Wall clock time and date at job start Mon Mar 30 2020 06:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99680 * 2 1 4 4 H 1.48502 * 109.47235 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47002 * 120.00160 * 3 2 1 6 6 H 1.48498 * 109.47165 * 240.00162 * 3 2 1 7 7 C 1.37871 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99889 * 181.78073 * 7 2 1 9 9 C 1.50698 * 120.00320 * 1.78465 * 7 2 1 10 10 O 1.45209 * 112.84767 * 298.52927 * 9 7 2 11 11 C 1.34231 * 116.99630 * 294.87811 * 10 9 7 12 12 O 1.20826 * 120.00310 * 3.01465 * 11 10 9 13 13 C 1.50695 * 119.99926 * 183.01797 * 11 10 9 14 14 C 1.52999 * 109.47422 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47422 * 180.02562 * 14 13 11 16 16 C 1.41386 * 126.58289 * 90.00119 * 15 14 13 17 17 C 1.34512 * 106.84362 * 179.97438 * 16 15 14 18 18 O 1.34299 * 108.42221 * 359.97438 * 17 16 15 19 19 C 1.34306 * 109.47658 * 359.76909 * 18 17 16 20 20 C 1.53778 * 113.61790 * 167.33510 * 9 7 2 21 21 C 1.53965 * 87.01865 * 220.04393 * 20 9 7 22 22 C 1.53782 * 113.61786 * 69.71800 * 9 7 2 23 23 H 0.97005 * 119.99716 * 175.05261 * 1 2 3 24 24 H 1.09002 * 109.47295 * 300.00250 * 13 11 10 25 25 H 1.09002 * 109.47553 * 60.00124 * 13 11 10 26 26 H 1.09002 * 109.47129 * 300.00400 * 14 13 11 27 27 H 1.09004 * 109.47160 * 60.00122 * 14 13 11 28 28 H 1.08008 * 126.57653 * 359.92526 * 16 15 14 29 29 H 1.08005 * 125.78327 * 179.97438 * 17 16 15 30 30 H 1.07994 * 125.79020 * 180.23000 * 19 18 17 31 31 H 1.09003 * 113.61463 * 334.56002 * 20 9 7 32 32 H 1.08998 * 113.61742 * 105.46749 * 20 9 7 33 33 H 1.08997 * 113.53497 * 270.81080 * 21 20 9 34 34 H 1.09004 * 113.74018 * 139.93945 * 21 20 9 35 35 H 1.08989 * 113.61692 * 254.53434 * 22 9 7 36 36 H 1.08997 * 113.60746 * 25.35640 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0841 -1.1942 0.0285 9 6 1.2517 -2.4988 -0.0418 10 8 0.3849 -2.6862 1.1081 11 6 0.9789 -2.8045 2.3060 12 8 2.1789 -2.6987 2.3984 13 6 0.1489 -3.0692 3.5357 14 6 1.0637 -3.1599 4.7587 15 6 0.2339 -3.4253 5.9882 16 6 -0.1189 -4.6913 6.5096 17 6 -0.8602 -4.4670 7.6094 18 8 -0.9740 -3.1399 7.7812 19 6 -0.3080 -2.5032 6.8041 20 6 2.1425 -3.7147 -0.3463 21 6 0.9944 -4.2328 -1.2317 22 6 0.5566 -2.7668 -1.3871 23 1 -0.4850 -0.8370 -0.0725 24 1 -0.5644 -2.2568 3.6745 25 1 -0.3899 -4.0090 3.4150 26 1 1.7767 -3.9726 4.6196 27 1 1.6029 -2.2203 4.8796 28 1 0.1538 -5.6538 6.1025 29 1 -1.2907 -5.2256 8.2463 30 1 -0.2243 -1.4324 6.6908 31 1 3.0455 -3.4658 -0.9037 32 1 2.3401 -4.3402 0.5242 33 1 0.2739 -4.8489 -0.6937 34 1 1.3300 -4.6894 -2.1628 35 1 -0.5240 -2.6282 -1.3556 36 1 1.0244 -2.2570 -2.2293 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810859413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:31 Heat of formation + Delta-G solvation = -61.380149 kcal Electronic energy + Delta-G solvation = -19952.718097 eV Core-core repulsion = 16790.257069 eV Total energy + Delta-G solvation = -3162.461028 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.54558 -39.58794 -37.34481 -34.76610 -34.13618 -32.38565 -31.34530 -29.16330 -26.10748 -24.96912 -24.59758 -22.53301 -21.60109 -20.54136 -19.78296 -18.37684 -17.59306 -17.22549 -16.03975 -15.79007 -15.31878 -15.20015 -14.64440 -14.31547 -13.75048 -13.55615 -13.28317 -12.82696 -12.52882 -12.34364 -12.22106 -12.06548 -11.52713 -11.39124 -10.84642 -10.72514 -10.51543 -10.38943 -10.16853 -10.09958 -10.01512 -9.70291 -9.35221 -8.99973 -8.55150 -8.44340 -8.14131 -6.37879 -4.15838 1.75130 2.57104 3.13024 3.38089 3.42691 3.44634 3.63500 3.86196 4.50462 4.78151 4.91286 5.10837 5.30571 5.35372 5.39630 5.52422 5.56225 5.67869 5.74690 5.81030 5.84295 6.05352 6.09724 6.28768 6.30418 6.32309 6.35300 6.53543 6.66717 6.69214 6.86549 7.08468 7.10510 7.36109 7.74882 8.17530 8.42363 8.82416 9.07516 9.60462 11.00057 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.021057 B = 0.005372 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.375395 B = 5210.961831 C = 6053.712598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.031 3.969 3 Si 1.064 2.936 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.593 4.593 8 H 0.058 0.942 9 C 0.212 3.788 10 O -0.356 6.356 11 C 0.462 3.538 12 O -0.504 6.504 13 C -0.111 4.111 14 C -0.037 4.037 15 C -0.173 4.173 16 C -0.207 4.207 17 C -0.049 4.049 18 O -0.180 6.180 19 C -0.040 4.040 20 C -0.144 4.144 21 C -0.149 4.149 22 C -0.111 4.111 23 H 0.279 0.721 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.147 0.853 29 H 0.200 0.800 30 H 0.203 0.797 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.307 -8.114 9.732 12.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.177 4.177 3 Si 0.892 3.108 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.212 1.212 7 C -0.630 4.630 8 H 0.076 0.924 9 C 0.178 3.822 10 O -0.273 6.273 11 C 0.304 3.696 12 O -0.393 6.393 13 C -0.149 4.149 14 C -0.075 4.075 15 C -0.174 4.174 16 C -0.226 4.226 17 C -0.116 4.116 18 O -0.076 6.076 19 C -0.107 4.107 20 C -0.182 4.182 21 C -0.186 4.186 22 C -0.149 4.149 23 H 0.091 0.909 24 H 0.114 0.886 25 H 0.110 0.890 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.165 0.835 29 H 0.216 0.784 30 H 0.220 0.780 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.303 -6.298 9.994 12.036 hybrid contribution 0.371 -1.818 -0.209 1.868 sum -1.931 -8.117 9.785 12.859 Atomic orbital electron populations 1.70699 1.06756 1.32016 1.43461 1.25839 0.96524 1.02519 0.92794 0.83621 0.75040 0.75339 0.76766 1.20721 1.21371 1.21224 1.22015 0.94356 0.90428 1.56187 0.92405 1.20838 0.86871 0.93897 0.80592 1.86376 1.43825 1.81122 1.15933 1.22933 0.87632 0.73873 0.85191 1.90571 1.16236 1.45484 1.86974 1.21326 0.98730 1.04285 0.90555 1.19739 0.95598 1.03810 0.88328 1.20527 1.04210 0.92891 0.99821 1.21791 1.03718 0.98931 0.98193 1.23966 1.04136 0.82777 1.00763 1.84055 1.59174 1.19023 1.45326 1.23973 0.98660 0.98640 0.89445 1.23351 0.97549 0.98566 0.98731 1.22988 0.99018 0.97325 0.99291 1.22967 1.00044 0.94031 0.97855 0.90911 0.88598 0.89018 0.90281 0.90062 0.83545 0.78357 0.78027 0.90059 0.92913 0.91286 0.92638 0.92355 0.89414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.51 55.43 0.75 -25.60 16 2 C 0.03 0.87 5.40 -17.82 -0.10 0.78 16 3 Si 1.06 25.32 29.90 -169.99 -5.08 20.23 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.59 -16.75 7.35 -34.44 -0.25 -17.00 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.21 5.36 0.11 -90.96 -0.01 5.35 16 10 O -0.36 -8.83 9.10 -39.26 -0.36 -9.19 16 11 C 0.46 10.49 7.34 36.00 0.26 10.76 16 12 O -0.50 -12.71 14.09 -18.75 -0.26 -12.98 16 13 C -0.11 -1.89 5.79 -27.89 -0.16 -2.05 16 14 C -0.04 -0.57 5.02 -27.89 -0.14 -0.71 16 15 C -0.17 -2.31 5.42 -104.74 -0.57 -2.88 16 16 C -0.21 -2.43 10.87 -39.70 -0.43 -2.86 16 17 C -0.05 -0.51 12.09 29.42 0.36 -0.15 16 18 O -0.18 -2.18 10.65 5.71 0.06 -2.12 16 19 C -0.04 -0.49 12.01 29.42 0.35 -0.14 16 20 C -0.14 -3.21 6.90 -25.82 -0.18 -3.39 16 21 C -0.15 -2.89 8.03 -25.82 -0.21 -3.10 16 22 C -0.11 -2.51 6.67 -25.92 -0.17 -2.68 16 23 H 0.28 8.20 5.76 -40.82 -0.24 7.97 16 24 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 25 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 26 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 27 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 28 H 0.15 1.48 8.06 -52.48 -0.42 1.05 16 29 H 0.20 1.24 8.06 -52.48 -0.42 0.82 16 30 H 0.20 2.00 8.06 -52.49 -0.42 1.58 16 31 H 0.08 1.78 8.09 -51.93 -0.42 1.36 16 32 H 0.05 1.17 7.32 -51.93 -0.38 0.79 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.06 1.32 7.77 -51.94 -0.40 0.91 16 36 H 0.09 1.98 8.09 -51.93 -0.42 1.56 16 LS Contribution 309.36 15.07 4.66 4.66 Total: -1.00 -32.83 309.36 -6.34 -39.18 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -4.87 Total: 3.88 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -1.25 Total: -18.07 kcal Atomic # 7 Polarization: -26.35 SS G_CDS: 0.75 Total: -25.60 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.56 Total: -24.28 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.08 Total: 20.23 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.83 -6.34 -39.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810859413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.202 kcal (2) G-P(sol) polarization free energy of solvation -32.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds