Wall clock time and date at job start Mon Mar 30 2020 06:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.47154 * 2 1 4 4 C 1.53002 * 109.46825 * 240.00707 * 2 1 3 5 5 C 1.50702 * 109.47005 * 174.99916 * 4 2 1 6 6 H 1.08005 * 119.99847 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00335 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00342 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99908 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46997 * 89.99962 * 9 7 5 11 11 H 1.48499 * 109.47343 * 210.00387 * 9 7 5 12 12 H 1.48504 * 109.47172 * 330.00274 * 9 7 5 13 13 S 1.80994 * 109.46991 * 120.00760 * 2 1 3 14 14 C 1.76197 * 100.00057 * 294.99661 * 13 2 1 15 15 N 1.30430 * 120.00031 * 0.02562 * 14 13 2 16 16 N 1.37734 * 120.00219 * 179.97438 * 14 13 2 17 17 C 1.39858 * 119.99767 * 5.66265 * 16 14 13 18 18 C 1.38889 * 120.07595 * 42.41202 * 17 16 14 19 19 C 1.38102 * 119.93299 * 179.79420 * 18 17 16 20 20 C 1.38286 * 120.07228 * 0.45722 * 19 18 17 21 21 C 1.38294 * 120.14198 * 359.79377 * 20 19 18 22 22 C 1.38107 * 120.06844 * 359.97438 * 21 20 19 23 23 H 1.08997 * 109.47051 * 59.99801 * 1 2 3 24 24 H 1.08998 * 109.46879 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46903 * 299.99109 * 1 2 3 26 26 H 1.09002 * 109.47287 * 294.99738 * 4 2 1 27 27 H 1.09000 * 109.47559 * 54.99891 * 4 2 1 28 28 H 0.97006 * 120.00305 * 179.97438 * 8 7 5 29 29 H 0.96996 * 120.00042 * 174.69808 * 15 14 13 30 30 H 0.96996 * 120.00039 * 185.66373 * 16 14 13 31 31 H 1.08002 * 120.03321 * 0.02562 * 18 17 16 32 32 H 1.07998 * 119.96620 * 180.23274 * 19 18 17 33 33 H 1.08000 * 119.93586 * 179.77307 * 20 19 18 34 34 H 1.07998 * 119.96519 * 179.97438 * 21 20 19 35 35 H 1.08001 * 120.03144 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3129 6 1 4.0790 -0.0861 -0.5392 7 6 4.2305 -1.1932 -2.3580 8 7 5.5411 -1.1009 -2.4132 9 14 3.3017 -2.1095 -3.6949 10 1 2.9400 -1.1651 -4.7824 11 1 4.1605 -3.1899 -4.2428 12 1 2.0661 -2.7017 -3.1223 13 16 2.1333 -0.8534 1.4777 14 6 1.5440 0.2419 2.7257 15 7 0.8765 1.3118 2.3922 16 7 1.7873 -0.0320 4.0534 17 6 2.6013 -1.1131 4.4066 18 6 3.7741 -1.3598 3.7046 19 6 4.5779 -2.4255 4.0585 20 6 4.2114 -3.2523 5.1047 21 6 3.0417 -3.0126 5.8024 22 6 2.2360 -1.9457 5.4564 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.7517 -1.7714 -1.2058 27 1 1.6054 -0.2615 -2.1371 28 1 6.0256 -1.5082 -3.1483 29 1 0.4861 1.8737 3.0797 30 1 1.3940 0.5247 4.7434 31 1 4.0590 -0.7166 2.8851 32 1 5.4918 -2.6156 3.5155 33 1 4.8398 -4.0873 5.3772 34 1 2.7581 -3.6604 6.6186 35 1 1.3224 -1.7592 6.0015 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718933715.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:59 Heat of formation + Delta-G solvation = 26.902214 kcal Electronic energy + Delta-G solvation = -17245.890608 eV Core-core repulsion = 14562.303413 eV Total energy + Delta-G solvation = -2683.587195 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.57840 -37.95171 -36.46243 -34.35507 -33.61853 -31.81425 -29.87612 -29.52153 -24.89959 -24.68265 -23.27687 -23.02566 -21.84457 -18.89226 -18.86340 -18.53467 -17.19687 -16.80727 -16.40408 -16.01661 -15.82738 -14.92996 -14.80964 -14.47900 -14.19976 -14.10658 -13.99665 -13.53625 -13.28124 -12.96338 -12.52664 -12.49763 -12.34737 -12.00029 -11.73578 -11.56727 -11.38928 -10.98527 -10.91526 -10.70080 -10.37251 -9.79170 -8.87065 -8.65733 -8.22390 -6.25913 0.29045 0.41279 0.57654 1.31899 1.38585 1.40325 1.49870 1.52097 2.39621 2.39907 2.92929 3.12475 4.05270 4.12428 4.13984 4.32158 4.36322 4.43434 4.59663 4.62982 4.64849 4.84718 4.95677 5.05317 5.15876 5.16529 5.37059 5.37788 5.44096 5.55536 5.65533 5.69614 5.83307 6.08612 6.32800 6.37689 6.80222 7.16837 7.36690 8.93234 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.019761 B = 0.006281 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.577013 B = 4456.471510 C = 5423.933421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.051 4.051 3 H 0.073 0.927 4 C 0.003 3.997 5 C -0.520 4.520 6 H 0.042 0.958 7 C 0.011 3.989 8 N -0.947 5.947 9 Si 0.939 3.061 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.247 1.247 13 S -0.024 6.024 14 C 0.391 3.609 15 N -0.764 5.764 16 N -0.681 5.681 17 C 0.134 3.866 18 C -0.156 4.156 19 C -0.106 4.106 20 C -0.135 4.135 21 C -0.098 4.098 22 C -0.143 4.143 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.026 0.974 27 H 0.038 0.962 28 H 0.265 0.735 29 H 0.338 0.662 30 H 0.416 0.584 31 H 0.112 0.888 32 H 0.126 0.874 33 H 0.147 0.853 34 H 0.157 0.843 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.898 -3.526 16.720 19.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.180 4.180 3 H 0.091 0.909 4 C -0.036 4.036 5 C -0.559 4.559 6 H 0.060 0.940 7 C -0.187 4.187 8 N -0.587 5.587 9 Si 0.763 3.237 10 H -0.192 1.192 11 H -0.211 1.211 12 H -0.170 1.170 13 S 0.205 5.795 14 C 0.002 3.998 15 N -0.404 5.404 16 N -0.320 5.320 17 C 0.038 3.962 18 C -0.179 4.179 19 C -0.125 4.125 20 C -0.154 4.154 21 C -0.116 4.116 22 C -0.164 4.164 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.099 0.901 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.157 0.843 30 H 0.256 0.744 31 H 0.130 0.870 32 H 0.144 0.856 33 H 0.165 0.835 34 H 0.175 0.825 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -8.349 -4.190 15.722 18.288 hybrid contribution -0.503 1.417 0.200 1.516 sum -8.852 -2.773 15.922 18.427 Atomic orbital electron populations 1.22070 0.91967 1.02186 1.03582 1.23171 0.99231 1.01188 0.94436 0.90860 1.19476 0.95034 0.96109 0.92993 1.21351 0.91506 1.34298 1.08727 0.93996 1.25872 0.95492 0.96891 1.00399 1.70055 1.08390 1.46871 1.33416 0.85817 0.79540 0.78868 0.79463 1.19205 1.21095 1.17011 1.86565 1.68302 1.28646 0.96019 1.24897 0.93011 0.94717 0.87139 1.70447 1.23109 1.07385 1.39422 1.43151 1.52330 1.31904 1.04610 1.17935 0.90554 0.90068 0.97659 1.21303 0.94432 1.00905 1.01221 1.21217 0.99602 0.94297 0.97411 1.21467 0.98102 1.00124 0.95700 1.21354 0.93766 0.96657 0.99824 1.21222 1.01284 0.95050 0.98852 0.91631 0.92404 0.90123 0.95577 0.94351 0.92639 0.84342 0.74418 0.87011 0.85552 0.83481 0.82512 0.83730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.73 8.97 71.98 0.65 -4.09 16 2 C -0.05 -2.12 2.15 30.60 0.07 -2.06 16 3 H 0.07 3.31 7.98 -2.40 -0.02 3.29 16 4 C 0.00 0.12 3.51 29.85 0.10 0.23 16 5 C -0.52 -29.74 9.09 25.60 0.23 -29.50 16 6 H 0.04 2.65 7.84 -2.91 -0.02 2.63 16 7 C 0.01 0.61 5.47 84.66 0.46 1.07 16 8 N -0.95 -59.19 13.96 21.45 0.30 -58.89 16 9 Si 0.94 44.02 27.47 68.60 1.88 45.91 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 13 S -0.02 -0.93 16.91 -56.49 -0.96 -1.88 16 14 C 0.39 12.76 7.76 179.40 1.39 14.15 16 15 N -0.76 -24.51 10.65 -56.56 -0.60 -25.11 16 16 N -0.68 -17.75 5.44 -186.96 -1.02 -18.77 16 17 C 0.13 3.58 5.94 38.17 0.23 3.81 16 18 C -0.16 -4.88 7.88 22.39 0.18 -4.71 16 19 C -0.11 -2.88 10.04 22.25 0.22 -2.66 16 20 C -0.14 -2.79 10.04 22.29 0.22 -2.57 16 21 C -0.10 -1.76 10.04 22.25 0.22 -1.54 16 22 C -0.14 -2.94 9.97 22.39 0.22 -2.72 16 23 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.08 2.66 5.68 -2.39 -0.01 2.64 16 26 H 0.03 1.22 7.20 -2.39 -0.02 1.20 16 27 H 0.04 1.75 7.57 -2.39 -0.02 1.73 16 28 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 29 H 0.34 8.97 8.81 -92.71 -0.82 8.15 16 30 H 0.42 8.21 8.84 -92.71 -0.82 7.39 16 31 H 0.11 4.17 6.37 -3.00 -0.02 4.15 16 32 H 0.13 3.32 8.06 -2.91 -0.02 3.30 16 33 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 35 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -67.27 303.16 3.23 -64.05 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: -0.58 Total: 25.26 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: 4.20 Total: -30.57 kcal Atomic # 7 Polarization: -101.45 SS G_CDS: -1.32 Total: -102.77 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.91 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -0.96 Total: -1.88 kcal Total: -67.27 3.23 -64.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718933715.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.952 kcal (2) G-P(sol) polarization free energy of solvation -67.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds