Wall clock time and date at job start Mon Mar 30 2020 06:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38173 * 120.02920 * 2 1 4 4 C 1.38232 * 120.05823 * 180.02562 * 3 2 1 5 5 C 1.38294 * 120.11124 * 359.97438 * 4 3 2 6 6 C 1.38122 * 120.05499 * 359.97438 * 5 4 3 7 7 C 1.38705 * 120.02828 * 180.25270 * 2 1 3 8 8 O 1.35904 * 120.05924 * 0.02562 * 7 2 1 9 9 C 1.42900 * 117.00131 * 180.25191 * 8 7 2 10 10 C 1.50700 * 109.46759 * 179.97438 * 9 8 7 11 11 O 1.20821 * 120.00212 * 0.02562 * 10 9 8 12 12 O 1.34225 * 119.99623 * 179.97438 * 10 9 8 13 13 C 1.45203 * 116.99920 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47525 * 330.00589 * 13 12 10 15 15 C 1.53005 * 109.47211 * 90.00096 * 13 12 10 16 16 C 1.50701 * 109.47553 * 210.00166 * 13 12 10 17 17 H 1.07999 * 119.99513 * 359.97438 * 16 13 12 18 18 C 1.37872 * 120.00284 * 180.02562 * 16 13 12 19 19 N 1.31514 * 120.00049 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 120.00078 * 180.02562 * 18 16 13 21 21 H 1.48508 * 109.47150 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47048 * 119.99760 * 20 18 16 23 23 H 1.48498 * 109.47446 * 240.00209 * 20 18 16 24 24 H 1.08998 * 109.47168 * 89.99956 * 1 2 3 25 25 H 1.08993 * 109.47031 * 210.00405 * 1 2 3 26 26 H 1.09007 * 109.46737 * 330.00260 * 1 2 3 27 27 H 1.08008 * 119.97043 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.94710 * 179.97438 * 4 3 2 29 29 H 1.07999 * 119.97251 * 180.02562 * 5 4 3 30 30 H 1.08002 * 120.02504 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.46950 * 300.00206 * 9 8 7 32 32 H 1.08994 * 109.46928 * 60.00366 * 9 8 7 33 33 H 1.08994 * 109.47091 * 179.97438 * 15 13 12 34 34 H 1.09001 * 109.46946 * 300.00485 * 15 13 12 35 35 H 1.09004 * 109.46909 * 59.99689 * 15 13 12 36 36 H 0.97000 * 120.00303 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1963 0.0000 4 6 3.5808 1.1970 -0.0005 5 6 4.2752 0.0010 -0.0005 6 6 3.5887 -1.1975 0.0005 7 6 2.2011 -1.2009 -0.0053 8 8 1.5234 -2.3788 -0.0110 9 6 2.3035 -3.5761 -0.0107 10 6 1.3872 -4.7726 -0.0168 11 8 0.1892 -4.6160 -0.0215 12 8 1.9021 -6.0121 -0.0181 13 6 0.9602 -7.1172 -0.0246 14 1 0.0451 -6.8177 0.4863 15 6 0.6349 -7.5015 -1.4695 16 6 1.5679 -8.2996 0.6850 17 1 2.5627 -8.2279 1.0992 18 6 0.8543 -9.4732 0.8046 19 7 -0.3566 -9.5610 0.2990 20 14 1.6074 -10.9386 1.6850 21 1 2.9698 -10.5851 2.1584 22 1 0.7593 -11.3074 2.8468 23 1 1.6920 -12.0884 0.7490 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 1.6584 2.1316 -0.0004 28 1 4.1195 2.1331 -0.0010 29 1 5.3552 0.0042 -0.0005 30 1 4.1315 -2.1312 0.0009 31 1 2.9361 -3.5978 -0.8980 32 1 2.9285 -3.6022 0.8819 33 1 -0.0717 -8.3313 -1.4744 34 1 0.1954 -6.6463 -1.9828 35 1 1.5500 -7.8010 -1.9805 36 1 -0.8588 -10.3866 0.3835 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733707937.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:08 Heat of formation + Delta-G solvation = -105.822900 kcal Electronic energy + Delta-G solvation = -19222.989211 eV Core-core repulsion = 16058.601001 eV Total energy + Delta-G solvation = -3164.388210 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.47549 -39.42266 -37.47863 -35.67791 -33.33387 -32.92136 -30.44862 -29.82059 -28.35443 -26.76157 -25.36518 -22.96532 -21.67219 -21.46902 -19.70631 -18.23282 -17.13883 -16.58167 -16.32576 -16.07276 -15.69735 -15.16620 -14.72905 -14.46379 -14.37712 -13.51122 -13.28229 -13.18287 -12.68911 -12.33853 -12.31321 -12.08343 -11.85029 -11.44655 -11.32331 -11.14770 -11.05896 -10.97332 -10.88144 -10.41141 -10.32101 -9.71641 -9.60496 -8.96665 -8.96335 -8.54327 -8.22458 -6.22862 -4.30358 1.18118 1.31263 2.60050 2.82894 3.21353 3.28472 3.33639 3.62151 3.92541 4.30020 4.63090 4.72009 4.92591 4.96295 5.09739 5.11924 5.15860 5.26141 5.42303 5.57367 5.59208 5.70232 5.76308 6.16838 6.20725 6.33996 6.40456 6.57479 6.65579 6.83439 6.84913 7.07055 7.28403 7.54263 7.66580 7.87278 8.07274 8.53422 8.80836 9.35255 10.84641 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.040749 B = 0.003603 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.966305 B = 7770.347563 C = 8156.023696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.114 4.114 3 C -0.085 4.085 4 C -0.158 4.158 5 C -0.086 4.086 6 C -0.207 4.207 7 C 0.132 3.868 8 O -0.289 6.289 9 C 0.066 3.934 10 C 0.454 3.546 11 O -0.498 6.498 12 O -0.353 6.353 13 C 0.216 3.784 14 H 0.049 0.951 15 C -0.156 4.156 16 C -0.522 4.522 17 H 0.070 0.930 18 C 0.062 3.938 19 N -0.888 5.888 20 Si 0.914 3.086 21 H -0.270 1.270 22 H -0.281 1.281 23 H -0.281 1.281 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.127 0.873 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.131 0.869 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.017 0.983 35 H 0.038 0.962 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.328 18.056 -1.193 19.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.114 4.114 3 C -0.103 4.103 4 C -0.176 4.176 5 C -0.104 4.104 6 C -0.226 4.226 7 C 0.086 3.914 8 O -0.202 6.202 9 C -0.010 4.010 10 C 0.295 3.705 11 O -0.386 6.386 12 O -0.269 6.269 13 C 0.165 3.835 14 H 0.067 0.933 15 C -0.214 4.214 16 C -0.560 4.560 17 H 0.089 0.911 18 C -0.140 4.140 19 N -0.526 5.526 20 Si 0.740 3.260 21 H -0.194 1.194 22 H -0.207 1.207 23 H -0.207 1.207 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.145 0.855 28 H 0.140 0.860 29 H 0.142 0.858 30 H 0.149 0.851 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.036 0.964 35 H 0.057 0.943 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.581 17.856 -1.216 19.069 hybrid contribution 0.511 -0.909 0.361 1.104 sum 7.092 16.947 -0.855 18.391 Atomic orbital electron populations 1.20649 0.90294 1.03039 1.02536 1.19317 0.96801 0.90170 1.05131 1.20876 0.94126 0.96655 0.98678 1.21026 0.94212 0.98037 1.04369 1.20919 0.99770 0.91812 0.97945 1.21331 0.92890 0.99841 1.08521 1.18896 0.90461 0.85424 0.96599 1.86110 1.34438 1.11356 1.88312 1.21992 0.92723 0.81596 1.04738 1.22556 0.87922 0.85644 0.74378 1.90645 1.16623 1.86857 1.44497 1.86455 1.44461 1.14118 1.81914 1.20737 0.88136 0.79710 0.94959 0.93341 1.22182 1.01443 1.01331 0.96427 1.21053 1.02902 0.95510 1.36572 0.91143 1.24899 0.94840 0.98715 0.95543 1.69906 1.10556 1.27557 1.44567 0.86191 0.79281 0.81350 0.79144 1.19445 1.20698 1.20674 0.91279 0.90573 0.91802 0.85468 0.86037 0.85812 0.85086 0.88213 0.88144 0.88062 0.96397 0.94307 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 9.79 36.01 0.35 -0.91 16 2 C -0.11 -1.41 5.89 -104.47 -0.62 -2.03 16 3 C -0.09 -0.86 9.70 -39.61 -0.38 -1.25 16 4 C -0.16 -1.48 10.04 -39.56 -0.40 -1.88 16 5 C -0.09 -0.85 10.04 -39.60 -0.40 -1.25 16 6 C -0.21 -2.38 9.04 -39.43 -0.36 -2.73 16 7 C 0.13 1.81 6.66 -39.22 -0.26 1.55 16 8 O -0.29 -4.68 8.72 -39.39 -0.34 -5.03 16 9 C 0.07 1.00 5.33 36.01 0.19 1.19 16 10 C 0.45 9.53 8.01 36.01 0.29 9.82 16 11 O -0.50 -12.15 15.72 -25.47 -0.40 -12.55 16 12 O -0.35 -8.25 9.86 -39.24 -0.39 -8.64 16 13 C 0.22 5.80 2.56 -27.88 -0.07 5.73 16 14 H 0.05 1.43 7.16 -51.93 -0.37 1.06 16 15 C -0.16 -3.95 9.33 37.16 0.35 -3.60 16 16 C -0.52 -14.55 8.90 -34.44 -0.31 -14.85 16 17 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 18 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 19 N -0.89 -25.11 11.32 55.43 0.63 -24.48 16 20 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.08 1.03 7.54 -51.93 -0.39 0.64 16 26 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 27 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 28 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 29 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 30 H 0.13 1.29 6.30 -52.49 -0.33 0.96 16 31 H 0.10 1.24 7.66 -51.93 -0.40 0.84 16 32 H 0.10 1.27 7.66 -51.93 -0.40 0.87 16 33 H 0.10 2.73 6.07 -51.93 -0.32 2.42 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 312.25 15.07 4.71 4.71 Total: -1.00 -31.56 312.25 -7.23 -38.79 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -4.71 Total: -0.05 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -1.71 Total: -8.60 kcal Atomic # 7 Polarization: -25.11 SS G_CDS: 0.63 Total: -24.48 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -1.13 Total: -26.22 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.56 -7.23 -38.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733707937.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.032 kcal (2) G-P(sol) polarization free energy of solvation -31.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds