Wall clock time and date at job start Mon Mar 30 2020 06:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99463 * 2 1 4 4 H 1.48503 * 109.47216 * 270.00007 * 3 2 1 5 5 H 1.48502 * 109.47233 * 30.00270 * 3 2 1 6 6 H 1.48504 * 109.47153 * 150.00134 * 3 2 1 7 7 C 1.37878 * 120.00516 * 179.97438 * 2 1 3 8 8 C 1.51263 * 120.84626 * 359.97438 * 7 2 1 9 9 C 1.53230 * 108.53392 * 128.62977 * 8 7 2 10 10 C 1.52966 * 109.40252 * 54.62955 * 9 8 7 11 11 H 1.08988 * 109.41597 * 56.43719 * 10 9 8 12 12 C 1.53006 * 109.41095 * 176.29493 * 10 9 8 13 13 O 1.45203 * 109.46581 * 184.99493 * 12 10 9 14 14 C 1.34905 * 116.99350 * 179.97438 * 13 12 10 15 15 O 1.21613 * 120.00243 * 0.02562 * 14 13 12 16 16 C 1.46472 * 119.99680 * 180.02562 * 14 13 12 17 17 C 1.36639 * 125.99485 * 179.71695 * 16 14 13 18 18 C 1.40313 * 106.69911 * 179.90800 * 17 16 14 19 19 C 1.35168 * 107.12957 * 0.35032 * 18 17 16 20 20 O 1.33912 * 108.77976 * 359.78006 * 19 18 17 21 21 C 1.52957 * 109.81597 * 296.39743 * 10 9 8 22 22 C 1.51269 * 120.84930 * 179.97438 * 7 2 1 23 23 H 0.97003 * 120.00426 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.62963 * 8.91729 * 8 7 2 25 25 H 1.08998 * 109.78179 * 248.43570 * 8 7 2 26 26 H 1.08990 * 109.48609 * 294.64803 * 9 8 7 27 27 H 1.09003 * 109.49275 * 174.60599 * 9 8 7 28 28 H 1.08992 * 109.47046 * 304.99531 * 12 10 9 29 29 H 1.08997 * 109.47395 * 65.00071 * 12 10 9 30 30 H 1.07998 * 126.64807 * 359.97438 * 17 16 14 31 31 H 1.08005 * 126.43427 * 180.13426 * 18 17 16 32 32 H 1.07995 * 125.61062 * 179.74508 * 19 18 17 33 33 H 1.09001 * 109.48345 * 183.58073 * 21 10 9 34 34 H 1.09005 * 109.48462 * 303.62388 * 21 10 9 35 35 H 1.09000 * 109.62565 * 351.08700 * 22 7 2 36 36 H 1.09007 * 109.62449 * 111.46472 * 22 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4463 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 6 1.2678 -2.5151 0.0017 9 6 1.8223 -3.3830 -1.1329 10 6 3.3395 -3.5073 -0.9827 11 1 3.5742 -3.9109 0.0021 12 6 3.8817 -4.4483 -2.0604 13 8 5.3023 -4.6605 -1.8473 14 6 5.9374 -5.4724 -2.7175 15 8 5.3201 -5.9882 -3.6296 16 6 7.3706 -5.7328 -2.5638 17 6 8.1318 -6.5346 -3.3667 18 6 9.4383 -6.4919 -2.8569 19 6 9.4170 -5.6827 -1.7744 20 8 8.1697 -5.2273 -1.6011 21 6 3.9900 -2.1313 -1.1350 22 6 3.5171 -1.2163 0.0000 23 1 -0.4851 0.8400 0.0004 24 1 0.2036 -2.3410 -0.1571 25 1 1.4178 -3.0202 0.9559 26 1 1.5886 -2.9206 -2.0918 27 1 1.3702 -4.3738 -1.0871 28 1 3.3594 -5.4033 -2.0052 29 1 3.7242 -4.0042 -3.0433 30 1 7.7935 -7.0922 -4.2275 31 1 10.2987 -7.0110 -3.2529 32 1 10.2661 -5.4433 -1.1514 33 1 5.0742 -2.2349 -1.0906 34 1 3.7049 -1.6985 -2.0939 35 1 3.8981 -0.2076 -0.1599 36 1 3.8780 -1.5967 0.9556 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809087744.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:00 Heat of formation + Delta-G solvation = -89.236183 kcal Electronic energy + Delta-G solvation = -19536.546355 eV Core-core repulsion = 16372.877399 eV Total energy + Delta-G solvation = -3163.668956 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.93608 -40.14155 -37.41095 -36.02126 -33.38049 -32.61121 -30.56963 -29.79137 -29.07640 -25.53808 -23.73823 -22.08262 -21.58389 -21.09144 -20.58806 -19.23507 -18.53170 -17.08747 -16.82223 -16.15247 -16.11774 -15.65303 -14.42124 -14.05166 -13.57478 -13.45997 -13.29211 -13.07421 -12.97295 -12.76229 -12.54252 -12.00259 -11.76899 -11.24445 -10.96055 -10.82999 -10.78050 -10.48380 -10.38276 -10.30965 -9.95327 -9.80539 -9.43834 -9.05201 -8.83537 -8.56334 -8.43894 -6.07479 -3.97515 0.68376 2.01535 2.25520 2.79289 2.97026 3.29079 3.37618 3.39840 4.41107 4.47786 4.56021 4.77640 5.15599 5.26459 5.33435 5.38117 5.42808 5.54761 5.67837 5.95222 5.98805 6.04144 6.29489 6.47456 6.55200 6.59095 6.72056 6.79888 6.95204 7.05170 7.13712 7.19874 7.46828 7.67680 7.69482 7.76914 7.86141 8.42658 9.00170 9.57940 11.02324 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.032732 B = 0.004175 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.231528 B = 6704.427790 C = 7279.421933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.074 3.926 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.487 4.487 8 C 0.011 3.989 9 C -0.101 4.101 10 C -0.072 4.072 11 H 0.071 0.929 12 C 0.071 3.929 13 O -0.339 6.339 14 C 0.547 3.453 15 O -0.493 6.493 16 C -0.058 4.058 17 C -0.113 4.113 18 C -0.230 4.230 19 C 0.003 3.997 20 O -0.147 6.147 21 C -0.103 4.103 22 C -0.016 4.016 23 H 0.264 0.736 24 H 0.058 0.942 25 H 0.004 0.996 26 H 0.053 0.947 27 H 0.033 0.967 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.164 0.836 31 H 0.160 0.840 32 H 0.213 0.787 33 H 0.039 0.961 34 H 0.050 0.950 35 H 0.028 0.972 36 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.574 -11.136 -4.499 20.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.128 4.128 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.192 1.192 7 C -0.506 4.506 8 C -0.026 4.026 9 C -0.139 4.139 10 C -0.091 4.091 11 H 0.090 0.910 12 C -0.002 4.002 13 O -0.254 6.254 14 C 0.391 3.609 15 O -0.383 6.383 16 C -0.108 4.108 17 C -0.133 4.133 18 C -0.249 4.249 19 C -0.067 4.067 20 O -0.041 6.041 21 C -0.141 4.141 22 C -0.053 4.053 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.023 0.977 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.181 0.819 31 H 0.177 0.823 32 H 0.230 0.770 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.047 0.953 36 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 16.041 -10.937 -4.522 19.934 hybrid contribution 0.531 0.741 -0.293 0.957 sum 16.572 -10.196 -4.815 20.044 Atomic orbital electron populations 1.69833 1.06157 1.26871 1.50131 1.24848 0.94708 0.98568 0.94662 0.86665 0.79965 0.83337 0.78424 1.20455 1.21697 1.19196 1.20065 0.89455 0.91461 1.49632 1.19356 0.98593 0.92893 0.91756 1.21638 0.91754 0.98384 1.02147 1.21140 0.96740 0.94640 0.96573 0.91044 1.23629 0.74627 1.00429 1.01499 1.86690 1.27046 1.60271 1.51422 1.19216 0.84762 0.76803 0.80111 1.90930 1.65673 1.49388 1.32288 1.20941 0.89980 1.05207 0.94705 1.22004 0.92520 0.98481 1.00293 1.21866 0.98407 1.05362 0.99305 1.24577 0.85643 0.97147 0.99350 1.84211 1.18463 1.56916 1.44477 1.21603 0.97010 0.94794 1.00647 1.19756 0.96588 0.95068 0.93914 0.92647 0.92321 0.97726 0.92819 0.94841 0.91407 0.91095 0.81882 0.82276 0.77019 0.94255 0.93139 0.95327 0.96440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 12.73 55.43 0.71 -25.12 16 2 C 0.07 2.05 5.46 -17.82 -0.10 1.95 16 3 Si 0.89 21.34 27.27 -169.99 -4.64 16.70 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.24 6.46 56.52 0.37 -5.87 16 7 C -0.49 -12.91 5.51 -98.93 -0.55 -13.46 16 8 C 0.01 0.28 5.97 -27.49 -0.16 0.12 16 9 C -0.10 -2.12 5.22 -26.63 -0.14 -2.26 16 10 C -0.07 -1.40 2.33 -90.66 -0.21 -1.62 16 11 H 0.07 1.40 8.14 -51.94 -0.42 0.98 16 12 C 0.07 1.22 4.85 37.16 0.18 1.40 16 13 O -0.34 -5.79 9.69 -42.50 -0.41 -6.20 16 14 C 0.55 8.69 7.93 34.05 0.27 8.96 16 15 O -0.49 -8.50 16.66 -19.35 -0.32 -8.82 16 16 C -0.06 -0.78 7.18 -36.84 -0.26 -1.04 16 17 C -0.11 -1.20 10.62 -39.38 -0.42 -1.62 16 18 C -0.23 -1.85 10.87 -39.89 -0.43 -2.28 16 19 C 0.00 0.03 12.08 29.64 0.36 0.39 16 20 O -0.15 -1.82 10.67 4.73 0.05 -1.77 16 21 C -0.10 -2.14 5.15 -26.62 -0.14 -2.28 16 22 C -0.02 -0.37 5.59 -27.47 -0.15 -0.53 16 23 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 24 H 0.06 1.59 7.07 -51.93 -0.37 1.23 16 25 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 26 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.16 0.79 8.06 -52.48 -0.42 0.37 16 32 H 0.21 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.04 0.76 7.71 -51.93 -0.40 0.36 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.03 0.67 4.78 -51.93 -0.25 0.42 16 36 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 LS Contribution 303.64 15.07 4.58 4.58 Total: -1.00 -30.59 303.64 -6.63 -37.22 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: -4.84 Total: -4.31 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -1.76 Total: -12.27 kcal Atomic # 7 Polarization: -25.83 SS G_CDS: 0.71 Total: -25.12 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.68 Total: -16.79 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.64 Total: 16.70 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.59 -6.63 -37.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809087744.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.018 kcal (2) G-P(sol) polarization free energy of solvation -30.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds