Wall clock time and date at job start Mon Mar 30 2020 06:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38173 * 120.02920 * 2 1 4 4 C 1.38232 * 120.05823 * 180.02562 * 3 2 1 5 5 C 1.38294 * 120.11124 * 359.97438 * 4 3 2 6 6 C 1.38122 * 120.05499 * 359.97438 * 5 4 3 7 7 C 1.38705 * 120.02828 * 180.25270 * 2 1 3 8 8 O 1.35904 * 120.05924 * 0.02562 * 7 2 1 9 9 C 1.42900 * 117.00131 * 180.25191 * 8 7 2 10 10 C 1.50700 * 109.46759 * 179.97438 * 9 8 7 11 11 O 1.20821 * 120.00212 * 0.02562 * 10 9 8 12 12 O 1.34225 * 119.99623 * 179.97438 * 10 9 8 13 13 C 1.45203 * 116.99920 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47525 * 330.00589 * 13 12 10 15 15 C 1.53005 * 109.47211 * 90.00096 * 13 12 10 16 16 C 1.50701 * 109.47553 * 210.00166 * 13 12 10 17 17 H 1.07999 * 119.99513 * 359.97438 * 16 13 12 18 18 C 1.37872 * 120.00284 * 180.02562 * 16 13 12 19 19 N 1.31514 * 120.00049 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 120.00078 * 180.02562 * 18 16 13 21 21 H 1.48508 * 109.47150 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47048 * 119.99760 * 20 18 16 23 23 H 1.48498 * 109.47446 * 240.00209 * 20 18 16 24 24 H 1.08998 * 109.47168 * 89.99956 * 1 2 3 25 25 H 1.08993 * 109.47031 * 210.00405 * 1 2 3 26 26 H 1.09007 * 109.46737 * 330.00260 * 1 2 3 27 27 H 1.08008 * 119.97043 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.94710 * 179.97438 * 4 3 2 29 29 H 1.07999 * 119.97251 * 180.02562 * 5 4 3 30 30 H 1.08002 * 120.02504 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.46950 * 300.00206 * 9 8 7 32 32 H 1.08994 * 109.46928 * 60.00366 * 9 8 7 33 33 H 1.08994 * 109.47091 * 179.97438 * 15 13 12 34 34 H 1.09001 * 109.46946 * 300.00485 * 15 13 12 35 35 H 1.09004 * 109.46909 * 59.99689 * 15 13 12 36 36 H 0.97000 * 120.00303 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1963 0.0000 4 6 3.5808 1.1970 -0.0005 5 6 4.2752 0.0010 -0.0005 6 6 3.5887 -1.1975 0.0005 7 6 2.2011 -1.2009 -0.0053 8 8 1.5234 -2.3788 -0.0110 9 6 2.3035 -3.5761 -0.0107 10 6 1.3872 -4.7726 -0.0168 11 8 0.1892 -4.6160 -0.0215 12 8 1.9021 -6.0121 -0.0181 13 6 0.9602 -7.1172 -0.0246 14 1 0.0451 -6.8177 0.4863 15 6 0.6349 -7.5015 -1.4695 16 6 1.5679 -8.2996 0.6850 17 1 2.5627 -8.2279 1.0992 18 6 0.8543 -9.4732 0.8046 19 7 -0.3566 -9.5610 0.2990 20 14 1.6074 -10.9386 1.6850 21 1 2.9698 -10.5851 2.1584 22 1 0.7593 -11.3074 2.8468 23 1 1.6920 -12.0884 0.7490 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 1.6584 2.1316 -0.0004 28 1 4.1195 2.1331 -0.0010 29 1 5.3552 0.0042 -0.0005 30 1 4.1315 -2.1312 0.0009 31 1 2.9361 -3.5978 -0.8980 32 1 2.9285 -3.6022 0.8819 33 1 -0.0717 -8.3313 -1.4744 34 1 0.1954 -6.6463 -1.9828 35 1 1.5500 -7.8010 -1.9805 36 1 -0.8588 -10.3866 0.3835 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733707937.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:08 Heat of formation + Delta-G solvation = -123.136336 kcal Electronic energy + Delta-G solvation = -19223.739978 eV Core-core repulsion = 16058.601001 eV Total energy + Delta-G solvation = -3165.138977 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.71290 -40.90713 -38.54843 -37.50538 -35.38842 -33.76787 -32.01084 -31.13349 -29.68708 -27.63367 -27.48275 -24.33146 -22.96926 -22.50925 -21.44467 -19.31917 -18.95788 -18.25947 -17.71549 -17.59563 -16.76575 -16.50478 -16.25619 -16.03857 -15.24666 -14.89639 -14.57883 -14.32055 -14.01460 -14.01139 -13.63333 -13.28098 -13.17766 -13.06188 -12.98052 -12.83949 -12.42740 -12.24236 -12.16067 -12.13300 -11.84768 -11.67154 -11.39424 -11.03474 -10.63340 -9.76231 -9.12393 -8.31220 -6.48791 0.38665 0.47479 1.14756 1.23989 1.43164 1.44054 1.58365 2.33998 2.64864 2.81775 2.99953 3.63689 3.83760 3.94983 3.96797 3.98702 4.22855 4.41586 4.43355 4.48499 4.65451 4.74451 4.76550 4.77621 4.78128 4.99256 5.08303 5.30647 5.41096 5.45265 5.52224 5.57417 5.61248 5.84169 5.87089 5.99998 6.33360 6.56396 6.83978 7.22791 8.76950 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.040749 B = 0.003603 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.966305 B = 7770.347563 C = 8156.023696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.136 4.136 3 C -0.086 4.086 4 C -0.153 4.153 5 C -0.088 4.088 6 C -0.213 4.213 7 C 0.098 3.902 8 O -0.320 6.320 9 C 0.079 3.921 10 C 0.448 3.552 11 O -0.540 6.540 12 O -0.354 6.354 13 C 0.217 3.783 14 H 0.008 0.992 15 C -0.144 4.144 16 C -0.549 4.549 17 H 0.072 0.928 18 C 0.015 3.985 19 N -0.918 5.918 20 Si 0.987 3.013 21 H -0.261 1.261 22 H -0.277 1.277 23 H -0.271 1.271 24 H 0.068 0.932 25 H 0.045 0.955 26 H 0.086 0.914 27 H 0.152 0.848 28 H 0.152 0.848 29 H 0.152 0.848 30 H 0.145 0.855 31 H 0.133 0.867 32 H 0.130 0.870 33 H 0.082 0.918 34 H 0.022 0.978 35 H 0.050 0.950 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.872 19.249 -0.947 21.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.136 4.136 3 C -0.104 4.104 4 C -0.171 4.171 5 C -0.106 4.106 6 C -0.231 4.231 7 C 0.054 3.946 8 O -0.234 6.234 9 C 0.004 3.996 10 C 0.292 3.708 11 O -0.430 6.430 12 O -0.270 6.270 13 C 0.164 3.836 14 H 0.026 0.974 15 C -0.202 4.202 16 C -0.586 4.586 17 H 0.090 0.910 18 C -0.185 4.185 19 N -0.556 5.556 20 Si 0.810 3.190 21 H -0.185 1.185 22 H -0.202 1.202 23 H -0.196 1.196 24 H 0.086 0.914 25 H 0.064 0.936 26 H 0.105 0.895 27 H 0.170 0.830 28 H 0.170 0.830 29 H 0.170 0.830 30 H 0.163 0.837 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.101 0.899 34 H 0.041 0.959 35 H 0.069 0.931 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.143 19.080 -0.978 21.180 hybrid contribution -0.285 -1.113 0.277 1.182 sum 8.858 17.968 -0.702 20.045 Atomic orbital electron populations 1.20612 0.90604 1.02665 1.02383 1.19596 0.97055 0.90877 1.06112 1.21204 0.94848 0.96641 0.97709 1.21465 0.94024 0.99284 1.02352 1.21325 1.01289 0.91276 0.96735 1.21571 0.91972 1.01391 1.08206 1.19220 0.91663 0.84632 0.99115 1.86051 1.35774 1.12237 1.89327 1.22023 0.90949 0.79074 1.07567 1.23756 0.88432 0.86129 0.72490 1.90623 1.18877 1.87192 1.46355 1.86435 1.43485 1.14787 1.82338 1.20450 0.87237 0.80711 0.95169 0.97448 1.22009 1.01472 1.00780 0.95909 1.21333 1.03258 0.96371 1.37646 0.90987 1.25878 0.95126 1.01560 0.95918 1.70028 1.11807 1.28570 1.45167 0.85077 0.78669 0.77371 0.77927 1.18468 1.20223 1.19649 0.91376 0.93555 0.89475 0.83001 0.82993 0.82997 0.83690 0.84950 0.85246 0.89922 0.95855 0.93079 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.50 9.79 71.24 0.70 -1.80 16 2 C -0.14 -3.27 5.89 -19.77 -0.12 -3.39 16 3 C -0.09 -1.53 9.70 22.25 0.22 -1.31 16 4 C -0.15 -2.32 10.04 22.28 0.22 -2.09 16 5 C -0.09 -1.43 10.04 22.26 0.22 -1.21 16 6 C -0.21 -4.41 9.04 22.37 0.20 -4.21 16 7 C 0.10 2.62 6.66 22.51 0.15 2.77 16 8 O -0.32 -10.49 8.72 -73.39 -0.64 -11.13 16 9 C 0.08 2.35 5.33 71.24 0.38 2.73 16 10 C 0.45 19.26 8.01 71.24 0.57 19.84 16 11 O -0.54 -27.69 15.72 28.41 0.45 -27.24 16 12 O -0.35 -16.85 9.86 -51.37 -0.51 -17.36 16 13 C 0.22 12.02 2.56 29.85 0.08 12.10 16 14 H 0.01 0.48 7.16 -2.39 -0.02 0.46 16 15 C -0.14 -7.47 9.33 71.98 0.67 -6.79 16 16 C -0.55 -30.98 8.90 25.60 0.23 -30.75 16 17 H 0.07 3.94 7.81 -2.91 -0.02 3.92 16 18 C 0.01 0.82 5.30 84.65 0.45 1.26 16 19 N -0.92 -52.80 11.32 21.45 0.24 -52.56 16 20 Si 0.99 42.49 29.54 68.60 2.03 44.52 16 21 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 22 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 25 H 0.05 1.34 7.54 -2.39 -0.02 1.33 16 26 H 0.09 1.55 8.09 -2.38 -0.02 1.53 16 27 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 28 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 29 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 30 H 0.15 2.45 6.30 -2.91 -0.02 2.43 16 31 H 0.13 3.03 7.66 -2.39 -0.02 3.02 16 32 H 0.13 3.06 7.66 -2.39 -0.02 3.04 16 33 H 0.08 4.60 6.07 -2.39 -0.01 4.58 16 34 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -70.94 312.25 6.61 -64.32 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 1.08 Total: 12.30 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: 3.97 Total: -12.86 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: 0.24 Total: -52.56 kcal Atomic # 8 Polarization: -55.02 SS G_CDS: -0.70 Total: -55.72 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -70.94 6.61 -64.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733707937.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.815 kcal (2) G-P(sol) polarization free energy of solvation -70.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds