Wall clock time and date at job start Mon Mar 30 2020 06:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46990 * 2 1 4 4 H 1.09000 * 109.47120 * 54.99893 * 3 2 1 5 5 C 1.50702 * 109.47146 * 295.00066 * 3 2 1 6 6 O 1.20828 * 119.99715 * 239.99920 * 5 3 2 7 7 O 1.34219 * 120.00071 * 59.99775 * 5 3 2 8 8 C 1.50701 * 109.47426 * 174.99612 * 3 2 1 9 9 C 1.38169 * 120.02515 * 59.95462 * 8 3 2 10 10 C 1.38241 * 120.05773 * 180.02562 * 9 8 3 11 11 C 1.50696 * 119.94537 * 180.02562 * 10 9 8 12 12 C 1.50707 * 109.46998 * 269.97600 * 11 10 9 13 13 H 1.07994 * 120.00058 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99584 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00266 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99503 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47162 * 90.00297 * 16 14 12 18 18 H 1.48504 * 109.47035 * 209.99851 * 16 14 12 19 19 H 1.48492 * 109.47355 * 330.00087 * 16 14 12 20 20 C 1.38288 * 120.10640 * 359.97438 * 10 9 8 21 21 C 1.38116 * 120.06137 * 0.02562 * 20 10 9 22 22 C 1.38703 * 120.03206 * 240.00550 * 8 3 2 23 23 O 1.35903 * 120.05406 * 0.24353 * 22 8 3 24 24 H 1.08998 * 109.46726 * 60.00639 * 1 2 3 25 25 H 1.09008 * 109.46628 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47370 * 300.00153 * 1 2 3 27 27 H 1.08993 * 109.47370 * 239.99846 * 2 1 3 28 28 H 1.09006 * 109.46555 * 119.99630 * 2 1 3 29 29 H 0.96707 * 116.99761 * 180.02562 * 7 5 3 30 30 H 1.08005 * 119.96835 * 0.02562 * 9 8 3 31 31 H 1.08996 * 109.47212 * 29.97864 * 11 10 9 32 32 H 1.09001 * 109.47288 * 149.97992 * 11 10 9 33 33 H 0.97000 * 119.99843 * 180.02562 * 15 14 12 34 34 H 1.08002 * 119.96728 * 179.97438 * 20 10 9 35 35 H 1.08000 * 120.03152 * 179.97438 * 21 20 10 36 36 H 0.96696 * 114.00399 * 269.72715 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6413 2.1162 -1.2877 6 8 2.4898 2.5531 -2.0288 7 8 0.3438 2.2310 -1.6113 8 6 3.5419 1.4444 0.1239 9 6 4.3154 0.8164 -0.8334 10 6 5.6932 0.8173 -0.7201 11 6 6.5344 0.1322 -1.7660 12 6 6.7550 -1.3053 -1.3707 13 1 6.3283 -1.6848 -0.4541 14 6 7.5006 -2.1361 -2.1799 15 7 8.0198 -1.6740 -3.2964 16 14 7.7734 -3.9180 -1.6903 17 1 6.6853 -4.7579 -2.2524 18 1 9.0808 -4.3823 -2.2198 19 1 7.7709 -4.0305 -0.2096 20 6 6.3007 1.4469 0.3509 21 6 5.5320 2.0760 1.3105 22 6 4.1489 2.0756 1.1996 23 8 3.3900 2.6887 2.1457 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.1371 2.6705 -2.4476 30 1 3.8432 0.3245 -1.6709 31 1 6.0215 0.1702 -2.7269 32 1 7.4964 0.6383 -1.8473 33 1 8.5441 -2.2586 -3.8658 34 1 7.3773 1.4458 0.4374 35 1 6.0070 2.5671 2.1469 36 1 3.2077 3.6202 1.9608 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725447457.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:27 Heat of formation + Delta-G solvation = -130.520248 kcal Electronic energy + Delta-G solvation = -19941.447283 eV Core-core repulsion = 16775.988115 eV Total energy + Delta-G solvation = -3165.459167 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.65797 -39.17517 -36.57282 -36.06462 -35.16986 -33.09880 -30.77076 -30.51223 -27.35274 -26.44040 -23.29753 -23.10754 -22.40758 -20.77912 -19.56308 -18.12264 -17.84403 -16.79942 -16.32331 -15.66133 -15.30533 -15.12747 -14.73848 -14.27099 -13.87189 -13.41811 -13.26922 -13.11183 -12.54120 -12.49233 -11.96581 -11.77955 -11.67871 -11.60356 -11.12834 -11.07637 -10.98986 -10.83551 -10.57062 -10.52413 -10.27256 -9.95874 -9.56943 -9.43599 -8.43313 -8.30345 -7.69003 -6.04794 -4.09045 1.75090 1.93574 2.29563 3.13075 3.29741 3.36078 3.40259 4.19162 4.44349 4.56426 4.66423 4.90706 5.08695 5.29506 5.33390 5.43488 5.49421 5.53543 5.79419 5.90785 6.01933 6.05221 6.07621 6.24073 6.38645 6.42094 6.49456 6.53904 6.89074 7.05944 7.12651 7.38029 7.56446 7.81544 7.90931 7.93976 7.96836 8.30364 8.96257 9.54819 11.05022 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.019062 B = 0.005729 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.547172 B = 4886.306453 C = 5380.490580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.112 4.112 3 C -0.029 4.029 4 H 0.116 0.884 5 C 0.477 3.523 6 O -0.498 6.498 7 O -0.514 6.514 8 C -0.110 4.110 9 C -0.075 4.075 10 C -0.039 4.039 11 C 0.048 3.952 12 C -0.512 4.512 13 H 0.058 0.942 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.103 4.103 21 C -0.146 4.146 22 C 0.079 3.921 23 O -0.500 6.500 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.402 0.598 30 H 0.118 0.882 31 H 0.030 0.970 32 H 0.030 0.970 33 H 0.262 0.738 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.984 8.103 6.703 17.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.150 4.150 3 C -0.048 4.048 4 H 0.134 0.866 5 C 0.319 3.681 6 O -0.384 6.384 7 O -0.327 6.327 8 C -0.111 4.111 9 C -0.093 4.093 10 C -0.039 4.039 11 C 0.011 3.989 12 C -0.551 4.551 13 H 0.076 0.924 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.722 3.278 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.122 4.122 21 C -0.164 4.164 22 C 0.035 3.965 23 O -0.308 6.308 24 H 0.094 0.906 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.261 0.739 30 H 0.136 0.864 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -13.520 7.416 6.986 16.929 hybrid contribution 0.125 -0.209 -0.570 0.620 sum -13.394 7.207 6.416 16.508 Atomic orbital electron populations 1.22002 0.94817 1.01813 1.03130 1.21535 0.96397 0.93042 1.04028 1.19856 0.93743 0.98025 0.93179 0.86617 1.23574 0.79742 0.76580 0.88224 1.90780 1.51449 1.44911 1.51298 1.84620 1.28612 1.74344 1.45080 1.19428 0.92570 1.03104 0.95950 1.20728 0.93485 0.97736 0.97358 1.20701 0.93881 0.92927 0.96373 1.18359 0.94061 0.94654 0.91816 1.21058 1.32506 0.94284 1.07209 0.92420 1.25010 0.95592 0.98744 0.94941 1.69961 1.34786 1.36001 1.12482 0.86544 0.77569 0.84787 0.78872 1.20591 1.21134 1.19761 1.21035 0.99987 0.97369 0.93761 1.21218 0.92557 1.02721 0.99906 1.17989 0.89219 0.99562 0.89743 1.84827 1.71917 1.27931 1.46172 0.90638 0.92628 0.92715 0.90946 0.90018 0.73925 0.86359 0.95222 0.95166 0.92817 0.85809 0.86217 0.76845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.55 37.16 0.36 -1.30 16 2 C -0.11 -1.44 5.13 -26.73 -0.14 -1.58 16 3 C -0.03 -0.40 2.46 -92.92 -0.23 -0.63 16 4 H 0.12 1.39 6.99 -51.93 -0.36 1.03 16 5 C 0.48 6.60 7.47 36.01 0.27 6.87 16 6 O -0.50 -8.79 15.87 -18.75 -0.30 -9.09 16 7 O -0.51 -5.12 10.57 -39.23 -0.41 -5.53 16 8 C -0.11 -1.88 4.41 -104.47 -0.46 -2.34 16 9 C -0.07 -1.51 7.63 -39.61 -0.30 -1.82 16 10 C -0.04 -0.86 5.07 -104.60 -0.53 -1.39 16 11 C 0.05 1.25 5.10 -29.03 -0.15 1.10 16 12 C -0.51 -14.37 9.09 -34.44 -0.31 -14.69 16 13 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 16 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 C -0.10 -2.03 9.69 -39.61 -0.38 -2.41 16 21 C -0.15 -2.48 9.99 -39.44 -0.39 -2.87 16 22 C 0.08 1.29 6.68 -39.22 -0.26 1.03 16 23 O -0.50 -6.69 12.27 -19.43 -0.24 -6.93 16 24 H 0.07 0.77 5.46 -51.93 -0.28 0.49 16 25 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.07 1.01 7.57 -51.93 -0.39 0.61 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.40 2.43 9.10 45.56 0.41 2.84 16 30 H 0.12 2.45 7.58 -52.48 -0.40 2.05 16 31 H 0.03 0.82 8.08 -51.93 -0.42 0.40 16 32 H 0.03 0.82 8.08 -51.93 -0.42 0.40 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 35 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.38 3.35 9.06 45.56 0.41 3.76 16 LS Contribution 309.12 15.07 4.66 4.66 Total: -1.00 -33.17 309.12 -6.31 -39.49 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -3.10 Total: 5.10 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -2.63 Total: -18.46 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.74 Total: -25.78 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.95 Total: -21.55 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.17 -6.31 -39.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725447457.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.032 kcal (2) G-P(sol) polarization free energy of solvation -33.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds