Wall clock time and date at job start Mon Mar 30 2020 06:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99463 * 2 1 4 4 H 1.48503 * 109.47216 * 270.00007 * 3 2 1 5 5 H 1.48502 * 109.47233 * 30.00270 * 3 2 1 6 6 H 1.48504 * 109.47153 * 150.00134 * 3 2 1 7 7 C 1.37878 * 120.00516 * 179.97438 * 2 1 3 8 8 C 1.51263 * 120.84626 * 359.97438 * 7 2 1 9 9 C 1.53230 * 108.53392 * 128.62977 * 8 7 2 10 10 C 1.52966 * 109.40252 * 54.62955 * 9 8 7 11 11 H 1.08988 * 109.41597 * 56.43719 * 10 9 8 12 12 C 1.53006 * 109.41095 * 176.29493 * 10 9 8 13 13 O 1.45203 * 109.46581 * 184.99493 * 12 10 9 14 14 C 1.34905 * 116.99350 * 179.97438 * 13 12 10 15 15 O 1.21613 * 120.00243 * 0.02562 * 14 13 12 16 16 C 1.46472 * 119.99680 * 180.02562 * 14 13 12 17 17 C 1.36639 * 125.99485 * 179.71695 * 16 14 13 18 18 C 1.40313 * 106.69911 * 179.90800 * 17 16 14 19 19 C 1.35168 * 107.12957 * 0.35032 * 18 17 16 20 20 O 1.33912 * 108.77976 * 359.78006 * 19 18 17 21 21 C 1.52957 * 109.81597 * 296.39743 * 10 9 8 22 22 C 1.51269 * 120.84930 * 179.97438 * 7 2 1 23 23 H 0.97003 * 120.00426 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.62963 * 8.91729 * 8 7 2 25 25 H 1.08998 * 109.78179 * 248.43570 * 8 7 2 26 26 H 1.08990 * 109.48609 * 294.64803 * 9 8 7 27 27 H 1.09003 * 109.49275 * 174.60599 * 9 8 7 28 28 H 1.08992 * 109.47046 * 304.99531 * 12 10 9 29 29 H 1.08997 * 109.47395 * 65.00071 * 12 10 9 30 30 H 1.07998 * 126.64807 * 359.97438 * 17 16 14 31 31 H 1.08005 * 126.43427 * 180.13426 * 18 17 16 32 32 H 1.07995 * 125.61062 * 179.74508 * 19 18 17 33 33 H 1.09001 * 109.48345 * 183.58073 * 21 10 9 34 34 H 1.09005 * 109.48462 * 303.62388 * 21 10 9 35 35 H 1.09000 * 109.62565 * 351.08700 * 22 7 2 36 36 H 1.09007 * 109.62449 * 111.46472 * 22 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4463 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 6 1.2678 -2.5151 0.0017 9 6 1.8223 -3.3830 -1.1329 10 6 3.3395 -3.5073 -0.9827 11 1 3.5742 -3.9109 0.0021 12 6 3.8817 -4.4483 -2.0604 13 8 5.3023 -4.6605 -1.8473 14 6 5.9374 -5.4724 -2.7175 15 8 5.3201 -5.9882 -3.6296 16 6 7.3706 -5.7328 -2.5638 17 6 8.1318 -6.5346 -3.3667 18 6 9.4383 -6.4919 -2.8569 19 6 9.4170 -5.6827 -1.7744 20 8 8.1697 -5.2273 -1.6011 21 6 3.9900 -2.1313 -1.1350 22 6 3.5171 -1.2163 0.0000 23 1 -0.4851 0.8400 0.0004 24 1 0.2036 -2.3410 -0.1571 25 1 1.4178 -3.0202 0.9559 26 1 1.5886 -2.9206 -2.0918 27 1 1.3702 -4.3738 -1.0871 28 1 3.3594 -5.4033 -2.0052 29 1 3.7242 -4.0042 -3.0433 30 1 7.7935 -7.0922 -4.2275 31 1 10.2987 -7.0110 -3.2529 32 1 10.2661 -5.4433 -1.1514 33 1 5.0742 -2.2349 -1.0906 34 1 3.7049 -1.6985 -2.0939 35 1 3.8981 -0.2076 -0.1599 36 1 3.8780 -1.5967 0.9556 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809087744.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:00 Heat of formation + Delta-G solvation = -106.347800 kcal Electronic energy + Delta-G solvation = -19537.288371 eV Core-core repulsion = 16372.877399 eV Total energy + Delta-G solvation = -3164.410971 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.71737 -41.37302 -39.01050 -37.44410 -34.54736 -34.13651 -31.80288 -31.40587 -30.69952 -27.05247 -24.94351 -23.35487 -22.91934 -22.74004 -21.61629 -20.89127 -19.56393 -18.29453 -18.04541 -17.77515 -17.03631 -16.79033 -16.37246 -15.48565 -15.17489 -14.67032 -14.55203 -14.39081 -14.17967 -13.99156 -13.80024 -13.61725 -13.44510 -12.92740 -12.66222 -12.63108 -12.44262 -12.02688 -11.86455 -11.74175 -11.46587 -11.29423 -11.11261 -10.71428 -10.53114 -10.45457 -9.81588 -8.16178 -6.09584 -0.23507 1.27370 1.31054 1.38259 1.41137 1.50159 1.78903 2.04926 2.41638 3.10759 3.61469 3.85455 3.87566 3.92806 4.02248 4.16275 4.42928 4.45752 4.53032 4.69915 4.76386 4.85845 4.88321 4.99939 5.04716 5.11098 5.20383 5.27955 5.34144 5.35836 5.44849 5.60741 5.66303 5.78921 5.82110 5.88900 6.38095 6.51301 6.97098 7.48293 8.94946 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.032732 B = 0.004175 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.231528 B = 6704.427790 C = 7279.421933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.019 3.981 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.254 1.254 7 C -0.499 4.499 8 C 0.006 3.994 9 C -0.093 4.093 10 C -0.065 4.065 11 H 0.071 0.929 12 C 0.079 3.921 13 O -0.349 6.349 14 C 0.546 3.454 15 O -0.518 6.518 16 C -0.106 4.106 17 C -0.099 4.099 18 C -0.232 4.232 19 C 0.022 3.978 20 O -0.171 6.171 21 C -0.098 4.098 22 C -0.018 4.018 23 H 0.262 0.738 24 H 0.027 0.973 25 H 0.001 0.999 26 H 0.044 0.956 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.172 0.828 31 H 0.195 0.805 32 H 0.258 0.742 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.029 0.971 36 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.923 -12.048 -4.860 23.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.178 4.178 3 Si 0.767 3.233 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.178 1.178 7 C -0.518 4.518 8 C -0.031 4.031 9 C -0.131 4.131 10 C -0.084 4.084 11 H 0.089 0.911 12 C 0.006 3.994 13 O -0.265 6.265 14 C 0.393 3.607 15 O -0.410 6.410 16 C -0.156 4.156 17 C -0.119 4.119 18 C -0.250 4.250 19 C -0.048 4.048 20 O -0.066 6.066 21 C -0.135 4.135 22 C -0.056 4.056 23 H 0.071 0.929 24 H 0.046 0.954 25 H 0.020 0.980 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.189 0.811 31 H 0.212 0.788 32 H 0.274 0.726 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.048 0.952 36 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 19.413 -11.859 -4.883 23.267 hybrid contribution -0.379 0.925 -0.141 1.009 sum 19.035 -10.935 -5.025 22.519 Atomic orbital electron populations 1.69969 1.07651 1.27409 1.52312 1.25620 0.95369 1.01825 0.95029 0.85808 0.79240 0.79674 0.78606 1.19987 1.21853 1.17836 1.20690 0.91268 0.91935 1.47919 1.19333 0.96976 0.93584 0.93201 1.21453 0.93153 0.98681 0.99779 1.20959 0.95410 0.94527 0.97479 0.91087 1.23360 0.75357 1.00376 1.00325 1.86661 1.26666 1.61035 1.52168 1.19584 0.85809 0.75936 0.79379 1.90899 1.66554 1.50403 1.33133 1.20699 0.89233 1.08496 0.97160 1.22369 0.93454 0.96584 0.99500 1.22296 0.98175 1.05474 0.99069 1.25626 0.84975 0.95009 0.99156 1.84188 1.19971 1.57774 1.44668 1.21516 0.98079 0.94859 0.99079 1.19783 0.94664 0.95963 0.95167 0.92864 0.95437 0.98013 0.93670 0.92419 0.90199 0.91055 0.81055 0.78832 0.72591 0.92563 0.93636 0.95229 0.96184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.61 12.73 21.45 0.27 -55.33 16 2 C 0.02 1.08 5.46 84.66 0.46 1.54 16 3 Si 0.94 43.92 27.27 68.60 1.87 45.80 16 4 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.25 -11.21 6.46 99.48 0.64 -10.57 16 7 C -0.50 -26.64 5.51 -16.17 -0.09 -26.73 16 8 C 0.01 0.33 5.97 30.10 0.18 0.51 16 9 C -0.09 -3.85 5.22 30.66 0.16 -3.69 16 10 C -0.07 -2.46 2.33 -10.82 -0.03 -2.48 16 11 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 12 C 0.08 2.61 4.85 71.98 0.35 2.96 16 13 O -0.35 -11.64 9.69 -56.82 -0.55 -12.19 16 14 C 0.55 17.09 7.93 69.97 0.55 17.65 16 15 O -0.52 -17.75 16.66 19.47 0.32 -17.42 16 16 C -0.11 -2.72 7.18 24.04 0.17 -2.55 16 17 C -0.10 -1.89 10.62 22.40 0.24 -1.65 16 18 C -0.23 -2.80 10.87 22.07 0.24 -2.56 16 19 C 0.02 0.27 12.08 67.11 0.81 1.08 16 20 O -0.17 -3.89 10.67 -4.91 -0.05 -3.94 16 21 C -0.10 -3.94 5.15 30.67 0.16 -3.78 16 22 C -0.02 -0.85 5.59 30.12 0.17 -0.68 16 23 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 24 H 0.03 1.53 7.07 -2.39 -0.02 1.52 16 25 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 26 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.06 2.09 8.14 -2.39 -0.02 2.08 16 28 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 31 H 0.19 0.93 8.06 -2.91 -0.02 0.90 16 32 H 0.26 0.45 8.06 -2.91 -0.02 0.43 16 33 H 0.06 2.08 7.71 -2.39 -0.02 2.06 16 34 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.03 1.34 4.78 -2.39 -0.01 1.33 16 36 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 Total: -1.00 -67.62 303.64 6.26 -61.36 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: 1.01 Total: 2.12 kcal Atomic # 6 Polarization: -23.77 SS G_CDS: 3.38 Total: -20.39 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.27 Total: -55.33 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -0.28 Total: -33.55 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.87 Total: 45.80 kcal Total: -67.62 6.26 -61.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809087744.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.988 kcal (2) G-P(sol) polarization free energy of solvation -67.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds