Wall clock time and date at job start Mon Mar 30 2020 06:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34758 * 116.99671 * 2 1 4 4 O 1.21501 * 119.99992 * 0.02562 * 3 2 1 5 5 C 1.47470 * 119.99652 * 179.97438 * 3 2 1 6 6 C 1.39792 * 120.09093 * 179.97438 * 5 3 2 7 7 C 1.37678 * 119.90705 * 179.70072 * 6 5 3 8 8 C 1.39010 * 120.09177 * 0.26459 * 7 6 5 9 9 O 1.35703 * 119.90592 * 180.02562 * 8 7 6 10 10 C 1.42901 * 116.99601 * 174.63502 * 9 8 7 11 11 H 1.09000 * 109.47484 * 324.68929 * 10 9 8 12 12 C 1.52992 * 109.47369 * 84.69633 * 10 9 8 13 13 C 1.53008 * 109.46746 * 204.69072 * 10 9 8 14 14 C 1.50707 * 109.46752 * 65.00047 * 13 10 9 15 15 H 1.07993 * 119.99958 * 359.97438 * 14 13 10 16 16 C 1.37874 * 119.99656 * 180.02562 * 14 13 10 17 17 N 1.31525 * 120.00030 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00054 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47314 * 59.99469 * 18 16 14 20 20 H 1.48501 * 109.47434 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46809 * 299.99611 * 18 16 14 22 22 C 1.39018 * 120.18563 * 0.02562 * 8 7 6 23 23 C 1.37676 * 120.09632 * 0.02562 * 22 8 7 24 24 H 1.09001 * 109.47205 * 59.99848 * 1 2 3 25 25 H 1.09001 * 109.47074 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47430 * 299.99676 * 1 2 3 27 27 H 1.08000 * 120.04677 * 359.97438 * 6 5 3 28 28 H 1.07993 * 119.95504 * 180.28110 * 7 6 5 29 29 H 1.09006 * 109.47457 * 180.02562 * 12 10 9 30 30 H 1.09002 * 109.47355 * 299.99162 * 12 10 9 31 31 H 1.08998 * 109.47663 * 59.99698 * 12 10 9 32 32 H 1.08996 * 109.46993 * 185.00059 * 13 10 9 33 33 H 1.08995 * 109.47131 * 305.00444 * 13 10 9 34 34 H 0.97006 * 119.99505 * 180.02562 * 17 16 14 35 35 H 1.08001 * 119.94903 * 180.02562 * 22 8 7 36 36 H 1.07999 * 120.04828 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4019 2.2197 0.0005 5 6 3.5364 1.2779 0.0006 6 6 4.1730 2.5225 0.0000 7 6 5.5481 2.5901 0.0068 8 6 6.3033 1.4231 0.0086 9 8 7.6585 1.4941 0.0158 10 6 8.3720 0.2619 0.1363 11 1 7.8210 -0.4147 0.7895 12 6 8.5257 -0.3758 -1.2458 13 6 9.7561 0.5302 0.7309 14 6 9.6066 1.0439 2.1398 15 1 8.6229 1.1671 2.5681 16 6 10.7257 1.3575 2.8815 17 7 11.9237 1.2079 2.3597 18 14 10.5405 1.9935 4.6281 19 1 9.8365 0.9787 5.4525 20 1 11.8837 2.2552 5.2047 21 1 9.7539 3.2531 4.6154 22 6 5.6742 0.1834 0.0031 23 6 4.2996 0.1068 -0.0048 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.5869 3.4296 -0.0012 28 1 6.0407 3.5511 0.0110 29 1 9.0696 -1.3160 -1.1538 30 1 7.5397 -0.5670 -1.6694 31 1 9.0768 0.3008 -1.8990 32 1 10.3328 -0.3946 0.7406 33 1 10.2734 1.2747 0.1258 34 1 12.7110 1.4283 2.8818 35 1 6.2647 -0.7209 0.0049 36 1 3.8117 -0.8567 -0.0087 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829179073.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:54 Heat of formation + Delta-G solvation = -109.331612 kcal Electronic energy + Delta-G solvation = -19237.282511 eV Core-core repulsion = 16072.742152 eV Total energy + Delta-G solvation = -3164.540359 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.58904 -39.72314 -37.35456 -36.34570 -33.60209 -31.90687 -30.85902 -30.24097 -27.69040 -27.53290 -24.04116 -23.11531 -22.88811 -21.11847 -19.90913 -18.22202 -17.63346 -16.93400 -16.44101 -16.39719 -15.44704 -14.82519 -14.65326 -14.46237 -14.10776 -13.58564 -13.50755 -13.23753 -12.85893 -12.53630 -12.25006 -12.09172 -11.93594 -11.84744 -11.46791 -11.21794 -10.92584 -10.78985 -10.76675 -10.55920 -10.49281 -10.11309 -9.48775 -9.20507 -9.00649 -8.43903 -8.00959 -6.07196 -4.09444 0.88054 1.43506 2.61179 2.65228 3.31540 3.35764 3.39176 3.68096 3.90029 4.41768 4.74857 4.87636 4.93595 4.96519 5.00040 5.26896 5.30048 5.31877 5.46668 5.54275 5.61672 5.66871 5.86612 6.03557 6.05087 6.14193 6.31356 6.38633 6.43918 6.53250 6.64242 6.76971 7.39436 7.49136 7.72586 7.88474 7.94496 8.27914 8.93833 9.54603 11.04016 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.026173 B = 0.004147 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.529038 B = 6749.727141 C = 7249.289926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.516 3.484 4 O -0.519 6.519 5 C -0.194 4.194 6 C -0.012 4.012 7 C -0.176 4.176 8 C 0.193 3.807 9 O -0.282 6.282 10 C 0.082 3.918 11 H 0.067 0.933 12 C -0.179 4.179 13 C 0.026 3.974 14 C -0.519 4.519 15 H 0.056 0.944 16 C 0.059 3.941 17 N -0.896 5.896 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.233 4.233 23 C -0.017 4.017 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.138 0.862 28 H 0.140 0.860 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.040 0.960 33 H 0.030 0.970 34 H 0.262 0.738 35 H 0.140 0.860 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.831 -3.741 -6.468 18.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.275 6.275 3 C 0.363 3.637 4 O -0.409 6.409 5 C -0.195 4.195 6 C -0.030 4.030 7 C -0.195 4.195 8 C 0.144 3.856 9 O -0.193 6.193 10 C 0.027 3.973 11 H 0.085 0.915 12 C -0.236 4.236 13 C -0.011 4.011 14 C -0.557 4.557 15 H 0.074 0.926 16 C -0.142 4.142 17 N -0.535 5.535 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.252 4.252 23 C -0.036 4.036 24 H 0.080 0.920 25 H 0.118 0.882 26 H 0.080 0.920 27 H 0.156 0.844 28 H 0.158 0.842 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.158 0.842 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.703 -3.279 -6.441 18.200 hybrid contribution -0.236 0.165 1.009 1.049 sum -16.939 -3.114 -5.433 18.059 Atomic orbital electron populations 1.23231 0.76409 1.03515 1.02487 1.86558 1.23230 1.33051 1.84643 1.21190 0.89180 0.81139 0.72167 1.90807 1.66945 1.36022 1.47116 1.18806 0.88468 0.95036 1.17194 1.20957 0.93427 0.96564 0.92095 1.20426 0.92469 0.97760 1.08815 1.19634 0.84657 0.93573 0.87751 1.86284 1.13240 1.35705 1.84038 1.23023 0.96133 0.82850 0.95260 0.91517 1.22429 1.01547 1.01599 0.98038 1.19281 0.87456 0.98397 0.95968 1.21072 0.92691 1.43911 0.98000 0.92624 1.24974 0.95250 0.95572 0.98444 1.69941 0.97560 1.48667 1.37325 0.86629 0.77166 0.79575 0.84524 1.20214 1.21231 1.20118 1.21397 0.95270 0.97775 1.10729 1.21163 0.93012 0.97663 0.91727 0.91994 0.88170 0.91951 0.84374 0.84191 0.91098 0.93121 0.91743 0.94153 0.95169 0.92798 0.84219 0.84708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.27 9.81 -40.65 -0.40 -4.67 16 3 C 0.52 7.26 7.89 34.49 0.27 7.53 16 4 O -0.52 -8.27 16.13 -19.27 -0.31 -8.58 16 5 C -0.19 -2.73 5.87 -104.97 -0.62 -3.35 16 6 C -0.01 -0.17 9.58 -39.21 -0.38 -0.55 16 7 C -0.18 -2.69 9.97 -39.50 -0.39 -3.09 16 8 C 0.19 3.27 6.61 -39.01 -0.26 3.02 16 9 O -0.28 -5.62 9.54 -18.81 -0.18 -5.80 16 10 C 0.08 1.60 2.17 -26.73 -0.06 1.54 16 11 H 0.07 1.25 6.31 -51.93 -0.33 0.92 16 12 C -0.18 -2.80 9.16 37.15 0.34 -2.46 16 13 C 0.03 0.63 4.68 -27.88 -0.13 0.50 16 14 C -0.52 -14.24 8.88 -34.44 -0.31 -14.55 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.90 -26.20 13.29 55.43 0.74 -25.46 16 18 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C -0.23 -3.44 8.20 -39.50 -0.32 -3.76 16 23 C -0.02 -0.23 9.61 -39.21 -0.38 -0.61 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.14 1.76 7.64 -52.49 -0.40 1.36 16 28 H 0.14 2.00 8.06 -52.49 -0.42 1.57 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.69 6.88 -51.93 -0.36 0.33 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.14 1.92 5.39 -52.49 -0.28 1.63 16 36 H 0.14 1.48 7.60 -52.49 -0.40 1.08 16 LS Contribution 313.19 15.07 4.72 4.72 Total: -1.00 -31.07 313.19 -6.40 -37.47 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -4.69 Total: -1.31 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -1.26 Total: -12.83 kcal Atomic # 7 Polarization: -26.20 SS G_CDS: 0.74 Total: -25.46 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.89 Total: -19.05 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.07 -6.40 -37.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179073.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.866 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds