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.118 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.87787 -47.97246 -40.29323 -37.00995 -35.92017 -30.76915 -29.55054 -29.44302 -28.48898 -28.35855 -26.11121 -22.69429 -21.96805 -20.87527 -18.82554 -18.20329 -17.90913 -17.30150 -16.69714 -16.14993 -15.88454 -15.22038 -15.14549 -14.40669 -14.32989 -14.22036 -14.18676 -13.97143 -13.83167 -13.55167 -13.21567 -13.19193 -13.06916 -13.04841 -12.93430 -12.70631 -12.48606 -12.43947 -12.31118 -11.88837 -11.77634 -11.66169 -11.56249 -11.12488 -10.71460 -10.59566 -9.94642 0.71560 1.13304 1.42740 1.61351 1.73205 1.87876 1.91699 2.08724 2.47394 2.82804 2.96988 3.21809 3.43199 3.62349 3.91412 4.03071 4.16648 4.29890 4.35686 4.49032 4.52602 4.55389 4.71910 4.74022 4.75757 4.79748 4.81849 4.82820 4.85910 4.92584 5.03780 5.08994 5.24406 5.43456 5.52551 5.62359 5.67274 6.82676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.529 4.529 2 Si 1.279 2.721 3 C -0.480 4.480 4 C -0.508 4.508 5 O -0.616 6.616 6 C 0.098 3.902 7 C -0.041 4.041 8 N -0.632 5.632 9 Si 1.021 2.979 10 H -0.213 1.213 11 H -0.258 1.258 12 H -0.258 1.258 13 C -0.079 4.079 14 H 0.111 0.889 15 C -0.113 4.113 16 C -0.158 4.158 17 C 0.269 3.731 18 F -0.211 7.211 19 F -0.216 7.216 20 C -0.173 4.173 21 H 0.065 0.935 22 H 0.081 0.919 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.337 0.663 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.610 -0.981 -4.583 4.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.630 4.630 2 Si 1.415 2.585 3 C -0.585 4.585 4 C -0.611 4.611 5 O -0.574 6.574 6 C 0.039 3.961 7 C -0.288 4.288 8 N -0.246 5.246 9 Si 0.837 3.163 10 H -0.135 1.135 11 H -0.183 1.183 12 H -0.182 1.182 13 C -0.099 4.099 14 H 0.130 0.870 15 C -0.150 4.150 16 C -0.196 4.196 17 C 0.233 3.767 18 F -0.192 7.192 19 F -0.197 7.197 20 C -0.211 4.211 21 H 0.084 0.916 22 H 0.100 0.900 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.100 0.900 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.123 0.877 31 H 0.156 0.844 32 H 0.123 0.877 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.388 -0.611 -3.370 3.447 hybrid contribution 0.638 -0.424 -1.019 1.275 sum 0.251 -1.035 -4.389 4.517 Atomic orbital electron populations 1.27302 1.26226 1.04508 1.04949 0.76742 0.62227 0.64043 0.55495 1.26442 1.07077 1.20041 1.04961 1.26931 1.07280 1.08828 1.18013 1.85477 1.78767 1.26545 1.66577 1.21861 0.92187 0.82224 0.99864 1.32174 0.93008 1.02501 1.01111 1.69434 1.32872 1.03784 1.18534 0.84104 0.80633 0.75883 0.75721 1.13477 1.18287 1.18220 1.22128 0.95537 0.99485 0.92732 0.87050 1.22584 0.90807 1.04734 0.96903 1.23396 1.01109 1.03006 0.92092 1.22274 0.95561 0.74828 0.84056 1.92996 1.87456 1.42811 1.95953 1.92989 1.96275 1.74192 1.56256 1.23335 0.91874 1.06045 0.99805 0.91565 0.89989 0.91512 0.90665 0.90010 0.91143 0.90868 0.90681 0.90404 0.87677 0.84449 0.87654 0.88940 0.88506 0.87377 0.87420 0.88561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.53 1.51 7.44 113.37 0.84 2.35 16 2 Si 1.28 -7.45 11.95 68.60 0.82 -6.63 16 3 C -0.48 1.65 8.65 113.37 0.98 2.63 16 4 C -0.51 3.30 8.56 113.37 0.97 4.27 16 5 O -0.62 2.45 4.98 -148.98 -0.74 1.71 16 6 C 0.10 -0.53 1.71 29.85 0.05 -0.48 16 7 C -0.04 0.06 3.30 88.68 0.29 0.35 16 8 N -0.63 0.25 13.48 24.11 0.33 0.57 16 9 Si 1.02 1.71 23.32 68.60 1.60 3.31 16 10 H -0.21 0.11 6.86 99.48 0.68 0.79 16 11 H -0.26 -0.91 7.11 99.48 0.71 -0.20 16 12 H -0.26 -0.87 7.11 99.48 0.71 -0.16 16 13 C -0.08 0.46 2.78 -9.72 -0.03 0.43 16 14 H 0.11 -0.98 8.14 -2.39 -0.02 -0.99 16 15 C -0.11 0.82 6.28 31.89 0.20 1.02 16 16 C -0.16 0.60 6.40 31.67 0.20 0.81 16 17 C 0.27 0.62 2.57 31.32 0.08 0.70 16 18 F -0.21 -1.48 17.04 44.97 0.77 -0.71 16 19 F -0.22 -1.42 17.04 44.97 0.77 -0.66 16 20 C -0.17 0.15 4.68 31.32 0.15 0.29 16 21 H 0.07 -0.09 6.42 -2.39 -0.02 -0.11 16 22 H 0.08 -0.31 7.96 -2.39 -0.02 -0.33 16 23 H 0.07 -0.17 7.24 -2.39 -0.02 -0.18 16 24 H 0.07 -0.25 7.96 -2.39 -0.02 -0.26 16 25 H 0.08 -0.37 7.96 -2.39 -0.02 -0.39 16 26 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 27 H 0.07 -0.57 7.10 -2.39 -0.02 -0.58 16 28 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 29 H 0.08 -0.52 7.96 -2.39 -0.02 -0.54 16 30 H 0.11 -1.08 6.15 -2.39 -0.01 -1.10 16 31 H 0.34 -1.58 8.73 -92.70 -0.81 -2.39 16 32 H 0.11 -1.19 8.14 -2.39 -0.02 -1.21 16 33 H 0.09 -0.61 7.30 -2.39 -0.02 -0.63 16 34 H 0.10 -0.39 8.11 -2.39 -0.02 -0.41 16 35 H 0.11 -0.64 8.12 -2.39 -0.02 -0.66 16 36 H 0.11 0.01 5.28 -2.38 -0.01 -0.01 16 37 H 0.10 -0.13 8.02 -2.39 -0.02 -0.15 16 Total: 0.00 -8.42 297.80 8.26 -0.16 By element: Atomic # 1 Polarization: -11.12 SS G_CDS: 0.98 Total: -10.14 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: 3.74 Total: 12.38 kcal Atomic # 7 Polarization: 0.25 SS G_CDS: 0.33 Total: 0.57 kcal Atomic # 8 Polarization: 2.45 SS G_CDS: -0.74 Total: 1.71 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 1.53 Total: -1.36 kcal Atomic # 14 Polarization: -5.75 SS G_CDS: 2.42 Total: -3.33 kcal Total: -8.42 8.26 -0.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713051364.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.407 kcal (2) G-P(sol) polarization free energy of solvation -8.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -0.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds