Wall clock time and date at job start Mon Mar 30 2020 06:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47033 * 2 1 4 4 C 1.52996 * 109.47615 * 120.00705 * 2 1 3 5 5 C 1.50691 * 109.47523 * 184.99690 * 4 2 1 6 6 H 1.08004 * 120.00090 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00337 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00516 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99633 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47340 * 90.00209 * 9 7 5 11 11 H 1.48506 * 109.47153 * 210.00157 * 9 7 5 12 12 H 1.48504 * 109.47185 * 329.99829 * 9 7 5 13 13 S 1.81006 * 109.46757 * 240.00555 * 2 1 3 14 14 C 1.76204 * 100.00162 * 65.00185 * 13 2 1 15 15 N 1.30430 * 119.99811 * 359.97438 * 14 13 2 16 16 N 1.37723 * 119.99998 * 180.02562 * 14 13 2 17 17 C 1.39871 * 120.00224 * 5.71825 * 16 14 13 18 18 C 1.38881 * 120.07000 * 42.43936 * 17 16 14 19 19 C 1.38107 * 119.92858 * 179.79565 * 18 17 16 20 20 C 1.38291 * 120.06965 * 0.45494 * 19 18 17 21 21 C 1.38285 * 120.14352 * 359.79977 * 20 19 18 22 22 C 1.38106 * 120.07223 * 359.97056 * 21 20 19 23 23 H 1.08994 * 109.47401 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47044 * 299.99515 * 1 2 3 25 25 H 1.09003 * 109.47414 * 59.99443 * 1 2 3 26 26 H 1.09004 * 109.46696 * 304.99948 * 4 2 1 27 27 H 1.09000 * 109.46648 * 64.99253 * 4 2 1 28 28 H 0.97001 * 120.00110 * 179.97438 * 8 7 5 29 29 H 0.96994 * 119.99924 * 174.59305 * 15 14 13 30 30 H 0.97000 * 119.99974 * 185.72511 * 16 14 13 31 31 H 1.08004 * 120.03921 * 0.02562 * 18 17 16 32 32 H 1.08001 * 119.96643 * 180.23563 * 19 18 17 33 33 H 1.07992 * 119.92843 * 179.76691 * 20 19 18 34 34 H 1.07994 * 119.96257 * 179.97438 * 21 20 19 35 35 H 1.07997 * 120.03983 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5419 -0.6151 1.3125 6 1 4.0790 -0.0856 0.5394 7 6 4.2304 -1.1929 2.3580 8 7 5.5411 -1.0998 2.4136 9 14 3.3015 -2.1082 3.6955 10 1 3.1709 -3.5383 3.3175 11 1 4.0448 -2.0007 4.9766 12 1 1.9504 -1.5131 3.8557 13 16 2.1332 -0.8531 -1.4780 14 6 1.5438 0.2425 -2.7258 15 7 0.8764 1.3123 -2.3921 16 7 1.7870 -0.0312 -4.0535 17 6 2.3958 -1.2363 -4.4190 18 6 2.0115 -2.4232 -3.8088 19 6 2.6115 -3.6120 -4.1750 20 6 3.6007 -3.6200 -5.1415 21 6 3.9893 -2.4392 -5.7472 22 6 3.3899 -1.2477 -5.3889 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.6055 -0.2619 2.1369 27 1 1.7516 -1.7716 1.2053 28 1 6.0254 -1.5060 3.1494 29 1 0.6199 1.9554 -3.0713 30 1 1.5362 0.6118 -4.7351 31 1 1.2416 -2.4172 -3.0514 32 1 2.3105 -4.5359 -3.7036 33 1 4.0710 -4.5503 -5.4234 34 1 4.7623 -2.4487 -6.5012 35 1 3.6941 -0.3257 -5.8619 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718933713.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:58 Heat of formation + Delta-G solvation = 26.507561 kcal Electronic energy + Delta-G solvation = -17220.936048 eV Core-core repulsion = 14537.331740 eV Total energy + Delta-G solvation = -2683.604308 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.57032 -37.94322 -36.45878 -34.34886 -33.61717 -31.82023 -29.89392 -29.49897 -24.91032 -24.65475 -23.28964 -23.05292 -21.80989 -18.92143 -18.85708 -18.53708 -17.08327 -16.89513 -16.42515 -16.08066 -15.75844 -14.89431 -14.84987 -14.46502 -14.21919 -14.10144 -13.94847 -13.48087 -13.31870 -13.03226 -12.60221 -12.50440 -12.20799 -11.99816 -11.75424 -11.59884 -11.40239 -10.96770 -10.77906 -10.70258 -10.42845 -9.77369 -8.87715 -8.68105 -8.22914 -6.26965 0.31309 0.40183 0.56746 1.33311 1.39066 1.40399 1.50750 1.52114 2.39550 2.40132 2.93726 3.12054 4.04761 4.12038 4.14457 4.33610 4.35938 4.43048 4.60351 4.63315 4.65340 4.83899 4.96193 5.06666 5.15705 5.18307 5.36940 5.38860 5.44440 5.54748 5.65709 5.68370 5.83727 6.08561 6.31946 6.37267 6.79624 7.16494 7.35874 8.93066 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.019553 B = 0.006125 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.636868 B = 4569.986758 C = 5375.777647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.052 4.052 3 H 0.070 0.930 4 C 0.003 3.997 5 C -0.523 4.523 6 H 0.039 0.961 7 C 0.009 3.991 8 N -0.948 5.948 9 Si 0.942 3.058 10 H -0.266 1.266 11 H -0.286 1.286 12 H -0.244 1.244 13 S -0.021 6.021 14 C 0.390 3.610 15 N -0.765 5.765 16 N -0.682 5.682 17 C 0.131 3.869 18 C -0.154 4.154 19 C -0.103 4.103 20 C -0.139 4.139 21 C -0.102 4.102 22 C -0.151 4.151 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.080 0.920 26 H 0.040 0.960 27 H 0.027 0.973 28 H 0.265 0.735 29 H 0.337 0.663 30 H 0.415 0.585 31 H 0.126 0.874 32 H 0.141 0.859 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.843 -3.640 -16.257 18.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.181 4.181 3 H 0.088 0.912 4 C -0.035 4.035 5 C -0.561 4.561 6 H 0.057 0.943 7 C -0.188 4.188 8 N -0.589 5.589 9 Si 0.765 3.235 10 H -0.191 1.191 11 H -0.212 1.212 12 H -0.167 1.167 13 S 0.207 5.793 14 C 0.002 3.998 15 N -0.404 5.404 16 N -0.321 5.321 17 C 0.035 3.965 18 C -0.176 4.176 19 C -0.121 4.121 20 C -0.158 4.158 21 C -0.121 4.121 22 C -0.172 4.172 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.155 0.845 30 H 0.254 0.746 31 H 0.144 0.856 32 H 0.158 0.842 33 H 0.165 0.835 34 H 0.169 0.831 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.411 -4.370 -15.266 17.969 hybrid contribution -0.453 1.460 -0.377 1.574 sum -8.864 -2.910 -15.643 18.214 Atomic orbital electron populations 1.22049 0.91757 1.02356 1.03497 1.23181 0.99339 1.01131 0.94447 0.91159 1.19473 0.94833 0.96134 0.93106 1.21369 0.91656 1.34377 1.08697 0.94313 1.25914 0.95500 0.96931 1.00462 1.70066 1.08506 1.46915 1.33429 0.85781 0.79922 0.79580 0.78189 1.19130 1.21161 1.16724 1.86520 1.68819 1.28177 0.95738 1.24917 0.91214 0.96550 0.87134 1.70451 1.23112 1.07054 1.39787 1.43176 1.64431 1.19660 1.04787 1.17992 0.94815 0.85550 0.98101 1.21335 1.02478 0.92181 1.01624 1.21292 0.96162 0.97719 0.96966 1.21496 0.97826 0.99479 0.96966 1.21332 0.99331 0.91605 0.99786 1.21223 0.95661 1.00050 1.00277 0.92091 0.91728 0.90170 0.94184 0.95450 0.92618 0.84456 0.74563 0.85580 0.84151 0.83480 0.83139 0.84535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.64 8.97 71.98 0.65 -3.99 16 2 C -0.05 -2.14 2.15 30.59 0.07 -2.08 16 3 H 0.07 3.18 7.98 -2.40 -0.02 3.16 16 4 C 0.00 0.16 3.51 29.84 0.10 0.26 16 5 C -0.52 -30.04 9.09 25.60 0.23 -29.81 16 6 H 0.04 2.49 7.84 -2.91 -0.02 2.46 16 7 C 0.01 0.52 5.47 84.65 0.46 0.98 16 8 N -0.95 -59.75 13.96 21.45 0.30 -59.45 16 9 Si 0.94 43.94 27.47 68.60 1.88 45.82 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.24 -10.46 6.54 99.48 0.65 -9.81 16 13 S -0.02 -0.81 16.92 -56.49 -0.96 -1.77 16 14 C 0.39 12.72 7.76 179.41 1.39 14.11 16 15 N -0.76 -24.56 10.65 -56.56 -0.60 -25.16 16 16 N -0.68 -17.89 5.44 -186.96 -1.02 -18.91 16 17 C 0.13 3.50 5.94 38.17 0.23 3.73 16 18 C -0.15 -4.24 7.88 22.39 0.18 -4.06 16 19 C -0.10 -2.41 10.04 22.25 0.22 -2.19 16 20 C -0.14 -2.79 10.04 22.29 0.22 -2.57 16 21 C -0.10 -2.00 10.04 22.25 0.22 -1.78 16 22 C -0.15 -3.40 9.97 22.39 0.22 -3.18 16 23 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.08 2.64 5.68 -2.39 -0.01 2.63 16 26 H 0.04 1.84 7.20 -2.38 -0.02 1.82 16 27 H 0.03 1.24 7.57 -2.39 -0.02 1.22 16 28 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 29 H 0.34 9.07 8.81 -92.71 -0.82 8.25 16 30 H 0.41 8.43 8.84 -92.71 -0.82 7.61 16 31 H 0.13 3.69 6.37 -2.98 -0.02 3.67 16 32 H 0.14 2.75 8.06 -2.91 -0.02 2.72 16 33 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 34 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 35 H 0.14 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -67.87 303.17 3.22 -64.64 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: -0.58 Total: 25.38 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: 4.20 Total: -30.57 kcal Atomic # 7 Polarization: -102.19 SS G_CDS: -1.32 Total: -103.51 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.82 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -0.96 Total: -1.77 kcal Total: -67.87 3.22 -64.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718933713.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.152 kcal (2) G-P(sol) polarization free energy of solvation -67.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds