Wall clock time and date at job start Mon Mar 30 2020 06:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94128 * 179.74228 * 4 3 2 6 6 C 1.38283 * 120.05595 * 0.50772 * 5 4 3 7 7 C 1.38246 * 120.11013 * 359.76602 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47121 * 270.02161 * 8 7 6 10 10 O 1.20826 * 119.99779 * 0.02562 * 9 8 7 11 11 O 1.34227 * 119.99932 * 179.97438 * 9 8 7 12 12 C 1.45196 * 116.99797 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.47431 * 330.00352 * 12 11 9 14 14 C 1.53002 * 109.47024 * 90.00373 * 12 11 9 15 15 C 1.50698 * 109.47148 * 210.00064 * 12 11 9 16 16 H 1.08004 * 120.00336 * 0.02562 * 15 12 11 17 17 C 1.37880 * 120.00229 * 180.02562 * 15 12 11 18 18 N 1.31514 * 119.99957 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 120.00121 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47053 * 59.99959 * 19 17 15 21 21 H 1.48499 * 109.47332 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47385 * 299.99695 * 19 17 15 23 23 C 1.38159 * 120.05555 * 359.97438 * 7 6 5 24 24 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 25 25 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 26 26 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 27 27 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 28 28 H 1.08007 * 119.97088 * 180.24901 * 5 4 3 29 29 H 1.08001 * 119.94728 * 179.74503 * 6 5 4 30 30 H 1.09002 * 109.47303 * 30.02167 * 8 7 6 31 31 H 1.09000 * 109.47206 * 150.02292 * 8 7 6 32 32 H 1.08994 * 109.47012 * 299.99706 * 14 12 11 33 33 H 1.08997 * 109.47033 * 59.99736 * 14 12 11 34 34 H 1.08999 * 109.47209 * 179.97438 * 14 12 11 35 35 H 0.97000 * 120.00004 * 180.02562 * 18 17 15 36 36 H 1.08006 * 120.02917 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9208 3.6048 -0.0003 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 0.0000 9 6 6.0622 2.6259 -1.4209 10 8 5.2781 2.5844 -2.3392 11 8 7.3799 2.6975 -1.6662 12 6 7.7909 2.7196 -3.0586 13 1 7.0694 2.1657 -3.6593 14 6 7.8570 4.1678 -3.5480 15 6 9.1499 2.0821 -3.1915 16 1 9.6542 1.6982 -2.3169 17 6 9.7496 1.9887 -4.4295 18 7 9.1354 2.4556 -5.4946 19 14 11.4338 1.1978 -4.5942 20 1 11.3690 -0.2080 -4.1201 21 1 11.8543 1.2205 -6.0183 22 1 12.4170 1.9515 -3.7754 23 6 3.4311 1.2849 0.0001 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2128 2.3203 -0.0106 28 1 1.3339 4.5114 -0.0006 29 1 3.7922 4.6381 0.0002 30 1 5.8757 3.5063 0.5142 31 1 5.9715 1.7289 0.5134 32 1 6.8741 4.6289 -3.4519 33 1 8.5784 4.7216 -2.9473 34 1 8.1659 4.1844 -4.5931 35 1 9.5572 2.3897 -6.3656 36 1 4.0206 0.3800 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733708347.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:57 Heat of formation + Delta-G solvation = -107.189312 kcal Electronic energy + Delta-G solvation = -19289.679769 eV Core-core repulsion = 16125.232307 eV Total energy + Delta-G solvation = -3164.447462 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.26960 -39.38924 -37.56354 -35.62266 -33.24733 -32.57571 -30.54661 -29.62095 -27.80205 -27.12511 -25.29250 -22.67766 -22.30231 -20.93552 -19.52344 -17.78569 -16.89897 -16.55237 -16.33304 -16.02132 -15.81238 -15.22181 -15.08303 -14.44745 -14.11613 -13.74249 -13.24997 -12.99138 -12.54130 -12.38276 -12.16276 -11.86956 -11.67193 -11.52442 -11.17671 -11.11989 -11.01200 -10.87065 -10.79354 -10.36814 -10.26073 -9.63311 -9.49429 -8.89227 -8.80576 -8.46784 -8.18520 -6.16165 -4.23234 1.29024 1.48724 3.05322 3.17534 3.27972 3.31243 3.33719 3.56973 4.03475 4.38047 4.68141 4.74333 4.95313 4.98365 5.02693 5.16595 5.23625 5.29137 5.34243 5.48697 5.65173 5.71346 5.85670 6.05291 6.27618 6.41850 6.61170 6.66717 6.74369 6.91107 6.94396 7.20844 7.36193 7.62352 7.75706 7.97374 8.17020 8.67548 8.91656 9.42169 10.91220 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.033155 B = 0.003863 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.308032 B = 7245.865238 C = 7569.046404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.125 3.875 4 C -0.210 4.210 5 C -0.081 4.081 6 C -0.139 4.139 7 C -0.026 4.026 8 C -0.080 4.080 9 C 0.452 3.548 10 O -0.513 6.513 11 O -0.358 6.358 12 C 0.215 3.785 13 H 0.046 0.954 14 C -0.154 4.154 15 C -0.522 4.522 16 H 0.068 0.932 17 C 0.062 3.938 18 N -0.890 5.890 19 Si 0.912 3.088 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.134 4.134 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.098 0.902 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.016 0.984 33 H 0.036 0.964 34 H 0.099 0.901 35 H 0.266 0.734 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.562 0.060 12.549 19.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.080 3.920 4 C -0.229 4.229 5 C -0.099 4.099 6 C -0.158 4.158 7 C -0.027 4.027 8 C -0.118 4.118 9 C 0.295 3.705 10 O -0.402 6.402 11 O -0.274 6.274 12 C 0.163 3.837 13 H 0.064 0.936 14 C -0.212 4.212 15 C -0.560 4.560 16 H 0.087 0.913 17 C -0.140 4.140 18 N -0.527 5.527 19 Si 0.739 3.261 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.152 4.152 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.116 0.884 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.035 0.965 33 H 0.056 0.944 34 H 0.117 0.883 35 H 0.076 0.924 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.643 -0.125 12.021 18.946 hybrid contribution 0.508 -0.191 -0.396 0.672 sum -14.136 -0.316 11.625 18.304 Atomic orbital electron populations 1.23021 0.78665 1.03747 1.01222 1.86075 1.21161 1.27045 1.88898 1.18912 0.92163 0.84086 0.96868 1.21172 0.99742 0.92476 1.09460 1.20848 0.94419 0.96902 0.97778 1.20930 0.93813 0.97943 1.03074 1.19133 0.93889 0.92644 0.96992 1.20327 0.91573 1.06352 0.93516 1.23110 0.82638 0.73509 0.91292 1.90627 1.57153 1.45658 1.46801 1.86474 1.22848 1.81658 1.36450 1.20617 0.95717 0.94706 0.72648 0.93588 1.22156 0.97566 0.96784 1.04711 1.21005 1.01388 1.39300 0.94297 0.91343 1.24893 0.98534 0.95397 0.95170 1.69893 1.38399 1.45413 0.99028 0.86325 0.82870 0.79801 0.77079 1.19975 1.21051 1.19932 1.20259 0.91429 0.98180 1.05377 0.92816 0.92697 0.88394 0.85719 0.85798 0.85814 0.87046 0.87054 0.96541 0.94447 0.88280 0.92361 0.85142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.11 10.50 -19.44 -0.20 -4.32 16 3 C 0.12 1.74 6.69 -39.22 -0.26 1.47 16 4 C -0.21 -2.54 9.04 -39.43 -0.36 -2.89 16 5 C -0.08 -0.98 10.04 -39.60 -0.40 -1.38 16 6 C -0.14 -1.88 9.70 -39.56 -0.38 -2.27 16 7 C -0.03 -0.39 4.37 -104.65 -0.46 -0.85 16 8 C -0.08 -1.18 5.94 -29.03 -0.17 -1.36 16 9 C 0.45 9.52 7.92 36.01 0.29 9.80 16 10 O -0.51 -12.44 15.25 -18.75 -0.29 -12.73 16 11 O -0.36 -8.59 9.86 -39.25 -0.39 -8.98 16 12 C 0.22 5.89 2.56 -27.88 -0.07 5.82 16 13 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 14 C -0.15 -3.98 9.33 37.16 0.35 -3.64 16 15 C -0.52 -14.85 8.90 -34.44 -0.31 -15.16 16 16 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 17 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 18 N -0.89 -25.60 11.32 55.43 0.63 -24.98 16 19 Si 0.91 21.26 29.54 -169.99 -5.02 16.24 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 C -0.13 -2.00 9.64 -39.44 -0.38 -2.38 16 24 H 0.05 0.36 7.67 -51.93 -0.40 -0.04 16 25 H 0.05 0.42 7.65 -51.93 -0.40 0.02 16 26 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.12 1.16 6.30 -52.49 -0.33 0.83 16 28 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 29 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 30 H 0.11 1.35 8.09 -51.93 -0.42 0.93 16 31 H 0.11 1.41 8.08 -51.93 -0.42 0.99 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.10 2.72 6.07 -51.93 -0.32 2.41 16 35 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.13 1.87 8.06 -52.48 -0.42 1.45 16 LS Contribution 312.76 15.07 4.71 4.71 Total: -1.00 -32.96 312.76 -6.55 -39.51 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -4.73 Total: 0.51 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -1.26 Total: -9.96 kcal Atomic # 7 Polarization: -25.60 SS G_CDS: 0.63 Total: -24.98 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.88 Total: -26.03 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.96 -6.55 -39.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733708347.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.681 kcal (2) G-P(sol) polarization free energy of solvation -32.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds