Wall clock time and date at job start Mon Mar 30 2020 06:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47033 * 2 1 4 4 C 1.52996 * 109.47615 * 120.00705 * 2 1 3 5 5 C 1.50691 * 109.47523 * 184.99690 * 4 2 1 6 6 H 1.08004 * 120.00090 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00337 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00516 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99633 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47340 * 90.00209 * 9 7 5 11 11 H 1.48506 * 109.47153 * 210.00157 * 9 7 5 12 12 H 1.48504 * 109.47185 * 329.99829 * 9 7 5 13 13 S 1.81006 * 109.46757 * 240.00555 * 2 1 3 14 14 C 1.76204 * 100.00162 * 65.00185 * 13 2 1 15 15 N 1.30430 * 119.99811 * 359.97438 * 14 13 2 16 16 N 1.37723 * 119.99998 * 180.02562 * 14 13 2 17 17 C 1.39871 * 120.00224 * 5.71825 * 16 14 13 18 18 C 1.38881 * 120.07000 * 42.43936 * 17 16 14 19 19 C 1.38107 * 119.92858 * 179.79565 * 18 17 16 20 20 C 1.38291 * 120.06965 * 0.45494 * 19 18 17 21 21 C 1.38285 * 120.14352 * 359.79977 * 20 19 18 22 22 C 1.38106 * 120.07223 * 359.97056 * 21 20 19 23 23 H 1.08994 * 109.47401 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47044 * 299.99515 * 1 2 3 25 25 H 1.09003 * 109.47414 * 59.99443 * 1 2 3 26 26 H 1.09004 * 109.46696 * 304.99948 * 4 2 1 27 27 H 1.09000 * 109.46648 * 64.99253 * 4 2 1 28 28 H 0.97001 * 120.00110 * 179.97438 * 8 7 5 29 29 H 0.96994 * 119.99924 * 174.59305 * 15 14 13 30 30 H 0.97000 * 119.99974 * 185.72511 * 16 14 13 31 31 H 1.08004 * 120.03921 * 0.02562 * 18 17 16 32 32 H 1.08001 * 119.96643 * 180.23563 * 19 18 17 33 33 H 1.07992 * 119.92843 * 179.76691 * 20 19 18 34 34 H 1.07994 * 119.96257 * 179.97438 * 21 20 19 35 35 H 1.07997 * 120.03983 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5419 -0.6151 1.3125 6 1 4.0790 -0.0856 0.5394 7 6 4.2304 -1.1929 2.3580 8 7 5.5411 -1.0998 2.4136 9 14 3.3015 -2.1082 3.6955 10 1 3.1709 -3.5383 3.3175 11 1 4.0448 -2.0007 4.9766 12 1 1.9504 -1.5131 3.8557 13 16 2.1332 -0.8531 -1.4780 14 6 1.5438 0.2425 -2.7258 15 7 0.8764 1.3123 -2.3921 16 7 1.7870 -0.0312 -4.0535 17 6 2.3958 -1.2363 -4.4190 18 6 2.0115 -2.4232 -3.8088 19 6 2.6115 -3.6120 -4.1750 20 6 3.6007 -3.6200 -5.1415 21 6 3.9893 -2.4392 -5.7472 22 6 3.3899 -1.2477 -5.3889 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.6055 -0.2619 2.1369 27 1 1.7516 -1.7716 1.2053 28 1 6.0254 -1.5060 3.1494 29 1 0.6199 1.9554 -3.0713 30 1 1.5362 0.6118 -4.7351 31 1 1.2416 -2.4172 -3.0514 32 1 2.3105 -4.5359 -3.7036 33 1 4.0710 -4.5503 -5.4234 34 1 4.7623 -2.4487 -6.5012 35 1 3.6941 -0.3257 -5.8619 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718933713.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:58 Heat of formation + Delta-G solvation = 44.724210 kcal Electronic energy + Delta-G solvation = -17220.146115 eV Core-core repulsion = 14537.331740 eV Total energy + Delta-G solvation = -2682.814375 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.57375 -36.81877 -34.68361 -32.81137 -31.89170 -30.89000 -28.63770 -27.85919 -23.50345 -23.02883 -22.27222 -21.85420 -20.19618 -17.86398 -17.28898 -16.69740 -16.05614 -15.49408 -14.97855 -14.62911 -14.22347 -13.87565 -13.46434 -13.19154 -12.90837 -12.42865 -12.40717 -12.12585 -11.67886 -11.57594 -11.38901 -11.15773 -10.85259 -10.46375 -10.00222 -9.75698 -9.50399 -9.45644 -9.32904 -9.15624 -8.78303 -8.52096 -7.82117 -7.18664 -6.01947 -4.00375 1.33329 1.42827 1.87226 2.59669 3.00407 3.31721 3.39388 3.42005 3.51178 3.88314 4.45990 4.94303 5.00700 5.20868 5.31938 5.46082 5.55983 5.60451 5.77233 5.86952 5.92353 6.04895 6.15824 6.34496 6.44860 6.56189 6.59504 6.60818 6.79385 6.88838 7.07874 7.10420 7.24636 7.38939 7.73927 8.34754 8.53577 9.05039 9.59009 11.10909 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.019553 B = 0.006125 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.636868 B = 4569.986758 C = 5375.777647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.054 4.054 3 H 0.094 0.906 4 C -0.001 4.001 5 C -0.520 4.520 6 H 0.080 0.920 7 C 0.071 3.929 8 N -0.898 5.898 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.265 1.265 13 S 0.005 5.995 14 C 0.385 3.615 15 N -0.753 5.753 16 N -0.695 5.695 17 C 0.155 3.845 18 C -0.134 4.134 19 C -0.091 4.091 20 C -0.139 4.139 21 C -0.101 4.101 22 C -0.146 4.146 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.035 0.965 27 H 0.019 0.981 28 H 0.263 0.737 29 H 0.323 0.677 30 H 0.401 0.599 31 H 0.138 0.862 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.644 -2.711 -15.471 17.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.183 4.183 3 H 0.112 0.888 4 C -0.040 4.040 5 C -0.559 4.559 6 H 0.098 0.902 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.190 1.190 13 S 0.234 5.766 14 C -0.002 4.002 15 N -0.390 5.390 16 N -0.332 5.332 17 C 0.059 3.941 18 C -0.156 4.156 19 C -0.110 4.110 20 C -0.158 4.158 21 C -0.119 4.119 22 C -0.167 4.167 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.053 0.947 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.141 0.859 30 H 0.238 0.762 31 H 0.156 0.844 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.192 -3.452 -14.445 16.501 hybrid contribution -0.908 1.147 -0.439 1.527 sum -8.100 -2.305 -14.884 17.101 Atomic orbital electron populations 1.22136 0.94427 1.01370 1.02805 1.23356 0.97270 1.02886 0.94754 0.88811 1.19567 0.97915 0.95269 0.91226 1.21160 0.89284 1.35493 1.09938 0.90153 1.24979 0.94683 0.95780 0.97661 1.69909 1.06498 1.45143 1.32161 0.86874 0.80557 0.80696 0.81797 1.20203 1.21340 1.18971 1.86535 1.67530 1.27438 0.95124 1.25478 0.91002 0.97045 0.86658 1.70528 1.23042 1.06813 1.38665 1.43362 1.64888 1.19248 1.05695 1.17776 0.93645 0.85768 0.96956 1.21281 1.01902 0.91174 1.01231 1.21012 0.95880 0.97655 0.96485 1.21114 0.98599 0.98159 0.97891 1.20923 0.99228 0.92145 0.99638 1.20949 0.96243 0.98708 1.00820 0.93278 0.92701 0.90598 0.94695 0.96284 0.92740 0.85941 0.76206 0.84408 0.85570 0.86105 0.85997 0.86174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 8.97 37.16 0.33 -2.27 16 2 C -0.05 -1.11 2.15 -26.73 -0.06 -1.17 16 3 H 0.09 2.08 7.98 -51.92 -0.41 1.67 16 4 C 0.00 -0.02 3.51 -27.89 -0.10 -0.12 16 5 C -0.52 -14.63 9.09 -34.45 -0.31 -14.95 16 6 H 0.08 2.46 7.84 -52.48 -0.41 2.05 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 8 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 9 Si 0.87 21.49 27.47 -169.99 -4.67 16.82 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 13 S 0.01 0.10 16.92 -107.50 -1.82 -1.72 16 14 C 0.38 6.34 7.76 -87.93 -0.68 5.66 16 15 N -0.75 -12.36 10.65 30.77 0.33 -12.03 16 16 N -0.69 -9.38 5.44 -10.44 -0.06 -9.43 16 17 C 0.16 2.12 5.94 -83.71 -0.50 1.63 16 18 C -0.13 -1.86 7.88 -39.39 -0.31 -2.17 16 19 C -0.09 -1.12 10.04 -39.61 -0.40 -1.52 16 20 C -0.14 -1.55 10.04 -39.54 -0.40 -1.94 16 21 C -0.10 -1.11 10.04 -39.61 -0.40 -1.51 16 22 C -0.15 -1.76 9.97 -39.39 -0.39 -2.16 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.08 1.30 5.68 -51.93 -0.30 1.01 16 26 H 0.04 0.83 7.20 -51.93 -0.37 0.46 16 27 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 28 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 29 H 0.32 4.54 8.81 -40.82 -0.36 4.18 16 30 H 0.40 4.32 8.84 -40.82 -0.36 3.96 16 31 H 0.14 1.99 6.37 -52.36 -0.33 1.66 16 32 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 303.17 15.07 4.57 4.57 Total: -1.00 -31.07 303.17 -8.83 -39.90 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -4.65 Total: 7.31 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -3.31 Total: -18.58 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 1.04 Total: -48.29 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -1.82 Total: -1.72 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.07 -8.83 -39.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718933713.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.622 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds