Wall clock time and date at job start Mon Mar 30 2020 06:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47246 * 2 1 4 4 C 1.50704 * 109.47336 * 239.99627 * 2 1 3 5 5 O 1.20822 * 120.00020 * 275.44692 * 4 2 1 6 6 O 1.34235 * 119.99815 * 95.44254 * 4 2 1 7 7 C 1.45199 * 116.99747 * 175.53675 * 6 4 2 8 8 C 1.50702 * 112.84930 * 65.10871 * 7 6 4 9 9 H 1.08004 * 119.99441 * 243.82084 * 8 7 6 10 10 C 1.37870 * 120.00387 * 63.81713 * 8 7 6 11 11 N 1.31511 * 120.00139 * 187.42644 * 10 8 7 12 12 Si 1.86800 * 119.99806 * 7.42882 * 10 8 7 13 13 H 1.48497 * 109.47230 * 87.77698 * 12 10 8 14 14 H 1.48502 * 109.47136 * 207.77393 * 12 10 8 15 15 H 1.48499 * 109.47194 * 327.77450 * 12 10 8 16 16 C 1.53780 * 113.61445 * 293.91096 * 7 6 4 17 17 C 1.53958 * 87.01816 * 220.04905 * 16 7 6 18 18 C 1.53780 * 113.61084 * 196.30200 * 7 6 4 19 19 C 1.50705 * 109.47131 * 119.99754 * 2 1 3 20 20 C 1.34511 * 125.78725 * 233.19231 * 19 2 1 21 21 C 1.41383 * 106.83824 * 179.97438 * 20 19 2 22 22 C 1.34512 * 106.83982 * 359.97438 * 21 20 19 23 23 O 1.34298 * 108.42597 * 0.02562 * 22 21 20 24 24 H 1.08993 * 109.47481 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46975 * 300.00484 * 1 2 3 26 26 H 1.09007 * 109.46966 * 60.00139 * 1 2 3 27 27 H 0.97002 * 119.99691 * 179.97438 * 11 10 8 28 28 H 1.09004 * 113.61222 * 334.56362 * 16 7 6 29 29 H 1.08998 * 113.61685 * 105.47149 * 16 7 6 30 30 H 1.08994 * 113.53727 * 270.80732 * 17 16 7 31 31 H 1.08999 * 113.73923 * 139.94176 * 17 16 7 32 32 H 1.08994 * 113.61448 * 254.52531 * 18 7 6 33 33 H 1.08998 * 113.61581 * 25.34901 * 18 7 6 34 34 H 1.08000 * 126.58268 * 359.94829 * 20 19 2 35 35 H 1.07998 * 126.58167 * 179.97438 * 21 20 19 36 36 H 1.08008 * 125.79004 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.1401 -1.9139 -1.2315 6 8 2.3600 -0.0063 -2.3253 7 6 2.9302 -0.7449 -3.4378 8 6 1.9619 -1.7265 -4.0461 9 1 2.1701 -2.7855 -4.0063 10 6 0.8103 -1.2727 -4.6533 11 7 -0.1035 -2.1295 -5.0536 12 14 0.5480 0.5593 -4.9073 13 1 1.1519 0.9712 -6.1999 14 1 -0.9075 0.8532 -4.9251 15 1 1.1911 1.3098 -3.7990 16 6 4.3106 -1.3499 -3.1327 17 6 4.7156 -0.9426 -4.5611 18 6 3.6346 0.1476 -4.4732 19 6 2.0323 -0.7104 1.2305 20 6 2.9109 -0.2156 2.1209 21 6 3.0968 -1.2099 3.1087 22 6 2.3203 -2.2525 2.7631 23 8 1.6780 -1.9445 1.6246 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.9139 -1.8102 -5.4805 28 1 4.8584 -0.8176 -2.3550 29 1 4.2896 -2.4281 -2.9746 30 1 4.5046 -1.7076 -5.3082 31 1 5.7290 -0.5477 -4.6342 32 1 3.0685 0.2765 -5.3957 33 1 3.9959 1.0907 -4.0630 34 1 3.3838 0.7548 2.0873 35 1 3.7390 -1.1448 3.9745 36 1 2.2289 -3.1801 3.3087 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810858477.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:25 Heat of formation + Delta-G solvation = -43.408297 kcal Electronic energy + Delta-G solvation = -20729.481642 eV Core-core repulsion = 17567.799932 eV Total energy + Delta-G solvation = -3161.681710 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.41290 -39.61991 -37.47690 -34.47923 -33.81947 -32.67279 -32.34522 -28.48218 -26.72760 -24.96504 -24.65941 -22.85586 -21.58178 -21.09950 -19.48744 -18.57951 -17.30949 -17.10199 -16.06218 -15.56981 -15.42761 -15.18140 -14.59447 -14.16731 -13.75970 -13.47120 -13.08510 -12.83648 -12.65606 -12.54656 -12.10335 -11.76623 -11.55590 -11.46036 -11.25471 -11.01611 -10.95451 -10.64804 -10.19734 -9.98270 -9.79874 -9.78047 -9.43253 -9.03399 -8.78573 -8.54206 -8.30121 -6.20469 -4.26142 1.86892 2.70661 3.04140 3.24308 3.29470 3.44315 3.48444 3.78227 4.37528 4.68232 5.07210 5.10871 5.12844 5.28884 5.35364 5.43873 5.49620 5.65807 5.76598 5.86507 5.88476 5.98429 6.01023 6.14076 6.24748 6.35733 6.37132 6.39628 6.61480 6.63905 6.83376 6.93661 7.23168 7.33834 7.51081 7.80033 8.40091 8.85981 8.98144 9.41181 10.90019 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.023751 B = 0.007179 C = 0.006454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.633808 B = 3899.194473 C = 4337.654285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.011 4.011 3 H 0.121 0.879 4 C 0.460 3.540 5 O -0.478 6.478 6 O -0.367 6.367 7 C 0.200 3.800 8 C -0.504 4.504 9 H 0.084 0.916 10 C 0.084 3.916 11 N -0.878 5.878 12 Si 0.863 3.137 13 H -0.277 1.277 14 H -0.292 1.292 15 H -0.236 1.236 16 C -0.146 4.146 17 C -0.124 4.124 18 C -0.134 4.134 19 C 0.015 3.985 20 C -0.212 4.212 21 C -0.219 4.219 22 C -0.040 4.040 23 O -0.153 6.153 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.267 0.733 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.945 6.293 11.814 14.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.031 4.031 3 H 0.139 0.861 4 C 0.300 3.700 5 O -0.363 6.363 6 O -0.285 6.285 7 C 0.166 3.834 8 C -0.541 4.541 9 H 0.102 0.898 10 C -0.121 4.121 11 N -0.515 5.515 12 Si 0.689 3.311 13 H -0.203 1.203 14 H -0.218 1.218 15 H -0.159 1.159 16 C -0.184 4.184 17 C -0.161 4.161 18 C -0.172 4.172 19 C -0.036 4.036 20 C -0.231 4.231 21 C -0.238 4.238 22 C -0.109 4.109 23 O -0.047 6.047 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.165 0.835 35 H 0.163 0.837 36 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 4.613 5.693 11.514 13.647 hybrid contribution -0.106 0.837 -0.058 0.846 sum 4.506 6.530 11.455 13.934 Atomic orbital electron populations 1.21726 0.91008 1.04108 1.03054 1.19570 0.98474 0.98857 0.86169 0.86059 1.22601 0.76288 0.86954 0.84154 1.90642 1.47889 1.15083 1.82723 1.86550 1.73155 1.44743 1.24062 1.21668 0.89950 0.89950 0.81825 1.20782 1.04158 0.93886 1.35260 0.89782 1.25005 0.95045 0.98029 0.94054 1.69939 1.08079 1.34784 1.38658 0.87099 0.77241 0.86660 0.80067 1.20308 1.21842 1.15892 1.23361 0.97618 1.01498 0.95945 1.22507 0.96662 0.99001 0.97939 1.23285 0.97512 0.97145 0.99244 1.21753 1.00003 0.84383 0.97491 1.21538 1.02744 1.02016 0.96820 1.21731 1.04856 0.94760 1.02499 1.24046 0.97688 1.01002 0.88147 1.84119 1.55597 1.30137 1.34887 0.90995 0.91181 0.90732 0.92346 0.91904 0.91193 0.89548 0.92399 0.91194 0.91261 0.83493 0.83654 0.78334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.15 37.16 0.34 -1.89 16 2 C -0.01 -0.19 3.22 -92.92 -0.30 -0.49 16 3 H 0.12 1.70 8.11 -51.93 -0.42 1.28 16 4 C 0.46 10.33 6.50 36.01 0.23 10.56 16 5 O -0.48 -12.39 14.68 -21.33 -0.31 -12.70 16 6 O -0.37 -8.60 8.12 -39.27 -0.32 -8.92 16 7 C 0.20 4.83 0.24 -90.96 -0.02 4.80 16 8 C -0.50 -14.35 7.64 -34.44 -0.26 -14.62 16 9 H 0.08 2.67 8.05 -52.48 -0.42 2.25 16 10 C 0.08 2.41 5.47 -17.82 -0.10 2.32 16 11 N -0.88 -26.73 13.96 55.43 0.77 -25.95 16 12 Si 0.86 21.19 24.56 -169.99 -4.18 17.02 16 13 H -0.28 -6.57 7.01 56.52 0.40 -6.18 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 15 H -0.24 -5.52 5.81 56.52 0.33 -5.20 16 16 C -0.15 -3.14 6.63 -25.83 -0.17 -3.31 16 17 C -0.12 -2.37 7.81 -25.82 -0.20 -2.57 16 18 C -0.13 -2.83 6.17 -25.92 -0.16 -2.99 16 19 C 0.01 0.25 5.46 -35.62 -0.19 0.05 16 20 C -0.21 -3.01 10.78 -39.70 -0.43 -3.44 16 21 C -0.22 -2.80 10.91 -39.70 -0.43 -3.24 16 22 C -0.04 -0.54 12.09 29.42 0.36 -0.19 16 23 O -0.15 -2.68 10.35 2.82 0.03 -2.65 16 24 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 27 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.07 1.60 8.09 -51.93 -0.42 1.18 16 30 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.07 1.53 5.65 -51.93 -0.29 1.24 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.20 1.85 8.06 -52.48 -0.42 1.43 16 LS Contribution 303.03 15.07 4.57 4.57 Total: -1.00 -33.58 303.03 -5.78 -39.35 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.00 Total: 4.28 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -1.34 Total: -14.99 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.77 Total: -25.95 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.60 Total: -24.27 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.18 Total: 17.02 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.58 -5.78 -39.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810858477.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.053 kcal (2) G-P(sol) polarization free energy of solvation -33.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds