Wall clock time and date at job start Mon Mar 30 2020 06:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94128 * 179.74228 * 4 3 2 6 6 C 1.38283 * 120.05595 * 0.50772 * 5 4 3 7 7 C 1.38246 * 120.11013 * 359.76602 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47121 * 270.02161 * 8 7 6 10 10 O 1.20826 * 119.99779 * 0.02562 * 9 8 7 11 11 O 1.34227 * 119.99932 * 179.97438 * 9 8 7 12 12 C 1.45196 * 116.99797 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.47431 * 330.00352 * 12 11 9 14 14 C 1.53002 * 109.47024 * 90.00373 * 12 11 9 15 15 C 1.50698 * 109.47148 * 210.00064 * 12 11 9 16 16 H 1.08004 * 120.00336 * 0.02562 * 15 12 11 17 17 C 1.37880 * 120.00229 * 180.02562 * 15 12 11 18 18 N 1.31514 * 119.99957 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 120.00121 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47053 * 59.99959 * 19 17 15 21 21 H 1.48499 * 109.47332 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47385 * 299.99695 * 19 17 15 23 23 C 1.38159 * 120.05555 * 359.97438 * 7 6 5 24 24 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 25 25 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 26 26 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 27 27 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 28 28 H 1.08007 * 119.97088 * 180.24901 * 5 4 3 29 29 H 1.08001 * 119.94728 * 179.74503 * 6 5 4 30 30 H 1.09002 * 109.47303 * 30.02167 * 8 7 6 31 31 H 1.09000 * 109.47206 * 150.02292 * 8 7 6 32 32 H 1.08994 * 109.47012 * 299.99706 * 14 12 11 33 33 H 1.08997 * 109.47033 * 59.99736 * 14 12 11 34 34 H 1.08999 * 109.47209 * 179.97438 * 14 12 11 35 35 H 0.97000 * 120.00004 * 180.02562 * 18 17 15 36 36 H 1.08006 * 120.02917 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9208 3.6048 -0.0003 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 0.0000 9 6 6.0622 2.6259 -1.4209 10 8 5.2781 2.5844 -2.3392 11 8 7.3799 2.6975 -1.6662 12 6 7.7909 2.7196 -3.0586 13 1 7.0694 2.1657 -3.6593 14 6 7.8570 4.1678 -3.5480 15 6 9.1499 2.0821 -3.1915 16 1 9.6542 1.6982 -2.3169 17 6 9.7496 1.9887 -4.4295 18 7 9.1354 2.4556 -5.4946 19 14 11.4338 1.1978 -4.5942 20 1 11.3690 -0.2080 -4.1201 21 1 11.8543 1.2205 -6.0183 22 1 12.4170 1.9515 -3.7754 23 6 3.4311 1.2849 0.0001 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2128 2.3203 -0.0106 28 1 1.3339 4.5114 -0.0006 29 1 3.7922 4.6381 0.0002 30 1 5.8757 3.5063 0.5142 31 1 5.9715 1.7289 0.5134 32 1 6.8741 4.6289 -3.4519 33 1 8.5784 4.7216 -2.9473 34 1 8.1659 4.1844 -4.5931 35 1 9.5572 2.3897 -6.3656 36 1 4.0206 0.3800 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733708347.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:57 Heat of formation + Delta-G solvation = -126.592772 kcal Electronic energy + Delta-G solvation = -19290.521166 eV Core-core repulsion = 16125.232307 eV Total energy + Delta-G solvation = -3165.288859 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.51757 -40.84355 -38.63437 -37.44512 -35.32629 -33.74588 -31.74808 -31.42032 -28.92093 -27.97176 -27.44797 -24.11918 -23.50910 -22.34769 -21.18979 -18.98207 -18.63324 -18.42529 -17.40102 -17.17799 -17.02500 -16.63406 -16.61906 -16.21284 -15.21691 -14.84121 -14.70636 -14.36513 -14.10657 -13.86076 -13.47998 -13.30055 -13.01142 -12.92914 -12.83772 -12.74331 -12.51300 -12.38175 -12.16610 -11.98449 -11.77933 -11.57577 -11.35851 -10.99184 -10.59383 -9.85894 -9.16971 -8.28503 -6.45883 0.25065 0.48060 1.37523 1.42385 1.46297 1.54393 2.05377 2.35996 2.43606 2.87205 3.02142 3.59086 3.85764 4.06646 4.11414 4.21008 4.32027 4.37728 4.39512 4.50721 4.54636 4.60813 4.72125 4.75944 4.78670 4.83749 5.03107 5.18563 5.29704 5.44217 5.48745 5.58547 5.63607 5.79118 5.93212 6.10952 6.45475 6.59996 6.99550 7.26572 8.79020 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.033155 B = 0.003863 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.308032 B = 7245.865238 C = 7569.046404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.340 6.340 3 C 0.111 3.889 4 C -0.207 4.207 5 C -0.081 4.081 6 C -0.152 4.152 7 C -0.045 4.045 8 C -0.067 4.067 9 C 0.447 3.553 10 O -0.550 6.550 11 O -0.363 6.363 12 C 0.217 3.783 13 H 0.004 0.996 14 C -0.141 4.141 15 C -0.551 4.551 16 H 0.069 0.931 17 C 0.015 3.985 18 N -0.918 5.918 19 Si 0.984 3.016 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.160 4.160 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.117 0.883 27 H 0.154 0.846 28 H 0.156 0.844 29 H 0.138 0.862 30 H 0.145 0.855 31 H 0.133 0.867 32 H 0.023 0.977 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.271 0.729 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.955 0.403 13.789 20.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.066 3.934 4 C -0.226 4.226 5 C -0.099 4.099 6 C -0.170 4.170 7 C -0.045 4.045 8 C -0.103 4.103 9 C 0.292 3.708 10 O -0.441 6.441 11 O -0.280 6.280 12 C 0.164 3.836 13 H 0.022 0.978 14 C -0.199 4.199 15 C -0.588 4.588 16 H 0.087 0.913 17 C -0.184 4.184 18 N -0.556 5.556 19 Si 0.807 3.193 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.179 4.179 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.135 0.865 27 H 0.172 0.828 28 H 0.174 0.826 29 H 0.156 0.844 30 H 0.163 0.837 31 H 0.151 0.849 32 H 0.042 0.958 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.058 0.221 13.287 20.083 hybrid contribution 0.455 -0.322 -0.769 0.950 sum -14.603 -0.101 12.518 19.234 Atomic orbital electron populations 1.23349 0.76330 1.05553 1.02347 1.86046 1.23661 1.26917 1.88829 1.19104 0.92127 0.85170 0.96983 1.21544 1.01239 0.91813 1.07984 1.21269 0.94159 0.98171 0.96303 1.21236 0.94772 0.98058 1.02977 1.19208 0.93764 0.93190 0.98385 1.20446 0.91856 1.08939 0.89109 1.24366 0.81116 0.71708 0.93612 1.90604 1.57549 1.47256 1.48694 1.86468 1.25016 1.82254 1.34273 1.20315 0.94501 0.94821 0.73986 0.97825 1.21972 0.98174 0.96198 1.03566 1.21307 1.02083 1.40511 0.94936 0.91281 1.25864 1.02633 0.95470 0.94478 1.70020 1.40125 1.45859 0.99579 0.85214 0.77700 0.78908 0.77473 1.19346 1.20250 1.18653 1.20411 0.92476 0.98215 1.06810 0.91042 0.92068 0.86454 0.82804 0.82635 0.84449 0.83748 0.84880 0.95781 0.93339 0.90195 0.91998 0.85893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.34 -8.59 10.50 -92.48 -0.97 -9.56 16 3 C 0.11 3.03 6.69 22.50 0.15 3.18 16 4 C -0.21 -4.58 9.04 22.37 0.20 -4.38 16 5 C -0.08 -1.76 10.04 22.25 0.22 -1.54 16 6 C -0.15 -3.88 9.70 22.28 0.22 -3.66 16 7 C -0.05 -1.32 4.37 -19.88 -0.09 -1.40 16 8 C -0.07 -1.91 5.94 29.10 0.17 -1.74 16 9 C 0.45 19.04 7.92 71.24 0.56 19.60 16 10 O -0.55 -27.49 15.25 21.97 0.34 -27.16 16 11 O -0.36 -17.71 9.86 -51.38 -0.51 -18.22 16 12 C 0.22 12.22 2.56 29.85 0.08 12.30 16 13 H 0.00 0.25 7.16 -2.39 -0.02 0.23 16 14 C -0.14 -7.42 9.33 71.98 0.67 -6.75 16 15 C -0.55 -31.81 8.90 25.60 0.23 -31.59 16 16 H 0.07 3.87 7.81 -2.91 -0.02 3.85 16 17 C 0.02 0.85 5.30 84.66 0.45 1.30 16 18 N -0.92 -53.61 11.32 21.45 0.24 -53.37 16 19 Si 0.98 43.27 29.54 68.60 2.03 45.30 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 21 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 23 C -0.16 -4.85 9.64 22.36 0.22 -4.63 16 24 H 0.07 0.78 7.67 -2.39 -0.02 0.76 16 25 H 0.06 0.81 7.65 -2.39 -0.02 0.79 16 26 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.15 2.37 6.30 -2.91 -0.02 2.35 16 28 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 29 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 30 H 0.14 3.16 8.09 -2.39 -0.02 3.14 16 31 H 0.13 3.22 8.08 -2.39 -0.02 3.20 16 32 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.08 4.50 6.07 -2.39 -0.01 4.49 16 35 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 36 H 0.12 3.70 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -73.00 312.76 6.40 -66.61 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 1.07 Total: 14.33 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: 4.19 Total: -17.93 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.24 Total: -53.37 kcal Atomic # 8 Polarization: -53.80 SS G_CDS: -1.14 Total: -54.94 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -73.00 6.40 -66.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733708347.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.986 kcal (2) G-P(sol) polarization free energy of solvation -73.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds