Wall clock time and date at job start Mon Mar 30 2020 06:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47246 * 2 1 4 4 C 1.50704 * 109.47336 * 239.99627 * 2 1 3 5 5 O 1.20822 * 120.00020 * 275.44692 * 4 2 1 6 6 O 1.34235 * 119.99815 * 95.44254 * 4 2 1 7 7 C 1.45199 * 116.99747 * 175.53675 * 6 4 2 8 8 C 1.50702 * 112.84930 * 65.10871 * 7 6 4 9 9 H 1.08004 * 119.99441 * 243.82084 * 8 7 6 10 10 C 1.37870 * 120.00387 * 63.81713 * 8 7 6 11 11 N 1.31511 * 120.00139 * 187.42644 * 10 8 7 12 12 Si 1.86800 * 119.99806 * 7.42882 * 10 8 7 13 13 H 1.48497 * 109.47230 * 87.77698 * 12 10 8 14 14 H 1.48502 * 109.47136 * 207.77393 * 12 10 8 15 15 H 1.48499 * 109.47194 * 327.77450 * 12 10 8 16 16 C 1.53780 * 113.61445 * 293.91096 * 7 6 4 17 17 C 1.53958 * 87.01816 * 220.04905 * 16 7 6 18 18 C 1.53780 * 113.61084 * 196.30200 * 7 6 4 19 19 C 1.50705 * 109.47131 * 119.99754 * 2 1 3 20 20 C 1.34511 * 125.78725 * 233.19231 * 19 2 1 21 21 C 1.41383 * 106.83824 * 179.97438 * 20 19 2 22 22 C 1.34512 * 106.83982 * 359.97438 * 21 20 19 23 23 O 1.34298 * 108.42597 * 0.02562 * 22 21 20 24 24 H 1.08993 * 109.47481 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46975 * 300.00484 * 1 2 3 26 26 H 1.09007 * 109.46966 * 60.00139 * 1 2 3 27 27 H 0.97002 * 119.99691 * 179.97438 * 11 10 8 28 28 H 1.09004 * 113.61222 * 334.56362 * 16 7 6 29 29 H 1.08998 * 113.61685 * 105.47149 * 16 7 6 30 30 H 1.08994 * 113.53727 * 270.80732 * 17 16 7 31 31 H 1.08999 * 113.73923 * 139.94176 * 17 16 7 32 32 H 1.08994 * 113.61448 * 254.52531 * 18 7 6 33 33 H 1.08998 * 113.61581 * 25.34901 * 18 7 6 34 34 H 1.08000 * 126.58268 * 359.94829 * 20 19 2 35 35 H 1.07998 * 126.58167 * 179.97438 * 21 20 19 36 36 H 1.08008 * 125.79004 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.1401 -1.9139 -1.2315 6 8 2.3600 -0.0063 -2.3253 7 6 2.9302 -0.7449 -3.4378 8 6 1.9619 -1.7265 -4.0461 9 1 2.1701 -2.7855 -4.0063 10 6 0.8103 -1.2727 -4.6533 11 7 -0.1035 -2.1295 -5.0536 12 14 0.5480 0.5593 -4.9073 13 1 1.1519 0.9712 -6.1999 14 1 -0.9075 0.8532 -4.9251 15 1 1.1911 1.3098 -3.7990 16 6 4.3106 -1.3499 -3.1327 17 6 4.7156 -0.9426 -4.5611 18 6 3.6346 0.1476 -4.4732 19 6 2.0323 -0.7104 1.2305 20 6 2.9109 -0.2156 2.1209 21 6 3.0968 -1.2099 3.1087 22 6 2.3203 -2.2525 2.7631 23 8 1.6780 -1.9445 1.6246 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.9139 -1.8102 -5.4805 28 1 4.8584 -0.8176 -2.3550 29 1 4.2896 -2.4281 -2.9746 30 1 4.5046 -1.7076 -5.3082 31 1 5.7290 -0.5477 -4.6342 32 1 3.0685 0.2765 -5.3957 33 1 3.9959 1.0907 -4.0630 34 1 3.3838 0.7548 2.0873 35 1 3.7390 -1.1448 3.9745 36 1 2.2289 -3.1801 3.3087 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810858477.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:25 Heat of formation + Delta-G solvation = -64.855670 kcal Electronic energy + Delta-G solvation = -20730.411670 eV Core-core repulsion = 17567.799932 eV Total energy + Delta-G solvation = -3162.611738 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.53396 -41.40366 -39.21029 -36.28226 -35.19772 -34.53868 -33.77031 -29.59641 -28.75002 -26.67015 -26.19938 -24.52358 -22.67355 -22.49636 -20.82436 -20.50014 -19.09807 -18.39333 -17.60362 -17.29749 -17.15961 -16.74681 -16.17291 -15.72198 -15.43464 -14.91875 -14.81290 -14.52097 -13.67366 -13.65593 -13.55129 -13.46315 -13.21977 -12.92608 -12.80977 -12.64742 -12.61700 -12.36756 -12.02249 -11.81697 -11.67474 -11.26824 -11.02489 -10.81795 -10.63617 -10.54763 -9.43224 -8.41416 -6.53158 0.71869 1.30348 1.32392 1.50689 1.55255 1.68322 2.11438 2.24342 2.32187 2.96864 3.51410 3.75047 3.83219 3.94180 3.97374 4.08839 4.12788 4.20648 4.29240 4.41487 4.65520 4.70181 4.75198 4.82193 4.91677 4.99173 5.02363 5.07001 5.11262 5.19143 5.20954 5.52619 5.60716 5.65126 5.85095 6.26219 6.31267 6.56211 7.12743 7.21936 8.73999 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.023751 B = 0.007179 C = 0.006454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.633808 B = 3899.194473 C = 4337.654285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.002 4.002 3 H 0.160 0.840 4 C 0.451 3.549 5 O -0.526 6.526 6 O -0.365 6.365 7 C 0.179 3.821 8 C -0.510 4.510 9 H 0.023 0.977 10 C 0.026 3.974 11 N -0.934 5.934 12 Si 0.927 3.073 13 H -0.258 1.258 14 H -0.293 1.293 15 H -0.212 1.212 16 C -0.144 4.144 17 C -0.109 4.109 18 C -0.127 4.127 19 C -0.027 4.027 20 C -0.197 4.197 21 C -0.220 4.220 22 C -0.049 4.049 23 O -0.192 6.192 24 H 0.040 0.960 25 H 0.109 0.891 26 H 0.070 0.930 27 H 0.269 0.731 28 H 0.087 0.913 29 H 0.037 0.963 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.175 0.825 35 H 0.179 0.821 36 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.717 9.875 13.466 17.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.021 4.021 3 H 0.177 0.823 4 C 0.293 3.707 5 O -0.414 6.414 6 O -0.282 6.282 7 C 0.145 3.855 8 C -0.547 4.547 9 H 0.041 0.959 10 C -0.174 4.174 11 N -0.572 5.572 12 Si 0.749 3.251 13 H -0.183 1.183 14 H -0.220 1.220 15 H -0.134 1.134 16 C -0.182 4.182 17 C -0.146 4.146 18 C -0.164 4.164 19 C -0.077 4.077 20 C -0.216 4.216 21 C -0.239 4.239 22 C -0.116 4.116 23 O -0.088 6.088 24 H 0.060 0.940 25 H 0.127 0.873 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.105 0.895 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.123 0.877 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.193 0.807 35 H 0.196 0.804 36 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 6.408 9.289 13.175 17.347 hybrid contribution -0.621 -0.454 -0.434 0.883 sum 5.788 8.834 12.741 16.549 Atomic orbital electron populations 1.21744 0.90414 1.02672 1.04761 1.19686 0.98859 1.00026 0.83565 0.82282 1.23825 0.74889 0.86842 0.85106 1.90627 1.49825 1.17429 1.83544 1.86515 1.73307 1.44187 1.24234 1.21715 0.89809 0.91016 0.82950 1.20812 1.05751 0.92237 1.35898 0.95899 1.25955 0.94422 1.03485 0.93529 1.70095 1.09053 1.37463 1.40619 0.86095 0.77277 0.80197 0.81493 1.18257 1.22002 1.13402 1.23352 0.96643 0.99717 0.98498 1.22458 0.98817 0.97922 0.95435 1.23314 0.97048 0.98517 0.97516 1.21846 1.02470 0.84926 0.98474 1.21979 1.00736 1.03078 0.95808 1.22170 1.04738 0.93832 1.03111 1.24880 0.97060 1.02589 0.87118 1.84090 1.57006 1.31070 1.36609 0.94025 0.87276 0.91082 0.92198 0.89497 0.94374 0.91224 0.87666 0.92085 0.87602 0.80718 0.80371 0.75282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.25 9.15 71.98 0.66 -3.59 16 2 C 0.00 -0.08 3.22 -12.28 -0.04 -0.12 16 3 H 0.16 3.87 8.11 -2.38 -0.02 3.85 16 4 C 0.45 20.28 6.50 71.24 0.46 20.74 16 5 O -0.53 -28.56 14.68 24.44 0.36 -28.20 16 6 O -0.36 -16.62 8.12 -51.46 -0.42 -17.04 16 7 C 0.18 8.62 0.24 -11.01 0.00 8.62 16 8 C -0.51 -30.49 7.64 25.60 0.20 -30.29 16 9 H 0.02 1.59 8.05 -2.91 -0.02 1.56 16 10 C 0.03 1.54 5.47 84.65 0.46 2.01 16 11 N -0.93 -59.85 13.96 21.44 0.30 -59.55 16 12 Si 0.93 43.61 24.56 68.60 1.68 45.29 16 13 H -0.26 -11.27 7.01 99.48 0.70 -10.57 16 14 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 15 H -0.21 -9.08 5.81 99.48 0.58 -8.50 16 16 C -0.14 -6.14 6.63 31.18 0.21 -5.93 16 17 C -0.11 -3.94 7.81 31.18 0.24 -3.70 16 18 C -0.13 -4.96 6.17 31.12 0.19 -4.76 16 19 C -0.03 -0.87 5.46 24.83 0.14 -0.73 16 20 C -0.20 -4.96 10.78 22.19 0.24 -4.72 16 21 C -0.22 -4.92 10.91 22.19 0.24 -4.68 16 22 C -0.05 -1.25 12.09 66.97 0.81 -0.44 16 23 O -0.19 -6.72 10.35 0.30 0.00 -6.71 16 24 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 27 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 28 H 0.09 3.24 8.14 -2.38 -0.02 3.22 16 29 H 0.04 1.82 8.09 -2.39 -0.02 1.80 16 30 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.06 2.50 5.65 -2.39 -0.01 2.49 16 33 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 34 H 0.18 3.27 8.06 -2.91 -0.02 3.25 16 35 H 0.18 2.70 8.06 -2.91 -0.02 2.68 16 36 H 0.23 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -79.69 303.03 6.67 -73.03 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.93 Total: 20.79 kcal Atomic # 6 Polarization: -31.41 SS G_CDS: 3.81 Total: -27.60 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 0.30 Total: -59.55 kcal Atomic # 8 Polarization: -51.90 SS G_CDS: -0.06 Total: -51.96 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.68 Total: 45.29 kcal Total: -79.69 6.67 -73.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810858477.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.169 kcal (2) G-P(sol) polarization free energy of solvation -79.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds