Wall clock time and date at job start Mon Mar 30 2020 06:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.34513 * 125.78544 * 2 1 4 4 C 1.41386 * 106.83640 * 180.02562 * 3 2 1 5 5 C 1.34506 * 106.84198 * 359.97438 * 4 3 2 6 6 C 1.50701 * 125.79074 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.46930 * 95.08519 * 6 5 4 8 8 O 1.20827 * 120.00008 * 5.14494 * 7 6 5 9 9 O 1.34233 * 120.00097 * 185.14609 * 7 6 5 10 10 C 1.45199 * 117.00209 * 182.71918 * 9 7 6 11 11 C 1.50708 * 112.84462 * 294.75369 * 10 9 7 12 12 H 1.08003 * 119.99755 * 108.26229 * 11 10 9 13 13 C 1.37876 * 119.99784 * 288.26104 * 11 10 9 14 14 N 1.31512 * 119.99640 * 183.16060 * 13 11 10 15 15 Si 1.86796 * 120.00213 * 3.15247 * 13 11 10 16 16 H 1.48497 * 109.47237 * 267.92384 * 15 13 11 17 17 H 1.48502 * 109.47090 * 27.92769 * 15 13 11 18 18 H 1.48506 * 109.47012 * 147.92462 * 15 13 11 19 19 C 1.53778 * 113.69532 * 66.02004 * 10 9 7 20 20 C 1.53776 * 87.07964 * 89.12773 * 19 10 9 21 21 C 1.53778 * 87.08264 * 25.43437 * 20 19 10 22 22 O 1.34302 * 108.42359 * 0.27156 * 5 4 3 23 23 H 1.09004 * 109.46763 * 90.00793 * 1 2 3 24 24 H 1.09002 * 109.46962 * 210.00135 * 1 2 3 25 25 H 1.08996 * 109.47011 * 330.00719 * 1 2 3 26 26 H 1.07999 * 126.57953 * 0.04727 * 3 2 1 27 27 H 1.08006 * 126.57797 * 179.97438 * 4 3 2 28 28 H 1.08995 * 109.47283 * 335.08468 * 6 5 4 29 29 H 1.09006 * 109.47480 * 215.08431 * 6 5 4 30 30 H 0.97006 * 120.00205 * 180.02562 * 14 13 11 31 31 H 1.08999 * 113.61848 * 203.68238 * 19 10 9 32 32 H 1.09001 * 113.61341 * 334.58319 * 19 10 9 33 33 H 1.09003 * 113.61986 * 270.88619 * 20 19 10 34 34 H 1.09004 * 113.69197 * 139.99422 * 20 19 10 35 35 H 1.09003 * 113.61938 * 220.01757 * 21 20 19 36 36 H 1.09004 * 113.69195 * 89.12079 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6309 0.6321 -0.0006 5 6 3.5814 -0.7121 -0.0004 6 6 4.7706 -1.6378 -0.0003 7 6 5.0897 -2.0454 1.4150 8 8 4.3660 -1.7033 2.3200 9 8 6.1780 -2.7886 1.6702 10 6 6.3903 -3.1953 3.0479 11 6 6.6582 -2.0312 3.9669 12 1 5.9079 -1.7220 4.6794 13 6 7.8613 -1.3612 3.8979 14 7 8.1198 -0.3857 4.7412 15 14 9.1239 -1.8391 2.6069 16 1 10.0531 -2.8494 3.1734 17 1 8.4309 -2.4116 1.4248 18 1 9.8914 -0.6360 2.1960 19 6 5.3209 -4.1650 3.5778 20 6 6.2060 -5.3059 3.0488 21 6 7.3981 -4.3465 3.2020 22 8 2.2925 -1.0894 -0.0057 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5137 26 1 1.9665 2.1204 0.0007 27 1 4.5213 1.2434 -0.0012 28 1 5.6298 -1.1256 -0.4333 29 1 4.5408 -2.5247 -0.5908 30 1 8.9661 0.0860 4.6925 31 1 5.2226 -4.1559 4.6633 32 1 4.3630 -4.0816 3.0643 33 1 5.9952 -5.5787 2.0148 34 1 6.2518 -6.1688 3.7133 35 1 8.1172 -4.4096 2.3853 36 1 7.8688 -4.3861 4.1844 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810854322.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:11 Heat of formation + Delta-G solvation = -43.555436 kcal Electronic energy + Delta-G solvation = -20304.318318 eV Core-core repulsion = 17142.630228 eV Total energy + Delta-G solvation = -3161.688090 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.38140 -39.68683 -37.32747 -34.37942 -32.98631 -32.79319 -32.38714 -29.90645 -27.00190 -25.13352 -24.98245 -22.47055 -21.61113 -20.86957 -19.78344 -18.38238 -17.34790 -16.43981 -16.30808 -15.49965 -15.28959 -15.11809 -14.58846 -14.26821 -13.98028 -13.27470 -13.04118 -12.88272 -12.68665 -12.60288 -12.50647 -12.10966 -11.81778 -11.60628 -11.51452 -11.29318 -10.99062 -10.38842 -10.26236 -10.04886 -9.92360 -9.66174 -9.51968 -8.85595 -8.71286 -8.53570 -8.08225 -6.18146 -4.24079 1.85254 2.76908 3.01298 3.22961 3.25653 3.36290 3.48082 3.80017 4.38603 4.70152 5.00997 5.14789 5.22738 5.24764 5.37593 5.40285 5.42114 5.48455 5.60812 5.63082 5.68082 5.82887 6.00235 6.13732 6.17691 6.25356 6.34340 6.54468 6.60487 6.73171 6.74145 6.96087 7.21413 7.37076 7.45667 7.79163 8.41064 8.86583 8.97018 9.43721 10.92661 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.023814 B = 0.006266 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.504624 B = 4467.807653 C = 4963.048301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.018 4.018 3 C -0.210 4.210 4 C -0.194 4.194 5 C 0.008 3.992 6 C -0.040 4.040 7 C 0.457 3.543 8 O -0.483 6.483 9 O -0.358 6.358 10 C 0.192 3.808 11 C -0.511 4.511 12 H 0.083 0.917 13 C 0.082 3.918 14 N -0.883 5.883 15 Si 0.865 3.135 16 H -0.276 1.276 17 H -0.238 1.238 18 H -0.292 1.292 19 C -0.138 4.138 20 C -0.144 4.144 21 C -0.127 4.127 22 O -0.169 6.169 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.146 0.854 27 H 0.148 0.852 28 H 0.126 0.874 29 H 0.113 0.887 30 H 0.266 0.734 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.676 -2.578 -11.555 14.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.068 4.068 3 C -0.229 4.229 4 C -0.213 4.213 5 C -0.042 4.042 6 C -0.078 4.078 7 C 0.297 3.703 8 O -0.369 6.369 9 O -0.276 6.276 10 C 0.158 3.842 11 C -0.548 4.548 12 H 0.101 0.899 13 C -0.123 4.123 14 N -0.520 5.520 15 Si 0.691 3.309 16 H -0.202 1.202 17 H -0.161 1.161 18 H -0.218 1.218 19 C -0.176 4.176 20 C -0.182 4.182 21 C -0.165 4.165 22 O -0.066 6.066 23 H 0.096 0.904 24 H 0.094 0.906 25 H 0.105 0.895 26 H 0.163 0.837 27 H 0.166 0.834 28 H 0.144 0.856 29 H 0.131 0.869 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.851 -2.666 -11.176 14.504 hybrid contribution 0.910 0.276 -0.422 1.040 sum -7.941 -2.389 -11.599 14.258 Atomic orbital electron populations 1.20256 0.85368 1.03994 1.03033 1.22343 0.93857 0.84269 1.06378 1.21493 0.92667 0.99193 1.09525 1.21540 0.98350 0.93718 1.07696 1.21498 0.82502 0.93908 1.06253 1.19786 0.93469 0.99594 0.94909 1.22669 0.79954 0.77282 0.90355 1.90650 1.48806 1.50905 1.46555 1.86488 1.41982 1.63228 1.35933 1.21166 0.93143 0.93145 0.76731 1.21062 1.01805 1.14084 1.17807 0.89882 1.25061 0.98151 0.94070 0.94982 1.69929 1.24212 1.21906 1.35917 0.87104 0.81457 0.78147 0.84162 1.20236 1.16127 1.21832 1.23248 0.97340 0.95579 1.01401 1.22906 0.98032 0.96822 1.00397 1.23173 0.96272 0.95048 1.01987 1.83908 1.16230 1.35028 1.71457 0.90449 0.90642 0.89511 0.83666 0.83430 0.85633 0.86927 0.92412 0.89423 0.92562 0.91001 0.92204 0.92288 0.88498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.42 36.01 0.38 -0.31 16 2 C -0.02 -0.27 7.32 -35.62 -0.26 -0.53 16 3 C -0.21 -3.11 10.81 -39.70 -0.43 -3.53 16 4 C -0.19 -3.20 10.81 -39.70 -0.43 -3.63 16 5 C 0.01 0.15 5.82 -35.63 -0.21 -0.06 16 6 C -0.04 -0.65 6.35 -29.04 -0.18 -0.83 16 7 C 0.46 10.04 7.33 36.00 0.26 10.30 16 8 O -0.48 -12.38 14.14 -18.75 -0.27 -12.65 16 9 O -0.36 -8.25 8.16 -39.27 -0.32 -8.57 16 10 C 0.19 4.62 0.10 -90.96 -0.01 4.61 16 11 C -0.51 -14.64 8.01 -34.44 -0.28 -14.92 16 12 H 0.08 2.68 8.06 -52.48 -0.42 2.26 16 13 C 0.08 2.37 5.46 -17.82 -0.10 2.27 16 14 N -0.88 -26.99 13.96 55.43 0.77 -26.22 16 15 Si 0.86 21.21 24.83 -169.99 -4.22 16.99 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 17 H -0.24 -5.56 5.67 56.52 0.32 -5.24 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 C -0.14 -2.95 6.89 -25.92 -0.18 -3.13 16 20 C -0.14 -2.60 8.03 -25.92 -0.21 -2.81 16 21 C -0.13 -2.67 5.38 -25.92 -0.14 -2.81 16 22 O -0.17 -2.93 10.65 5.71 0.06 -2.87 16 23 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 27 H 0.15 2.23 8.06 -52.48 -0.42 1.80 16 28 H 0.13 1.73 8.14 -51.93 -0.42 1.31 16 29 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.09 1.87 8.09 -51.93 -0.42 1.45 16 32 H 0.06 1.20 7.31 -51.93 -0.38 0.82 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 1.19 6.68 -51.93 -0.35 0.85 16 36 H 0.10 2.04 8.09 -51.93 -0.42 1.62 16 LS Contribution 304.02 15.07 4.58 4.58 Total: -1.00 -34.31 304.02 -6.18 -40.49 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.01 Total: 3.63 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -1.78 Total: -15.38 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.77 Total: -26.22 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.52 Total: -24.09 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.22 Total: 16.99 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.31 -6.18 -40.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810854322.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.066 kcal (2) G-P(sol) polarization free energy of solvation -34.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds