Wall clock time and date at job start Mon Mar 30 2020 06:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34749 * 116.99745 * 2 1 4 4 O 1.21500 * 119.99946 * 0.02562 * 3 2 1 5 5 C 1.47470 * 119.99675 * 179.97438 * 3 2 1 6 6 C 1.39803 * 120.08729 * 180.02562 * 5 3 2 7 7 C 1.37682 * 119.90167 * 180.02562 * 6 5 3 8 8 C 1.39010 * 120.09486 * 0.02562 * 7 6 5 9 9 O 1.35693 * 119.90735 * 179.72118 * 8 7 6 10 10 C 1.42904 * 117.00360 * 185.46078 * 9 8 7 11 11 H 1.09006 * 109.46697 * 35.22291 * 10 9 8 12 12 C 1.52996 * 109.47093 * 275.22721 * 10 9 8 13 13 C 1.52993 * 109.47287 * 155.22048 * 10 9 8 14 14 C 1.50694 * 109.47354 * 295.00527 * 13 10 9 15 15 H 1.08000 * 120.00069 * 359.97438 * 14 13 10 16 16 C 1.37880 * 120.00214 * 180.02562 * 14 13 10 17 17 N 1.31515 * 120.00333 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 119.99777 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46851 * 90.00186 * 18 16 14 20 20 H 1.48496 * 109.47276 * 209.99994 * 18 16 14 21 21 H 1.48490 * 109.47301 * 330.00609 * 18 16 14 22 22 C 1.39019 * 120.18799 * 359.97438 * 8 7 6 23 23 C 1.37682 * 120.09090 * 359.97438 * 22 8 7 24 24 H 1.08995 * 109.47456 * 299.99846 * 1 2 3 25 25 H 1.09006 * 109.47020 * 60.00266 * 1 2 3 26 26 H 1.09003 * 109.46787 * 179.97438 * 1 2 3 27 27 H 1.07993 * 120.04696 * 0.05078 * 6 5 3 28 28 H 1.07994 * 119.95142 * 179.97438 * 7 6 5 29 29 H 1.09006 * 109.46998 * 299.99386 * 12 10 9 30 30 H 1.08998 * 109.47524 * 59.99881 * 12 10 9 31 31 H 1.09006 * 109.47155 * 179.97438 * 12 10 9 32 32 H 1.09007 * 109.47058 * 55.00313 * 13 10 9 33 33 H 1.08999 * 109.47311 * 175.00115 * 13 10 9 34 34 H 0.97000 * 119.99934 * 179.97438 * 17 16 14 35 35 H 1.08003 * 119.95618 * 179.97438 * 22 8 7 36 36 H 1.07996 * 120.04550 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2196 0.0005 5 6 3.5364 1.2778 0.0006 6 6 4.1730 2.5225 0.0011 7 6 5.5481 2.5901 0.0011 8 6 6.3034 1.4230 0.0000 9 8 7.6584 1.4941 -0.0057 10 6 8.3723 0.2621 -0.1276 11 1 7.8210 -0.4140 -0.7813 12 6 8.5262 -0.3770 1.2539 13 6 9.7560 0.5311 -0.7223 14 6 9.6061 1.0462 -2.1305 15 1 8.6223 1.1690 -2.5588 16 6 10.7250 1.3597 -2.8727 17 7 10.5942 1.8088 -4.1019 18 14 12.4268 1.1467 -2.1322 19 1 12.9241 -0.2225 -2.4206 20 1 13.3530 2.1448 -2.7248 21 1 12.3560 1.3482 -0.6628 22 6 5.6743 0.1833 -0.0005 23 6 4.2996 0.1068 0.0006 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 3.5869 3.4296 0.0019 28 1 6.0407 3.5511 0.0011 29 1 9.0774 0.2991 1.9076 30 1 7.5404 -0.5687 1.6775 31 1 9.0703 -1.3170 1.1608 32 1 10.2734 1.2751 -0.1165 33 1 10.3329 -0.3936 -0.7331 34 1 11.3814 2.0297 -4.6238 35 1 6.2648 -0.7210 -0.0018 36 1 3.8117 -0.8567 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829179074.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:55 Heat of formation + Delta-G solvation = -104.899603 kcal Electronic energy + Delta-G solvation = -19246.168019 eV Core-core repulsion = 16081.819846 eV Total energy + Delta-G solvation = -3164.348173 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.58441 -39.75199 -37.38758 -36.33721 -33.62994 -31.99130 -30.91117 -30.26579 -28.10122 -27.66437 -24.05965 -23.01311 -22.74490 -21.06624 -19.89528 -18.24290 -17.65640 -16.95801 -16.80347 -16.38536 -15.47712 -14.91543 -14.69125 -14.27730 -14.11999 -13.55912 -13.48895 -13.26346 -12.91434 -12.58745 -12.43852 -12.20862 -12.08438 -11.93611 -11.83765 -11.34115 -10.91273 -10.83271 -10.72644 -10.53249 -10.40290 -9.82412 -9.69879 -9.30349 -8.99784 -8.60384 -8.02900 -6.08936 -4.08006 0.88610 1.44321 2.62065 2.66495 3.25163 3.34153 3.35914 3.62003 3.90726 4.39182 4.75670 4.87816 4.94892 4.96399 5.01645 5.24232 5.26039 5.33077 5.38882 5.45998 5.53753 5.61327 5.78625 5.96621 6.05009 6.12292 6.27539 6.30717 6.41548 6.44198 6.51691 6.73009 6.95414 7.09884 7.64595 7.73951 7.86510 8.44913 8.94989 9.51083 11.04381 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.034779 B = 0.003901 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.891235 B = 7175.433743 C = 7437.950641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.516 3.484 4 O -0.518 6.518 5 C -0.192 4.192 6 C -0.012 4.012 7 C -0.173 4.173 8 C 0.193 3.807 9 O -0.282 6.282 10 C 0.092 3.908 11 H 0.072 0.928 12 C -0.182 4.182 13 C -0.011 4.011 14 C -0.519 4.519 15 H 0.073 0.927 16 C 0.068 3.932 17 N -0.899 5.899 18 Si 0.877 3.123 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.265 1.265 22 C -0.232 4.232 23 C -0.017 4.017 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.100 0.900 27 H 0.139 0.861 28 H 0.141 0.859 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.029 0.971 33 H 0.035 0.965 34 H 0.264 0.736 35 H 0.140 0.860 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.000 -5.149 10.723 18.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.275 6.275 3 C 0.363 3.637 4 O -0.408 6.408 5 C -0.193 4.193 6 C -0.030 4.030 7 C -0.192 4.192 8 C 0.144 3.856 9 O -0.192 6.192 10 C 0.036 3.964 11 H 0.090 0.910 12 C -0.239 4.239 13 C -0.048 4.048 14 C -0.557 4.557 15 H 0.091 0.909 16 C -0.133 4.133 17 N -0.538 5.538 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.190 1.190 22 C -0.251 4.251 23 C -0.036 4.036 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.118 0.882 27 H 0.157 0.843 28 H 0.159 0.841 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.157 0.843 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.966 -4.641 10.577 18.124 hybrid contribution 0.715 -0.252 0.146 0.772 sum -13.251 -4.894 10.723 17.734 Atomic orbital electron populations 1.23233 0.76396 1.03514 1.02499 1.86556 1.23240 1.33046 1.84639 1.21181 0.89170 0.81149 0.72180 1.90809 1.66935 1.36019 1.47068 1.18813 0.88496 0.95032 1.16993 1.20965 0.93413 0.96593 0.92048 1.20423 0.92473 0.97753 1.08541 1.19583 0.84362 0.93639 0.87979 1.86249 1.13515 1.35236 1.84250 1.22711 0.95240 0.83230 0.95194 0.90964 1.22465 1.01934 1.01514 0.97983 1.19738 0.89854 0.97690 0.97528 1.20988 0.95110 1.43817 0.95796 0.90882 1.24998 0.99086 0.94561 0.94671 1.69907 1.29960 1.44660 1.09254 0.86820 0.84522 0.78143 0.80057 1.20238 1.21228 1.18954 1.21377 0.95305 0.97672 1.10750 1.21156 0.92992 0.97689 0.91736 0.91996 0.91929 0.88173 0.84310 0.84140 0.91747 0.92721 0.91077 0.95225 0.94743 0.92635 0.84264 0.84677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.57 101.05 1.07 1.39 16 2 O -0.36 -4.31 9.81 -40.63 -0.40 -4.71 16 3 C 0.52 7.33 7.89 34.49 0.27 7.60 16 4 O -0.52 -8.34 16.13 -19.27 -0.31 -8.65 16 5 C -0.19 -2.74 5.87 -104.97 -0.62 -3.35 16 6 C -0.01 -0.17 9.59 -39.20 -0.38 -0.55 16 7 C -0.17 -2.68 9.97 -39.50 -0.39 -3.08 16 8 C 0.19 3.28 6.61 -39.01 -0.26 3.02 16 9 O -0.28 -5.53 9.54 -18.78 -0.18 -5.71 16 10 C 0.09 1.71 2.17 -26.74 -0.06 1.65 16 11 H 0.07 1.32 6.30 -51.93 -0.33 0.99 16 12 C -0.18 -2.64 9.16 37.16 0.34 -2.30 16 13 C -0.01 -0.25 3.75 -27.89 -0.10 -0.35 16 14 C -0.52 -14.40 9.43 -34.44 -0.32 -14.73 16 15 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 16 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 18 Si 0.88 21.02 27.47 -169.99 -4.67 16.36 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 22 C -0.23 -3.42 8.21 -39.50 -0.32 -3.75 16 23 C -0.02 -0.23 9.61 -39.21 -0.38 -0.61 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.14 1.80 7.64 -52.49 -0.40 1.40 16 28 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.70 6.89 -51.93 -0.36 0.34 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.03 0.68 7.20 -51.92 -0.37 0.31 16 33 H 0.03 0.74 7.57 -51.93 -0.39 0.35 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.14 1.88 5.40 -52.48 -0.28 1.59 16 36 H 0.14 1.49 7.60 -52.49 -0.40 1.09 16 LS Contribution 309.62 15.07 4.67 4.67 Total: -1.00 -32.06 309.62 -6.03 -38.09 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -4.66 Total: -0.23 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -1.25 Total: -13.19 kcal Atomic # 7 Polarization: -27.40 SS G_CDS: 0.77 Total: -26.62 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.89 Total: -19.07 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.36 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.06 -6.03 -38.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179074.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.813 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds