Wall clock time and date at job start Mon Mar 30 2020 06:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.34513 * 125.78544 * 2 1 4 4 C 1.41386 * 106.83640 * 180.02562 * 3 2 1 5 5 C 1.34506 * 106.84198 * 359.97438 * 4 3 2 6 6 C 1.50701 * 125.79074 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.46930 * 95.08519 * 6 5 4 8 8 O 1.20827 * 120.00008 * 5.14494 * 7 6 5 9 9 O 1.34233 * 120.00097 * 185.14609 * 7 6 5 10 10 C 1.45199 * 117.00209 * 182.71918 * 9 7 6 11 11 C 1.50708 * 112.84462 * 294.75369 * 10 9 7 12 12 H 1.08003 * 119.99755 * 108.26229 * 11 10 9 13 13 C 1.37876 * 119.99784 * 288.26104 * 11 10 9 14 14 N 1.31512 * 119.99640 * 183.16060 * 13 11 10 15 15 Si 1.86796 * 120.00213 * 3.15247 * 13 11 10 16 16 H 1.48497 * 109.47237 * 267.92384 * 15 13 11 17 17 H 1.48502 * 109.47090 * 27.92769 * 15 13 11 18 18 H 1.48506 * 109.47012 * 147.92462 * 15 13 11 19 19 C 1.53778 * 113.69532 * 66.02004 * 10 9 7 20 20 C 1.53776 * 87.07964 * 89.12773 * 19 10 9 21 21 C 1.53778 * 87.08264 * 25.43437 * 20 19 10 22 22 O 1.34302 * 108.42359 * 0.27156 * 5 4 3 23 23 H 1.09004 * 109.46763 * 90.00793 * 1 2 3 24 24 H 1.09002 * 109.46962 * 210.00135 * 1 2 3 25 25 H 1.08996 * 109.47011 * 330.00719 * 1 2 3 26 26 H 1.07999 * 126.57953 * 0.04727 * 3 2 1 27 27 H 1.08006 * 126.57797 * 179.97438 * 4 3 2 28 28 H 1.08995 * 109.47283 * 335.08468 * 6 5 4 29 29 H 1.09006 * 109.47480 * 215.08431 * 6 5 4 30 30 H 0.97006 * 120.00205 * 180.02562 * 14 13 11 31 31 H 1.08999 * 113.61848 * 203.68238 * 19 10 9 32 32 H 1.09001 * 113.61341 * 334.58319 * 19 10 9 33 33 H 1.09003 * 113.61986 * 270.88619 * 20 19 10 34 34 H 1.09004 * 113.69197 * 139.99422 * 20 19 10 35 35 H 1.09003 * 113.61938 * 220.01757 * 21 20 19 36 36 H 1.09004 * 113.69195 * 89.12079 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6309 0.6321 -0.0006 5 6 3.5814 -0.7121 -0.0004 6 6 4.7706 -1.6378 -0.0003 7 6 5.0897 -2.0454 1.4150 8 8 4.3660 -1.7033 2.3200 9 8 6.1780 -2.7886 1.6702 10 6 6.3903 -3.1953 3.0479 11 6 6.6582 -2.0312 3.9669 12 1 5.9079 -1.7220 4.6794 13 6 7.8613 -1.3612 3.8979 14 7 8.1198 -0.3857 4.7412 15 14 9.1239 -1.8391 2.6069 16 1 10.0531 -2.8494 3.1734 17 1 8.4309 -2.4116 1.4248 18 1 9.8914 -0.6360 2.1960 19 6 5.3209 -4.1650 3.5778 20 6 6.2060 -5.3059 3.0488 21 6 7.3981 -4.3465 3.2020 22 8 2.2925 -1.0894 -0.0057 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5137 26 1 1.9665 2.1204 0.0007 27 1 4.5213 1.2434 -0.0012 28 1 5.6298 -1.1256 -0.4333 29 1 4.5408 -2.5247 -0.5908 30 1 8.9661 0.0860 4.6925 31 1 5.2226 -4.1559 4.6633 32 1 4.3630 -4.0816 3.0643 33 1 5.9952 -5.5787 2.0148 34 1 6.2518 -6.1688 3.7133 35 1 8.1172 -4.4096 2.3853 36 1 7.8688 -4.3861 4.1844 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810854322.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:10 Heat of formation + Delta-G solvation = -65.423553 kcal Electronic energy + Delta-G solvation = -20305.266591 eV Core-core repulsion = 17142.630228 eV Total energy + Delta-G solvation = -3162.636363 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.58460 -41.46397 -39.06252 -36.17021 -34.58456 -34.20784 -33.96081 -31.03799 -28.99602 -26.68313 -26.36146 -24.24323 -22.88763 -22.36901 -21.04804 -20.17507 -19.30239 -17.93942 -17.69259 -17.24643 -16.91914 -16.70589 -16.35099 -15.78085 -15.28408 -14.87771 -14.52232 -14.34104 -13.80132 -13.78868 -13.72754 -13.60516 -13.33982 -13.29527 -13.03877 -12.87401 -12.55668 -12.16589 -11.99861 -11.92910 -11.67555 -11.32954 -10.91947 -10.85675 -10.66080 -10.44356 -9.26789 -8.39253 -6.51917 0.61450 1.32382 1.33829 1.52948 1.54757 1.58332 1.89264 2.20952 2.33653 3.02847 3.52392 3.75458 3.81011 3.94668 4.03989 4.08551 4.12733 4.23222 4.38516 4.48388 4.57095 4.71423 4.79775 4.82323 4.87959 4.90808 5.01124 5.03841 5.05984 5.23154 5.28283 5.50528 5.54902 5.61518 5.88290 6.17352 6.30241 6.58099 7.12012 7.21724 8.76429 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.023814 B = 0.006266 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.504624 B = 4467.807653 C = 4963.048301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.022 4.022 3 C -0.227 4.227 4 C -0.208 4.208 5 C -0.021 4.021 6 C -0.029 4.029 7 C 0.449 3.551 8 O -0.531 6.531 9 O -0.353 6.353 10 C 0.174 3.826 11 C -0.520 4.520 12 H 0.020 0.980 13 C 0.024 3.976 14 N -0.938 5.938 15 Si 0.931 3.069 16 H -0.256 1.256 17 H -0.214 1.214 18 H -0.294 1.294 19 C -0.144 4.144 20 C -0.114 4.114 21 C -0.127 4.127 22 O -0.188 6.188 23 H 0.103 0.897 24 H 0.076 0.924 25 H 0.106 0.894 26 H 0.171 0.829 27 H 0.154 0.846 28 H 0.154 0.846 29 H 0.150 0.850 30 H 0.269 0.731 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.524 -4.255 -14.391 17.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.245 4.245 4 C -0.227 4.227 5 C -0.071 4.071 6 C -0.065 4.065 7 C 0.292 3.708 8 O -0.420 6.420 9 O -0.271 6.271 10 C 0.140 3.860 11 C -0.557 4.557 12 H 0.038 0.962 13 C -0.175 4.175 14 N -0.577 5.577 15 Si 0.753 3.247 16 H -0.180 1.180 17 H -0.136 1.136 18 H -0.221 1.221 19 C -0.182 4.182 20 C -0.151 4.151 21 C -0.164 4.164 22 O -0.086 6.086 23 H 0.121 0.879 24 H 0.095 0.905 25 H 0.124 0.876 26 H 0.188 0.812 27 H 0.172 0.828 28 H 0.171 0.829 29 H 0.168 0.832 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.711 -4.364 -14.026 17.078 hybrid contribution 0.675 0.911 0.536 1.254 sum -8.036 -3.454 -13.490 16.078 Atomic orbital electron populations 1.20500 0.82050 1.05019 1.05017 1.23313 0.95792 0.83631 1.04419 1.21874 0.92060 1.00673 1.09929 1.21900 0.99597 0.93992 1.07213 1.21731 0.82962 0.94430 1.07970 1.19904 0.94241 1.01355 0.91033 1.23857 0.78742 0.75854 0.92366 1.90640 1.50145 1.52520 1.48704 1.86441 1.42663 1.63534 1.34438 1.21255 0.96119 0.92144 0.76519 1.21130 1.00495 1.15983 1.18073 0.96211 1.26026 1.00492 0.93718 0.97273 1.70089 1.25232 1.23891 1.38483 0.86069 0.78623 0.78281 0.81731 1.18016 1.13638 1.22069 1.23233 0.97134 0.97143 1.00656 1.22807 0.94012 0.96084 1.02224 1.23168 0.96979 0.93927 1.02345 1.83898 1.16537 1.36300 1.71846 0.87850 0.90483 0.87569 0.81192 0.82791 0.82857 0.83244 0.92224 0.90816 0.93264 0.88690 0.88968 0.90565 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 10.42 71.24 0.74 -0.47 16 2 C -0.02 -0.61 7.32 24.84 0.18 -0.43 16 3 C -0.23 -6.48 10.81 22.19 0.24 -6.24 16 4 C -0.21 -6.78 10.81 22.19 0.24 -6.54 16 5 C -0.02 -0.73 5.82 24.83 0.14 -0.58 16 6 C -0.03 -0.87 6.35 29.10 0.18 -0.69 16 7 C 0.45 19.50 7.33 71.24 0.52 20.02 16 8 O -0.53 -28.14 14.14 21.96 0.31 -27.82 16 9 O -0.35 -15.70 8.16 -51.44 -0.42 -16.12 16 10 C 0.17 8.33 0.10 -11.01 0.00 8.33 16 11 C -0.52 -31.10 8.01 25.60 0.21 -30.89 16 12 H 0.02 1.38 8.06 -2.91 -0.02 1.35 16 13 C 0.02 1.44 5.46 84.65 0.46 1.90 16 14 N -0.94 -59.89 13.96 21.45 0.30 -59.59 16 15 Si 0.93 43.27 24.83 68.60 1.70 44.98 16 16 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 17 H -0.21 -9.05 5.67 99.48 0.56 -8.49 16 18 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 19 C -0.14 -6.12 6.89 31.12 0.21 -5.90 16 20 C -0.11 -3.72 8.03 31.12 0.25 -3.47 16 21 C -0.13 -4.98 5.38 31.12 0.17 -4.82 16 22 O -0.19 -6.38 10.65 -2.47 -0.03 -6.41 16 23 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 24 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.17 3.79 8.06 -2.91 -0.02 3.77 16 27 H 0.15 4.61 8.06 -2.91 -0.02 4.59 16 28 H 0.15 3.80 8.14 -2.39 -0.02 3.78 16 29 H 0.15 3.43 8.14 -2.38 -0.02 3.41 16 30 H 0.27 15.92 8.31 -92.70 -0.77 15.15 16 31 H 0.07 3.26 8.09 -2.39 -0.02 3.24 16 32 H 0.05 2.12 7.31 -2.39 -0.02 2.10 16 33 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.08 2.74 6.68 -2.39 -0.02 2.72 16 36 H 0.09 3.65 8.09 -2.38 -0.02 3.63 16 Total: -1.00 -79.98 304.02 6.35 -73.63 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.93 Total: 21.11 kcal Atomic # 6 Polarization: -33.32 SS G_CDS: 3.55 Total: -29.77 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: 0.30 Total: -59.59 kcal Atomic # 8 Polarization: -50.22 SS G_CDS: -0.14 Total: -50.35 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.70 Total: 44.98 kcal Total: -79.98 6.35 -73.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810854322.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.203 kcal (2) G-P(sol) polarization free energy of solvation -79.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds