Wall clock time and date at job start Mon Mar 30 2020 06:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46990 * 2 1 4 4 H 1.09000 * 109.47120 * 54.99893 * 3 2 1 5 5 C 1.50702 * 109.47146 * 295.00066 * 3 2 1 6 6 O 1.20828 * 119.99715 * 239.99920 * 5 3 2 7 7 O 1.34219 * 120.00071 * 59.99775 * 5 3 2 8 8 C 1.50701 * 109.47426 * 174.99612 * 3 2 1 9 9 C 1.38169 * 120.02515 * 59.95462 * 8 3 2 10 10 C 1.38241 * 120.05773 * 180.02562 * 9 8 3 11 11 C 1.50696 * 119.94537 * 180.02562 * 10 9 8 12 12 C 1.50707 * 109.46998 * 269.97600 * 11 10 9 13 13 H 1.07994 * 120.00058 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99584 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00266 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99503 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47162 * 90.00297 * 16 14 12 18 18 H 1.48504 * 109.47035 * 209.99851 * 16 14 12 19 19 H 1.48492 * 109.47355 * 330.00087 * 16 14 12 20 20 C 1.38288 * 120.10640 * 359.97438 * 10 9 8 21 21 C 1.38116 * 120.06137 * 0.02562 * 20 10 9 22 22 C 1.38703 * 120.03206 * 240.00550 * 8 3 2 23 23 O 1.35903 * 120.05406 * 0.24353 * 22 8 3 24 24 H 1.08998 * 109.46726 * 60.00639 * 1 2 3 25 25 H 1.09008 * 109.46628 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47370 * 300.00153 * 1 2 3 27 27 H 1.08993 * 109.47370 * 239.99846 * 2 1 3 28 28 H 1.09006 * 109.46555 * 119.99630 * 2 1 3 29 29 H 0.96707 * 116.99761 * 180.02562 * 7 5 3 30 30 H 1.08005 * 119.96835 * 0.02562 * 9 8 3 31 31 H 1.08996 * 109.47212 * 29.97864 * 11 10 9 32 32 H 1.09001 * 109.47288 * 149.97992 * 11 10 9 33 33 H 0.97000 * 119.99843 * 180.02562 * 15 14 12 34 34 H 1.08002 * 119.96728 * 179.97438 * 20 10 9 35 35 H 1.08000 * 120.03152 * 179.97438 * 21 20 10 36 36 H 0.96696 * 114.00399 * 269.72715 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6413 2.1162 -1.2877 6 8 2.4898 2.5531 -2.0288 7 8 0.3438 2.2310 -1.6113 8 6 3.5419 1.4444 0.1239 9 6 4.3154 0.8164 -0.8334 10 6 5.6932 0.8173 -0.7201 11 6 6.5344 0.1322 -1.7660 12 6 6.7550 -1.3053 -1.3707 13 1 6.3283 -1.6848 -0.4541 14 6 7.5006 -2.1361 -2.1799 15 7 8.0198 -1.6740 -3.2964 16 14 7.7734 -3.9180 -1.6903 17 1 6.6853 -4.7579 -2.2524 18 1 9.0808 -4.3823 -2.2198 19 1 7.7709 -4.0305 -0.2096 20 6 6.3007 1.4469 0.3509 21 6 5.5320 2.0760 1.3105 22 6 4.1489 2.0756 1.1996 23 8 3.3900 2.6887 2.1457 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 0.1371 2.6705 -2.4476 30 1 3.8432 0.3245 -1.6709 31 1 6.0215 0.1702 -2.7269 32 1 7.4964 0.6383 -1.8473 33 1 8.5441 -2.2586 -3.8658 34 1 7.3773 1.4458 0.4374 35 1 6.0070 2.5671 2.1469 36 1 3.2077 3.6202 1.9608 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725447457.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:27 Heat of formation + Delta-G solvation = -153.444296 kcal Electronic energy + Delta-G solvation = -19942.441344 eV Core-core repulsion = 16775.988115 eV Total energy + Delta-G solvation = -3166.453229 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.82483 -40.44323 -37.88858 -37.11086 -36.31791 -35.11914 -32.38215 -31.89559 -28.83757 -27.98065 -25.16141 -24.22020 -23.70479 -22.15272 -20.84951 -19.28986 -18.96381 -18.53000 -17.90937 -16.87054 -16.74801 -16.47110 -16.29454 -15.74804 -14.85231 -14.68331 -14.61675 -14.52679 -14.30407 -13.75303 -13.53625 -13.23938 -13.10716 -12.90748 -12.66724 -12.53684 -12.42929 -12.35966 -12.00117 -11.79276 -11.57158 -11.43290 -11.35449 -11.25242 -10.63038 -9.73159 -9.24120 -8.21816 -6.36085 0.33694 0.47978 1.21269 1.38196 1.39483 1.51243 2.12404 2.37997 2.82988 3.08467 3.32100 3.46495 3.81731 4.04942 4.11800 4.29477 4.37807 4.42585 4.52994 4.61163 4.71524 4.90885 4.99621 5.04103 5.16532 5.24472 5.30985 5.32409 5.44766 5.52548 5.55279 5.63183 5.71832 5.95167 6.01150 6.16008 6.76493 6.88117 7.02665 7.32675 8.87626 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.019062 B = 0.005729 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.547172 B = 4886.306453 C = 5380.490580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.027 4.027 4 H 0.144 0.856 5 C 0.487 3.513 6 O -0.545 6.545 7 O -0.497 6.497 8 C -0.109 4.109 9 C -0.085 4.085 10 C -0.075 4.075 11 C 0.058 3.942 12 C -0.528 4.528 13 H 0.056 0.944 14 C 0.004 3.996 15 N -0.931 5.931 16 Si 0.967 3.033 17 H -0.272 1.272 18 H -0.278 1.278 19 H -0.264 1.264 20 C -0.113 4.113 21 C -0.140 4.140 22 C 0.098 3.902 23 O -0.493 6.493 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.423 0.577 30 H 0.099 0.901 31 H -0.004 1.004 32 H 0.006 0.994 33 H 0.266 0.734 34 H 0.123 0.877 35 H 0.153 0.847 36 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.023 8.339 9.139 20.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.046 4.046 4 H 0.161 0.839 5 C 0.330 3.670 6 O -0.434 6.434 7 O -0.310 6.310 8 C -0.110 4.110 9 C -0.104 4.104 10 C -0.075 4.075 11 C 0.021 3.979 12 C -0.566 4.566 13 H 0.074 0.926 14 C -0.194 4.194 15 N -0.571 5.571 16 Si 0.790 3.210 17 H -0.197 1.197 18 H -0.203 1.203 19 H -0.188 1.188 20 C -0.131 4.131 21 C -0.158 4.158 22 C 0.054 3.946 23 O -0.305 6.305 24 H 0.095 0.905 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.284 0.716 30 H 0.117 0.883 31 H 0.014 0.986 32 H 0.024 0.976 33 H 0.075 0.925 34 H 0.141 0.859 35 H 0.171 0.829 36 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -15.607 7.683 9.426 19.785 hybrid contribution 0.628 -0.165 -1.290 1.444 sum -14.979 7.518 8.136 18.631 Atomic orbital electron populations 1.21957 0.92467 1.02668 1.03945 1.21529 0.98359 0.92140 1.02943 1.19928 0.91450 0.98995 0.94234 0.83854 1.23513 0.80294 0.75503 0.87691 1.90786 1.52913 1.47066 1.52667 1.84553 1.26147 1.73990 1.46358 1.19669 0.94462 1.01724 0.95106 1.20569 0.92939 0.98822 0.98041 1.20389 0.94452 0.95679 0.96997 1.18069 0.93254 0.94632 0.91901 1.21368 1.32553 0.95481 1.07214 0.92562 1.25959 0.95101 1.03620 0.94745 1.70093 1.35503 1.37862 1.13653 0.85424 0.77789 0.78816 0.78924 1.19695 1.20342 1.18784 1.21049 1.00364 0.97803 0.93901 1.21489 0.92888 1.01653 0.99773 1.17993 0.89252 0.98256 0.89104 1.84763 1.71027 1.29944 1.44739 0.90503 0.91865 0.91112 0.93072 0.90204 0.71568 0.88321 0.98610 0.97620 0.92525 0.85860 0.82916 0.73681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.55 71.98 0.69 -2.04 16 2 C -0.11 -2.70 5.13 30.60 0.16 -2.54 16 3 C -0.03 -0.69 2.46 -12.29 -0.03 -0.72 16 4 H 0.14 2.85 6.99 -2.39 -0.02 2.83 16 5 C 0.49 12.74 7.47 71.24 0.53 13.28 16 6 O -0.54 -19.26 15.87 21.96 0.35 -18.91 16 7 O -0.50 -8.58 10.57 -51.31 -0.54 -9.12 16 8 C -0.11 -3.62 4.41 -19.77 -0.09 -3.71 16 9 C -0.09 -3.59 7.63 22.25 0.17 -3.42 16 10 C -0.08 -3.49 5.07 -19.85 -0.10 -3.59 16 11 C 0.06 3.28 5.10 29.10 0.15 3.42 16 12 C -0.53 -30.96 9.09 25.60 0.23 -30.73 16 13 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 14 C 0.00 0.22 5.46 84.65 0.46 0.69 16 15 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 16 Si 0.97 44.91 29.54 68.60 2.03 46.93 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 20 C -0.11 -4.50 9.69 22.25 0.22 -4.28 16 21 C -0.14 -4.47 9.99 22.36 0.22 -4.25 16 22 C 0.10 2.97 6.68 22.50 0.15 3.12 16 23 O -0.49 -10.90 12.27 -92.45 -1.13 -12.03 16 24 H 0.08 1.34 5.46 -2.39 -0.01 1.33 16 25 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 26 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.05 1.44 7.57 -2.39 -0.02 1.42 16 28 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 29 H 0.42 4.02 9.10 -74.05 -0.67 3.34 16 30 H 0.10 4.41 7.58 -2.91 -0.02 4.39 16 31 H 0.00 -0.27 8.08 -2.39 -0.02 -0.29 16 32 H 0.01 0.33 8.08 -2.39 -0.02 0.31 16 33 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 34 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 35 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 36 H 0.41 5.04 9.06 -74.06 -0.67 4.37 16 Total: -1.00 -74.89 309.12 3.51 -71.38 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -0.23 Total: 13.63 kcal Atomic # 6 Polarization: -37.54 SS G_CDS: 2.76 Total: -34.78 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.28 Total: -57.10 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -1.33 Total: -40.07 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -74.89 3.51 -71.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725447457.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.064 kcal (2) G-P(sol) polarization free energy of solvation -74.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds