Wall clock time and date at job start Mon Mar 30 2020 06:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35642 * 116.99845 * 2 1 4 4 C 1.38712 * 120.15444 * 359.97438 * 3 2 1 5 5 C 1.38053 * 120.09113 * 180.02562 * 4 3 2 6 6 C 1.50697 * 119.79900 * 179.97438 * 5 4 3 7 7 C 1.38559 * 120.40203 * 0.02562 * 5 4 3 8 8 C 1.37767 * 120.30897 * 359.69357 * 7 5 4 9 9 C 1.39770 * 119.90160 * 0.58160 * 8 7 5 10 10 C 1.47396 * 120.19798 * 179.72111 * 9 8 7 11 11 O 1.21515 * 119.99929 * 179.71843 * 10 9 8 12 12 O 1.34744 * 120.00355 * 359.72361 * 10 9 8 13 13 C 1.45206 * 117.00670 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.46590 * 29.99992 * 13 12 10 15 15 C 1.52997 * 109.47226 * 270.00216 * 13 12 10 16 16 C 1.50697 * 109.47178 * 149.99698 * 13 12 10 17 17 H 1.07999 * 120.00055 * 0.02562 * 16 13 12 18 18 C 1.37878 * 119.99687 * 180.02562 * 16 13 12 19 19 N 1.31511 * 120.00458 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 119.99926 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.47262 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46882 * 119.99668 * 20 18 16 23 23 H 1.48493 * 109.47394 * 239.99732 * 20 18 16 24 24 H 1.09004 * 109.47098 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47170 * 299.99571 * 1 2 3 26 26 H 1.09001 * 109.47426 * 59.99892 * 1 2 3 27 27 H 1.08000 * 119.95265 * 0.02562 * 4 3 2 28 28 H 1.08997 * 109.47125 * 90.00422 * 6 5 4 29 29 H 1.09001 * 109.47094 * 210.00155 * 6 5 4 30 30 H 1.09000 * 109.47198 * 330.00088 * 6 5 4 31 31 H 1.08002 * 119.84744 * 179.97438 * 7 5 4 32 32 H 1.07998 * 120.05258 * 180.30050 * 8 7 5 33 33 H 1.09002 * 109.47153 * 299.99431 * 15 13 12 34 34 H 1.09001 * 109.46832 * 179.97438 * 15 13 12 35 35 H 1.09004 * 109.47261 * 59.99603 * 15 13 12 36 36 H 0.96999 * 120.00480 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 6 1.2924 2.3739 -0.0005 5 6 1.9204 3.6033 -0.0011 6 6 1.0966 4.8652 -0.0022 7 6 3.3037 3.6841 -0.0016 8 6 4.0671 2.5372 0.0047 9 6 3.4446 1.2858 -0.0005 10 6 4.2550 0.0547 0.0000 11 8 3.7100 -1.0314 0.0006 12 8 5.6001 0.1334 0.0000 13 6 6.3340 -1.1195 0.0011 14 1 5.7496 -1.8832 -0.5121 15 6 6.5917 -1.5584 1.4440 16 6 7.6496 -0.9318 -0.7095 17 1 7.9085 0.0328 -1.1205 18 6 8.5227 -1.9915 -0.8349 19 7 8.2076 -3.1660 -0.3341 20 14 10.1538 -1.7587 -1.7151 21 1 10.2684 -0.3535 -2.1816 22 1 11.2679 -2.0620 -0.7813 23 1 10.2221 -2.6751 -2.8815 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.2137 2.3194 -0.0005 28 1 0.8976 5.1701 1.0251 29 1 1.6434 5.6556 -0.5164 30 1 0.1530 4.6826 -0.5163 31 1 3.7857 4.6505 -0.0024 32 1 5.1449 2.6050 0.0092 33 1 7.1761 -0.7947 1.9572 34 1 7.1422 -2.4992 1.4447 35 1 5.6400 -1.6942 1.9579 36 1 8.8217 -3.9116 -0.4226 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781475255.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:15 Heat of formation + Delta-G solvation = -106.128823 kcal Electronic energy + Delta-G solvation = -19714.761179 eV Core-core repulsion = 16550.359703 eV Total energy + Delta-G solvation = -3164.401476 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.39605 -38.83127 -37.55328 -35.44688 -33.25388 -32.74797 -30.16460 -29.52525 -28.03118 -26.96003 -25.24916 -22.95151 -22.22053 -21.18565 -19.70226 -17.81688 -16.93092 -16.62227 -15.99392 -15.78885 -15.44761 -14.67543 -14.60039 -14.29781 -14.01850 -13.80830 -13.76509 -12.87495 -12.47116 -12.36258 -12.17894 -11.95222 -11.74249 -11.43770 -11.16842 -11.11071 -11.01569 -10.93232 -10.75507 -10.28244 -10.22634 -9.47375 -9.40639 -8.85857 -8.80899 -8.43429 -8.17191 -6.12620 -4.19014 0.93467 1.44170 3.15877 3.27293 3.29447 3.33681 3.38771 3.75196 4.03729 4.38332 4.59642 4.78978 4.95274 5.05502 5.10341 5.16799 5.20411 5.36901 5.44402 5.46367 5.52415 5.66665 5.74962 5.99638 6.28580 6.32927 6.48890 6.73884 6.76284 6.97999 7.01012 7.25796 7.42794 7.66974 7.81404 8.03018 8.22166 8.75460 8.99642 9.46258 10.95002 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.028261 B = 0.004762 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.543620 B = 5878.565565 C = 6565.630867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.280 6.280 3 C 0.186 3.814 4 C -0.229 4.229 5 C -0.024 4.024 6 C -0.117 4.117 7 C -0.176 4.176 8 C -0.020 4.020 9 C -0.155 4.155 10 C 0.495 3.505 11 O -0.502 6.502 12 O -0.355 6.355 13 C 0.216 3.784 14 H 0.047 0.953 15 C -0.154 4.154 16 C -0.518 4.518 17 H 0.069 0.931 18 C 0.062 3.938 19 N -0.889 5.889 20 Si 0.911 3.089 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.101 0.899 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.132 0.868 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.129 0.871 32 H 0.148 0.852 33 H 0.036 0.964 34 H 0.098 0.902 35 H 0.016 0.984 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.503 13.485 1.318 19.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.190 6.190 3 C 0.139 3.861 4 C -0.248 4.248 5 C -0.025 4.025 6 C -0.174 4.174 7 C -0.194 4.194 8 C -0.038 4.038 9 C -0.157 4.157 10 C 0.339 3.661 11 O -0.392 6.392 12 O -0.272 6.272 13 C 0.164 3.836 14 H 0.064 0.936 15 C -0.212 4.212 16 C -0.556 4.556 17 H 0.087 0.913 18 C -0.140 4.140 19 N -0.527 5.527 20 Si 0.738 3.262 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.120 0.880 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.150 0.850 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.147 0.853 32 H 0.166 0.834 33 H 0.055 0.945 34 H 0.117 0.883 35 H 0.035 0.965 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.464 12.730 1.336 19.314 hybrid contribution 0.568 -0.033 -0.378 0.683 sum -13.895 12.698 0.958 18.848 Atomic orbital electron populations 1.23136 0.79034 1.04207 1.00936 1.86418 1.20549 1.25449 1.86627 1.19053 0.90793 0.84853 0.91440 1.20981 0.99883 0.91362 1.12542 1.19869 0.94101 0.94462 0.94030 1.20861 0.99318 0.94594 1.02605 1.20907 0.92876 0.98656 1.06948 1.21443 1.01188 0.90049 0.91090 1.18835 0.89683 0.93346 1.13795 1.20689 0.83040 0.88254 0.74148 1.90805 1.73304 1.29531 1.45531 1.86516 1.16862 1.41519 1.82330 1.20612 0.89926 0.78440 0.94662 0.93564 1.22153 0.98845 1.03526 0.96660 1.21072 1.00695 0.97616 1.36222 0.91272 1.24887 0.98780 0.94724 0.95637 1.69915 1.36829 1.01083 1.44917 0.86233 0.82412 0.78413 0.79145 1.19485 1.20763 1.20796 0.88039 0.92753 0.92736 0.84979 0.90709 0.91041 0.91456 0.85290 0.83435 0.94491 0.88315 0.96511 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 101.05 0.99 1.23 16 2 O -0.28 -4.79 8.57 -40.51 -0.35 -5.14 16 3 C 0.19 3.07 6.70 -38.67 -0.26 2.81 16 4 C -0.23 -2.85 8.67 -39.47 -0.34 -3.20 16 5 C -0.02 -0.27 5.88 -104.57 -0.62 -0.89 16 6 C -0.12 -0.87 10.00 36.00 0.36 -0.51 16 7 C -0.18 -2.14 9.67 -39.64 -0.38 -2.53 16 8 C -0.02 -0.30 9.61 -39.18 -0.38 -0.68 16 9 C -0.15 -2.90 5.88 -104.86 -0.62 -3.51 16 10 C 0.49 11.65 7.86 34.46 0.27 11.92 16 11 O -0.50 -13.13 14.42 -26.60 -0.38 -13.51 16 12 O -0.36 -8.97 9.11 -40.61 -0.37 -9.34 16 13 C 0.22 6.06 2.56 -27.89 -0.07 5.99 16 14 H 0.05 1.43 7.16 -51.93 -0.37 1.06 16 15 C -0.15 -4.08 9.33 37.16 0.35 -3.74 16 16 C -0.52 -14.93 8.90 -34.44 -0.31 -15.23 16 17 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 19 N -0.89 -25.86 11.32 55.43 0.63 -25.23 16 20 Si 0.91 21.44 29.54 -169.99 -5.02 16.42 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 26 H 0.05 0.48 7.66 -51.93 -0.40 0.09 16 27 H 0.13 1.26 6.30 -52.49 -0.33 0.93 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 32 H 0.15 2.24 7.61 -52.49 -0.40 1.84 16 33 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.10 2.76 6.07 -51.93 -0.32 2.45 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 309.84 15.07 4.67 4.67 Total: -1.00 -33.53 309.84 -6.63 -40.16 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -4.71 Total: -1.34 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -1.10 Total: -6.69 kcal Atomic # 7 Polarization: -25.86 SS G_CDS: 0.63 Total: -25.23 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -1.10 Total: -27.99 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.53 -6.63 -40.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781475255.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.967 kcal (2) G-P(sol) polarization free energy of solvation -33.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds