Wall clock time and date at job start Mon Mar 30 2020 06:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35642 * 116.99845 * 2 1 4 4 C 1.38712 * 120.15444 * 359.97438 * 3 2 1 5 5 C 1.38053 * 120.09113 * 180.02562 * 4 3 2 6 6 C 1.50697 * 119.79900 * 179.97438 * 5 4 3 7 7 C 1.38559 * 120.40203 * 0.02562 * 5 4 3 8 8 C 1.37767 * 120.30897 * 359.69357 * 7 5 4 9 9 C 1.39770 * 119.90160 * 0.58160 * 8 7 5 10 10 C 1.47396 * 120.19798 * 179.72111 * 9 8 7 11 11 O 1.21515 * 119.99929 * 179.71843 * 10 9 8 12 12 O 1.34744 * 120.00355 * 359.72361 * 10 9 8 13 13 C 1.45206 * 117.00670 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.46590 * 29.99992 * 13 12 10 15 15 C 1.52997 * 109.47226 * 270.00216 * 13 12 10 16 16 C 1.50697 * 109.47178 * 149.99698 * 13 12 10 17 17 H 1.07999 * 120.00055 * 0.02562 * 16 13 12 18 18 C 1.37878 * 119.99687 * 180.02562 * 16 13 12 19 19 N 1.31511 * 120.00458 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 119.99926 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.47262 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46882 * 119.99668 * 20 18 16 23 23 H 1.48493 * 109.47394 * 239.99732 * 20 18 16 24 24 H 1.09004 * 109.47098 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47170 * 299.99571 * 1 2 3 26 26 H 1.09001 * 109.47426 * 59.99892 * 1 2 3 27 27 H 1.08000 * 119.95265 * 0.02562 * 4 3 2 28 28 H 1.08997 * 109.47125 * 90.00422 * 6 5 4 29 29 H 1.09001 * 109.47094 * 210.00155 * 6 5 4 30 30 H 1.09000 * 109.47198 * 330.00088 * 6 5 4 31 31 H 1.08002 * 119.84744 * 179.97438 * 7 5 4 32 32 H 1.07998 * 120.05258 * 180.30050 * 8 7 5 33 33 H 1.09002 * 109.47153 * 299.99431 * 15 13 12 34 34 H 1.09001 * 109.46832 * 179.97438 * 15 13 12 35 35 H 1.09004 * 109.47261 * 59.99603 * 15 13 12 36 36 H 0.96999 * 120.00480 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 6 1.2924 2.3739 -0.0005 5 6 1.9204 3.6033 -0.0011 6 6 1.0966 4.8652 -0.0022 7 6 3.3037 3.6841 -0.0016 8 6 4.0671 2.5372 0.0047 9 6 3.4446 1.2858 -0.0005 10 6 4.2550 0.0547 0.0000 11 8 3.7100 -1.0314 0.0006 12 8 5.6001 0.1334 0.0000 13 6 6.3340 -1.1195 0.0011 14 1 5.7496 -1.8832 -0.5121 15 6 6.5917 -1.5584 1.4440 16 6 7.6496 -0.9318 -0.7095 17 1 7.9085 0.0328 -1.1205 18 6 8.5227 -1.9915 -0.8349 19 7 8.2076 -3.1660 -0.3341 20 14 10.1538 -1.7587 -1.7151 21 1 10.2684 -0.3535 -2.1816 22 1 11.2679 -2.0620 -0.7813 23 1 10.2221 -2.6751 -2.8815 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.2137 2.3194 -0.0005 28 1 0.8976 5.1701 1.0251 29 1 1.6434 5.6556 -0.5164 30 1 0.1530 4.6826 -0.5163 31 1 3.7857 4.6505 -0.0024 32 1 5.1449 2.6050 0.0092 33 1 7.1761 -0.7947 1.9572 34 1 7.1422 -2.4992 1.4447 35 1 5.6400 -1.6942 1.9579 36 1 8.8217 -3.9116 -0.4226 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781475255.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:14 Heat of formation + Delta-G solvation = -126.202344 kcal Electronic energy + Delta-G solvation = -19715.631632 eV Core-core repulsion = 16550.359703 eV Total energy + Delta-G solvation = -3165.271929 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.71115 -40.53211 -38.62876 -37.43350 -35.33284 -33.89527 -31.65385 -31.21499 -28.92426 -28.00865 -27.46412 -24.46211 -23.33951 -22.71753 -21.45057 -19.34295 -18.56805 -18.28080 -17.56837 -17.07354 -16.94207 -16.43316 -16.38187 -15.44178 -15.29842 -14.75122 -14.67893 -14.50680 -14.21361 -13.88908 -13.28863 -13.10999 -13.06294 -12.98729 -12.94861 -12.81737 -12.42898 -12.37664 -12.15790 -12.12469 -11.89250 -11.58009 -11.26117 -10.98108 -10.61297 -9.92769 -9.29282 -8.29166 -6.46607 -0.27904 0.37414 1.41254 1.43013 1.56850 1.64959 2.00520 2.28466 2.42350 2.73211 3.01289 3.67049 3.80184 3.97460 4.10456 4.28505 4.29115 4.35737 4.47562 4.53210 4.66981 4.73105 4.76415 4.80878 4.83129 4.90504 5.05555 5.19726 5.26761 5.29680 5.47025 5.51497 5.60238 5.77458 5.89792 6.06711 6.37727 6.59634 7.00182 7.25764 8.79424 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.028261 B = 0.004762 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.543620 B = 5878.565565 C = 6565.630867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.324 6.324 3 C 0.175 3.825 4 C -0.223 4.223 5 C -0.006 4.006 6 C -0.116 4.116 7 C -0.169 4.169 8 C -0.027 4.027 9 C -0.202 4.202 10 C 0.487 3.513 11 O -0.543 6.543 12 O -0.359 6.359 13 C 0.217 3.783 14 H 0.003 0.997 15 C -0.140 4.140 16 C -0.547 4.547 17 H 0.069 0.931 18 C 0.015 3.985 19 N -0.919 5.919 20 Si 0.988 3.012 21 H -0.262 1.262 22 H -0.269 1.269 23 H -0.275 1.275 24 H 0.108 0.892 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.167 0.833 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.164 0.836 32 H 0.140 0.860 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.018 0.982 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.474 16.685 1.012 22.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.236 6.236 3 C 0.128 3.872 4 C -0.241 4.241 5 C -0.006 4.006 6 C -0.172 4.172 7 C -0.186 4.186 8 C -0.045 4.045 9 C -0.204 4.204 10 C 0.334 3.666 11 O -0.435 6.435 12 O -0.276 6.276 13 C 0.164 3.836 14 H 0.020 0.980 15 C -0.198 4.198 16 C -0.584 4.584 17 H 0.087 0.913 18 C -0.185 4.185 19 N -0.557 5.557 20 Si 0.810 3.190 21 H -0.186 1.186 22 H -0.195 1.195 23 H -0.201 1.201 24 H 0.126 0.874 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.185 0.815 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.182 0.818 32 H 0.158 0.842 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.037 0.963 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.461 15.951 1.040 22.239 hybrid contribution 0.681 -0.954 -0.270 1.203 sum -14.779 14.997 0.770 21.070 Atomic orbital electron populations 1.23479 0.76124 1.05529 1.03069 1.86354 1.23807 1.26668 1.86740 1.19300 0.90195 0.86084 0.91649 1.21361 1.01356 0.90189 1.11182 1.20453 0.94118 0.95783 0.90277 1.20996 0.99498 0.92530 1.04202 1.21288 0.93448 0.98643 1.05265 1.21475 1.01246 0.90133 0.91694 1.18785 0.90524 0.92010 1.19044 1.21693 0.82289 0.89912 0.72673 1.90756 1.73488 1.31492 1.47798 1.86506 1.18384 1.39837 1.82916 1.20355 0.89641 0.78680 0.94914 0.97967 1.21969 0.98773 1.02934 0.96076 1.21318 1.01357 0.98175 1.37594 0.91302 1.25896 1.02648 0.94004 0.95926 1.70038 1.38342 1.01942 1.45350 0.85070 0.77180 0.78770 0.77962 1.18573 1.19453 1.20082 0.87406 0.90439 0.90525 0.81519 0.88884 0.89386 0.89703 0.81834 0.84245 0.93358 0.89882 0.96335 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.81 113.37 1.11 1.35 16 2 O -0.32 -11.38 8.57 -68.64 -0.59 -11.97 16 3 C 0.18 5.78 6.70 22.86 0.15 5.94 16 4 C -0.22 -4.90 8.67 22.34 0.19 -4.71 16 5 C -0.01 -0.11 5.88 -19.83 -0.12 -0.23 16 6 C -0.12 -1.06 10.00 71.23 0.71 -0.35 16 7 C -0.17 -3.63 9.67 22.23 0.21 -3.41 16 8 C -0.03 -0.84 9.61 22.53 0.22 -0.63 16 9 C -0.20 -7.86 5.88 -20.02 -0.12 -7.98 16 10 C 0.49 24.61 7.86 70.23 0.55 25.16 16 11 O -0.54 -30.73 14.42 26.79 0.39 -30.34 16 12 O -0.36 -19.35 9.11 -56.55 -0.52 -19.87 16 13 C 0.22 12.95 2.56 29.85 0.08 13.03 16 14 H 0.00 0.17 7.16 -2.39 -0.02 0.15 16 15 C -0.14 -7.78 9.33 71.98 0.67 -7.11 16 16 C -0.55 -32.65 8.90 25.60 0.23 -32.42 16 17 H 0.07 4.00 7.81 -2.91 -0.02 3.98 16 18 C 0.01 0.84 5.30 84.66 0.45 1.29 16 19 N -0.92 -54.81 11.32 21.45 0.24 -54.57 16 20 Si 0.99 44.14 29.54 68.60 2.03 46.16 16 21 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 23 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 24 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 25 H 0.08 1.18 7.66 -2.39 -0.02 1.16 16 26 H 0.08 1.18 7.66 -2.39 -0.02 1.17 16 27 H 0.17 2.43 6.30 -2.91 -0.02 2.41 16 28 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.09 0.60 8.08 -2.39 -0.02 0.58 16 30 H 0.08 0.56 8.08 -2.39 -0.02 0.54 16 31 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 32 H 0.14 4.39 7.61 -2.91 -0.02 4.36 16 33 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.08 4.87 6.07 -2.39 -0.01 4.85 16 35 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.27 14.99 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -78.43 309.84 6.98 -71.45 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 1.08 Total: 9.19 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 4.35 Total: -10.06 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.24 Total: -54.57 kcal Atomic # 8 Polarization: -61.46 SS G_CDS: -0.72 Total: -62.17 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -78.43 6.98 -71.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781475255.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.750 kcal (2) G-P(sol) polarization free energy of solvation -78.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds