Wall clock time and date at job start Mon Mar 30 2020 06:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99680 * 2 1 4 4 H 1.48502 * 109.47235 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47002 * 120.00160 * 3 2 1 6 6 H 1.48498 * 109.47165 * 240.00162 * 3 2 1 7 7 C 1.37871 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99889 * 181.78073 * 7 2 1 9 9 C 1.50698 * 120.00320 * 1.78465 * 7 2 1 10 10 O 1.45209 * 112.84767 * 298.52927 * 9 7 2 11 11 C 1.34231 * 116.99630 * 294.87811 * 10 9 7 12 12 O 1.20826 * 120.00310 * 3.01465 * 11 10 9 13 13 C 1.50695 * 119.99926 * 183.01797 * 11 10 9 14 14 C 1.52999 * 109.47422 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47422 * 180.02562 * 14 13 11 16 16 C 1.41386 * 126.58289 * 90.00119 * 15 14 13 17 17 C 1.34512 * 106.84362 * 179.97438 * 16 15 14 18 18 O 1.34299 * 108.42221 * 359.97438 * 17 16 15 19 19 C 1.34306 * 109.47658 * 359.76909 * 18 17 16 20 20 C 1.53778 * 113.61790 * 167.33510 * 9 7 2 21 21 C 1.53965 * 87.01865 * 220.04393 * 20 9 7 22 22 C 1.53782 * 113.61786 * 69.71800 * 9 7 2 23 23 H 0.97005 * 119.99716 * 175.05261 * 1 2 3 24 24 H 1.09002 * 109.47295 * 300.00250 * 13 11 10 25 25 H 1.09002 * 109.47553 * 60.00124 * 13 11 10 26 26 H 1.09002 * 109.47129 * 300.00400 * 14 13 11 27 27 H 1.09004 * 109.47160 * 60.00122 * 14 13 11 28 28 H 1.08008 * 126.57653 * 359.92526 * 16 15 14 29 29 H 1.08005 * 125.78327 * 179.97438 * 17 16 15 30 30 H 1.07994 * 125.79020 * 180.23000 * 19 18 17 31 31 H 1.09003 * 113.61463 * 334.56002 * 20 9 7 32 32 H 1.08998 * 113.61742 * 105.46749 * 20 9 7 33 33 H 1.08997 * 113.53497 * 270.81080 * 21 20 9 34 34 H 1.09004 * 113.74018 * 139.93945 * 21 20 9 35 35 H 1.08989 * 113.61692 * 254.53434 * 22 9 7 36 36 H 1.08997 * 113.60746 * 25.35640 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0841 -1.1942 0.0285 9 6 1.2517 -2.4988 -0.0418 10 8 0.3849 -2.6862 1.1081 11 6 0.9789 -2.8045 2.3060 12 8 2.1789 -2.6987 2.3984 13 6 0.1489 -3.0692 3.5357 14 6 1.0637 -3.1599 4.7587 15 6 0.2339 -3.4253 5.9882 16 6 -0.1189 -4.6913 6.5096 17 6 -0.8602 -4.4670 7.6094 18 8 -0.9740 -3.1399 7.7812 19 6 -0.3080 -2.5032 6.8041 20 6 2.1425 -3.7147 -0.3463 21 6 0.9944 -4.2328 -1.2317 22 6 0.5566 -2.7668 -1.3871 23 1 -0.4850 -0.8370 -0.0725 24 1 -0.5644 -2.2568 3.6745 25 1 -0.3899 -4.0090 3.4150 26 1 1.7767 -3.9726 4.6196 27 1 1.6029 -2.2203 4.8796 28 1 0.1538 -5.6538 6.1025 29 1 -1.2907 -5.2256 8.2463 30 1 -0.2243 -1.4324 6.6908 31 1 3.0455 -3.4658 -0.9037 32 1 2.3401 -4.3402 0.5242 33 1 0.2739 -4.8489 -0.6937 34 1 1.3300 -4.6894 -2.1628 35 1 -0.5240 -2.6282 -1.3556 36 1 1.0244 -2.2570 -2.2293 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810859413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:31 Heat of formation + Delta-G solvation = -79.692772 kcal Electronic energy + Delta-G solvation = -19953.512192 eV Core-core repulsion = 16790.257069 eV Total energy + Delta-G solvation = -3163.255123 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.44601 -41.43597 -39.12728 -36.20317 -35.76407 -34.51542 -32.45538 -30.17403 -28.06831 -26.63733 -26.19137 -24.37086 -22.45825 -22.00963 -20.97839 -20.25103 -19.41574 -18.40877 -17.55404 -17.12372 -17.02720 -16.75802 -15.97232 -15.69018 -15.52562 -15.23680 -14.86894 -14.40876 -13.97839 -13.66817 -13.50455 -13.34585 -13.15764 -12.93785 -12.73678 -12.35176 -12.26971 -12.02564 -11.98559 -11.92465 -11.82160 -11.23377 -10.91944 -10.64041 -10.51102 -10.13953 -9.44548 -8.60106 -6.38782 0.86846 1.48935 1.53740 1.58077 1.62608 1.75909 2.16704 2.33521 2.52453 3.17700 3.69217 3.81140 3.85306 3.94799 3.97667 4.08979 4.17316 4.24442 4.32848 4.48364 4.61910 4.72924 4.76017 4.82380 4.88101 4.97474 5.04125 5.07134 5.20012 5.31915 5.35913 5.55193 5.57958 5.77888 6.10330 6.21159 6.27959 6.61432 7.20333 7.44158 8.77612 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.021057 B = 0.005372 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.375395 B = 5210.961831 C = 6053.712598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.011 4.011 3 Si 1.104 2.896 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.607 4.607 8 H 0.036 0.964 9 C 0.185 3.815 10 O -0.365 6.365 11 C 0.451 3.549 12 O -0.536 6.536 13 C -0.098 4.098 14 C -0.026 4.026 15 C -0.193 4.193 16 C -0.226 4.226 17 C -0.036 4.036 18 O -0.187 6.187 19 C -0.044 4.044 20 C -0.143 4.143 21 C -0.120 4.120 22 C -0.111 4.111 23 H 0.270 0.730 24 H 0.101 0.899 25 H 0.117 0.883 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.160 0.840 29 H 0.240 0.760 30 H 0.218 0.782 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.052 0.948 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.988 -9.177 10.464 14.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.214 4.214 3 Si 0.927 3.073 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.644 4.644 8 H 0.054 0.946 9 C 0.151 3.849 10 O -0.282 6.282 11 C 0.295 3.705 12 O -0.426 6.426 13 C -0.136 4.136 14 C -0.063 4.063 15 C -0.194 4.194 16 C -0.245 4.245 17 C -0.103 4.103 18 O -0.083 6.083 19 C -0.112 4.112 20 C -0.181 4.181 21 C -0.158 4.158 22 C -0.149 4.149 23 H 0.081 0.919 24 H 0.120 0.880 25 H 0.135 0.865 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.177 0.823 29 H 0.256 0.744 30 H 0.234 0.766 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.071 0.929 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.990 -7.382 10.724 13.358 hybrid contribution 0.607 -1.541 -0.373 1.698 sum -2.383 -8.923 10.351 13.873 Atomic orbital electron populations 1.70801 1.07302 1.31492 1.45470 1.27022 0.96700 1.05579 0.92064 0.83108 0.74407 0.72259 0.77573 1.20240 1.21143 1.19164 1.22218 0.93571 0.92454 1.56202 0.94587 1.21090 0.88281 0.93831 0.81720 1.86358 1.43834 1.81300 1.16712 1.24051 0.87957 0.72646 0.85879 1.90544 1.17854 1.46923 1.87318 1.21394 0.98302 1.05565 0.88290 1.19546 0.95365 1.02827 0.88603 1.20436 1.05093 0.94335 0.99565 1.22025 1.04598 0.98853 0.99022 1.24738 1.02630 0.82573 1.00374 1.84079 1.59054 1.20012 1.45171 1.24285 0.98250 0.99404 0.89226 1.23302 0.98103 0.97474 0.99227 1.22857 0.97294 0.95486 1.00129 1.22913 0.99380 0.96493 0.96130 0.91877 0.88047 0.86519 0.90834 0.91611 0.82264 0.74389 0.76575 0.90370 0.93390 0.89878 0.89262 0.92875 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.53 13.51 21.45 0.29 -54.24 16 2 C -0.01 -0.64 5.40 84.65 0.46 -0.19 16 3 Si 1.10 51.36 29.90 68.60 2.05 53.41 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.61 -35.01 7.35 25.60 0.19 -34.82 16 8 H 0.04 2.17 7.81 -2.91 -0.02 2.15 16 9 C 0.19 9.43 0.11 -11.01 0.00 9.43 16 10 O -0.36 -18.27 9.10 -51.42 -0.47 -18.73 16 11 C 0.45 20.67 7.34 71.23 0.52 21.19 16 12 O -0.54 -27.66 14.09 21.96 0.31 -27.35 16 13 C -0.10 -3.28 5.79 29.85 0.17 -3.10 16 14 C -0.03 -0.78 5.02 29.85 0.15 -0.63 16 15 C -0.19 -4.92 5.42 -19.94 -0.11 -5.03 16 16 C -0.23 -4.81 10.87 22.19 0.24 -4.57 16 17 C -0.04 -0.64 12.09 66.97 0.81 0.17 16 18 O -0.19 -4.12 10.65 -2.47 -0.03 -4.15 16 19 C -0.04 -1.03 12.01 66.97 0.80 -0.22 16 20 C -0.14 -6.32 6.90 31.18 0.22 -6.11 16 21 C -0.12 -4.42 8.03 31.18 0.25 -4.17 16 22 C -0.11 -4.98 6.67 31.12 0.21 -4.77 16 23 H 0.27 16.17 5.76 -92.70 -0.53 15.63 16 24 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 25 H 0.12 3.32 8.14 -2.39 -0.02 3.31 16 26 H 0.07 2.27 8.10 -2.39 -0.02 2.25 16 27 H 0.07 2.15 8.10 -2.38 -0.02 2.14 16 28 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 29 H 0.24 1.97 8.06 -2.91 -0.02 1.95 16 30 H 0.22 4.07 8.06 -2.91 -0.02 4.04 16 31 H 0.08 3.43 8.09 -2.39 -0.02 3.41 16 32 H 0.05 2.12 7.32 -2.39 -0.02 2.10 16 33 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 34 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 35 H 0.05 2.39 7.77 -2.39 -0.02 2.37 16 36 H 0.08 3.67 8.09 -2.39 -0.02 3.65 16 Total: -1.00 -71.63 309.36 7.37 -64.26 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 1.30 Total: 19.62 kcal Atomic # 6 Polarization: -36.73 SS G_CDS: 3.91 Total: -32.82 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.29 Total: -54.24 kcal Atomic # 8 Polarization: -50.05 SS G_CDS: -0.18 Total: -50.23 kcal Atomic # 14 Polarization: 51.36 SS G_CDS: 2.05 Total: 53.41 kcal Total: -71.63 7.37 -64.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810859413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.430 kcal (2) G-P(sol) polarization free energy of solvation -71.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds