Wall clock time and date at job start Mon Mar 30 2020 06:38:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.38266 * 119.94435 * 2 1
4 4 C 1.38144 * 120.05023 * 179.97438 * 3 2 1
5 5 C 1.38730 * 119.94759 * 0.25095 * 4 3 2
6 6 O 1.35900 * 120.05326 * 179.74584 * 5 4 3
7 7 C 1.42904 * 117.00030 * 179.97438 * 6 5 4
8 8 C 1.50698 * 109.47428 * 180.02562 * 7 6 5
9 9 O 1.20834 * 119.99616 * 359.97438 * 8 7 6
10 10 O 1.34224 * 120.00259 * 180.02562 * 8 7 6
11 11 C 1.45195 * 117.00194 * 179.97438 * 10 8 7
12 12 H 1.09001 * 109.47235 * 29.99971 * 11 10 8
13 13 C 1.53003 * 109.47013 * 270.00007 * 11 10 8
14 14 C 1.50699 * 109.47144 * 149.99912 * 11 10 8
15 15 H 1.08001 * 120.00237 * 35.00200 * 14 11 10
16 16 C 1.37879 * 119.99884 * 214.99248 * 14 11 10
17 17 N 1.31517 * 119.99710 * 184.91156 * 16 14 11
18 18 Si 1.86796 * 120.00166 * 4.92250 * 16 14 11
19 19 H 1.48503 * 109.47463 * 84.82748 * 18 16 14
20 20 H 1.48501 * 109.47144 * 204.82786 * 18 16 14
21 21 H 1.48505 * 109.46942 * 324.82548 * 18 16 14
22 22 C 1.38731 * 119.88756 * 359.51433 * 5 4 3
23 23 C 1.38142 * 119.94219 * 0.46271 * 22 5 4
24 24 H 1.09005 * 109.47074 * 90.00121 * 1 2 3
25 25 H 1.09001 * 109.47387 * 210.00064 * 1 2 3
26 26 H 1.09006 * 109.47167 * 330.00363 * 1 2 3
27 27 H 1.07994 * 119.97327 * 359.95204 * 3 2 1
28 28 H 1.08002 * 120.02133 * 179.97438 * 4 3 2
29 29 H 1.09009 * 109.46846 * 300.00152 * 7 6 5
30 30 H 1.08997 * 109.47069 * 59.99837 * 7 6 5
31 31 H 1.09001 * 109.47397 * 295.03083 * 13 11 10
32 32 H 1.09001 * 109.47056 * 55.03645 * 13 11 10
33 33 H 1.09007 * 109.47001 * 175.03298 * 13 11 10
34 34 H 0.97010 * 119.99712 * 180.02562 * 17 16 14
35 35 H 1.07999 * 120.02769 * 180.20515 * 22 5 4
36 36 H 1.08008 * 119.96496 * 179.76691 * 23 22 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1971 1.1981 0.0000
4 6 3.5786 1.2006 0.0005
5 6 4.2734 -0.0001 -0.0042
6 8 5.6323 -0.0001 -0.0089
7 6 6.2811 -1.2734 -0.0130
8 6 7.7751 -1.0760 -0.0173
9 8 8.2369 0.0406 -0.0173
10 8 8.5928 -2.1404 -0.0221
11 6 10.0203 -1.8751 -0.0266
12 1 10.2167 -0.9347 0.4883
13 6 10.5167 -1.7793 -1.4707
14 6 10.7414 -2.9944 0.6793
15 1 10.3779 -4.0080 0.5963
16 6 11.8654 -2.7244 1.4308
17 7 12.5503 -3.7108 1.9671
18 14 12.4152 -0.9578 1.6876
19 1 11.6768 -0.3712 2.8348
20 1 13.8727 -0.9291 1.9703
21 1 12.1331 -0.1685 0.4616
22 6 3.5785 -1.2009 0.0007
23 6 2.1971 -1.1981 0.0007
24 1 -0.3633 0.0000 -1.0277
25 1 -0.3634 -0.8900 0.5138
26 1 -0.3634 0.8901 0.5138
27 1 1.6558 2.1326 -0.0008
28 1 4.1172 2.1368 0.0001
29 1 5.9913 -1.8317 0.8772
30 1 5.9852 -1.8291 -0.9028
31 1 10.4011 -2.7466 -1.9596
32 1 9.9341 -1.0296 -2.0061
33 1 11.5685 -1.4933 -1.4751
34 1 13.3409 -3.5209 2.4962
35 1 4.1171 -2.1370 0.0004
36 1 1.6557 -2.1327 0.0007
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000733711749.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:38:10
Heat of formation + Delta-G solvation = -124.250551 kcal
Electronic energy + Delta-G solvation = -19030.927565 eV
Core-core repulsion = 15865.740272 eV
Total energy + Delta-G solvation = -3165.187293 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 264.119 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-41.72058 -40.89211 -38.75892 -37.57123 -35.23638 -33.10200 -32.67437 -32.00236
-30.00007 -27.50134 -27.01495 -24.30967 -23.30417 -22.17333 -21.46298 -19.63360
-19.36104 -18.25800 -17.86258 -17.70661 -16.72215 -16.29154 -16.20640 -15.89246
-15.23364 -14.88591 -14.63043 -14.46044 -14.43613 -14.39724 -13.82262 -13.65643
-13.09805 -13.07231 -12.95627 -12.86058 -12.63497 -12.41777 -12.01577 -11.88700
-11.82624 -11.56317 -11.39041 -11.23047 -10.91490 -9.96625 -9.04920 -8.50428
-6.60372 0.38113 0.42555 1.10436 1.17031 1.27624 1.28774 1.37517
2.16925 2.55576 2.77920 2.88477 3.59844 3.86065 3.92963 3.98366
4.00815 4.11374 4.18320 4.37425 4.46425 4.54382 4.56807 4.63431
4.83967 4.85466 4.92169 5.11086 5.17859 5.27554 5.33845 5.36574
5.39388 5.53886 5.69140 5.83435 6.09726 6.32092 6.48877 6.78155
7.07133 8.64552
Molecular weight = 264.12amu
Principal moments of inertia in cm(-1)
A = 0.042960 B = 0.003528 C = 0.003451
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 651.612719 B = 7934.016286 C = 8110.696040
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 C -0.129 4.129
3 C -0.084 4.084
4 C -0.163 4.163
5 C 0.098 3.902
6 O -0.323 6.323
7 C 0.076 3.924
8 C 0.450 3.550
9 O -0.539 6.539
10 O -0.351 6.351
11 C 0.182 3.818
12 H 0.037 0.963
13 C -0.148 4.148
14 C -0.531 4.531
15 H 0.053 0.947
16 C 0.038 3.962
17 N -0.919 5.919
18 Si 0.925 3.075
19 H -0.270 1.270
20 H -0.265 1.265
21 H -0.252 1.252
22 C -0.210 4.210
23 C -0.085 4.085
24 H 0.077 0.923
25 H 0.074 0.926
26 H 0.074 0.926
27 H 0.151 0.849
28 H 0.128 0.872
29 H 0.128 0.872
30 H 0.135 0.865
31 H 0.066 0.934
32 H 0.047 0.953
33 H 0.066 0.934
34 H 0.277 0.723
35 H 0.146 0.854
36 H 0.150 0.850
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.259 6.871 -4.828 24.728
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C -0.130 4.130
3 C -0.102 4.102
4 C -0.182 4.182
5 C 0.054 3.946
6 O -0.237 6.237
7 C 0.001 3.999
8 C 0.293 3.707
9 O -0.430 6.430
10 O -0.267 6.267
11 C 0.129 3.871
12 H 0.054 0.946
13 C -0.206 4.206
14 C -0.568 4.568
15 H 0.071 0.929
16 C -0.164 4.164
17 N -0.557 5.557
18 Si 0.748 3.252
19 H -0.196 1.196
20 H -0.189 1.189
21 H -0.176 1.176
22 C -0.229 4.229
23 C -0.103 4.103
24 H 0.095 0.905
25 H 0.093 0.907
26 H 0.093 0.907
27 H 0.169 0.831
28 H 0.146 0.854
29 H 0.146 0.854
30 H 0.153 0.847
31 H 0.085 0.915
32 H 0.066 0.934
33 H 0.085 0.915
34 H 0.087 0.913
35 H 0.164 0.836
36 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges -22.767 7.275 -4.722 24.363
hybrid contribution 1.006 0.422 0.384 1.156
sum -21.761 7.697 -4.338 23.487
Atomic orbital electron populations
1.20773 0.88932 1.03670 1.03022 1.20263 0.97860 0.92746 1.02095
1.21138 0.92028 0.99273 0.97731 1.20659 0.94815 0.96165 1.06546
1.19322 0.80788 0.95784 0.98722 1.86045 1.17996 1.30243 1.89427
1.22065 0.84688 0.85545 1.07651 1.23749 0.91263 0.83303 0.72351
1.90613 1.78714 1.27031 1.46600 1.86591 1.21554 1.36375 1.82218
1.20909 0.73439 0.96692 0.96078 0.94563 1.22156 1.01114 1.01524
0.95767 1.20905 1.10331 0.93935 1.31676 0.92850 1.25624 0.95944
1.01292 0.93519 1.69947 1.18351 1.33633 1.33761 0.86069 0.78631
0.80336 0.80138 1.19554 1.18942 1.17564 1.21555 0.96348 0.96976
1.08006 1.21195 0.92810 0.99074 0.97203 0.90485 0.90675 0.90721
0.83094 0.85428 0.85431 0.84744 0.91482 0.93449 0.91540 0.91322
0.83602 0.83259
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.03 10.01 71.24 0.71 -0.32 16
2 C -0.13 -2.06 5.88 -19.85 -0.12 -2.18 16
3 C -0.08 -1.48 9.69 22.25 0.22 -1.27 16
4 C -0.16 -3.79 9.99 22.37 0.22 -3.57 16
5 C 0.10 2.53 6.69 22.51 0.15 2.68 16
6 O -0.32 -10.14 9.67 -73.35 -0.71 -10.85 16
7 C 0.08 2.14 5.33 71.24 0.38 2.52 16
8 C 0.45 18.03 8.01 71.24 0.57 18.60 16
9 O -0.54 -25.32 15.72 28.37 0.45 -24.87 16
10 O -0.35 -15.79 9.86 -51.36 -0.51 -16.30 16
11 C 0.18 9.09 2.22 29.85 0.07 9.16 16
12 H 0.04 1.90 4.31 -2.39 -0.01 1.89 16
13 C -0.15 -6.41 9.53 71.98 0.69 -5.72 16
14 C -0.53 -30.42 9.25 25.60 0.24 -30.18 16
15 H 0.05 3.33 8.06 -2.91 -0.02 3.31 16
16 C 0.04 2.16 5.47 84.65 0.46 2.62 16
17 N -0.92 -55.05 13.96 21.45 0.30 -54.75 16
18 Si 0.93 44.04 26.99 68.60 1.85 45.89 16
19 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16
20 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16
21 H -0.25 -11.56 6.82 99.48 0.68 -10.88 16
22 C -0.21 -4.29 9.04 22.36 0.20 -4.09 16
23 C -0.08 -1.42 9.69 22.25 0.22 -1.20 16
24 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16
25 H 0.07 0.59 8.08 -2.39 -0.02 0.57 16
26 H 0.07 0.59 8.08 -2.38 -0.02 0.57 16
27 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16
28 H 0.13 2.92 8.06 -2.91 -0.02 2.90 16
29 H 0.13 2.94 7.65 -2.38 -0.02 2.93 16
30 H 0.14 2.87 7.67 -2.39 -0.02 2.85 16
31 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16
32 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16
33 H 0.07 2.81 8.14 -2.38 -0.02 2.79 16
34 H 0.28 15.32 8.31 -92.70 -0.77 14.55 16
35 H 0.15 2.42 6.30 -2.91 -0.02 2.40 16
36 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16
Total: -1.00 -70.97 313.24 6.43 -64.53
By element:
Atomic # 1 Polarization: 8.24 SS G_CDS: 1.05 Total: 9.28 kcal
Atomic # 6 Polarization: -16.95 SS G_CDS: 4.01 Total: -12.94 kcal
Atomic # 7 Polarization: -55.05 SS G_CDS: 0.30 Total: -54.75 kcal
Atomic # 8 Polarization: -51.24 SS G_CDS: -0.77 Total: -52.01 kcal
Atomic # 14 Polarization: 44.04 SS G_CDS: 1.85 Total: 45.89 kcal
Total: -70.97 6.43 -64.53 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000733711749.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -59.718 kcal
(2) G-P(sol) polarization free energy of solvation -70.966 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.684 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.433 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.532 kcal
(6) G-S(sol) free energy of system = (1) + (5) -124.251 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds