Wall clock time and date at job start Mon Mar 30 2020 06:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34749 * 116.99745 * 2 1 4 4 O 1.21500 * 119.99946 * 0.02562 * 3 2 1 5 5 C 1.47470 * 119.99675 * 179.97438 * 3 2 1 6 6 C 1.39803 * 120.08729 * 180.02562 * 5 3 2 7 7 C 1.37682 * 119.90167 * 180.02562 * 6 5 3 8 8 C 1.39010 * 120.09486 * 0.02562 * 7 6 5 9 9 O 1.35693 * 119.90735 * 179.72118 * 8 7 6 10 10 C 1.42904 * 117.00360 * 185.46078 * 9 8 7 11 11 H 1.09006 * 109.46697 * 35.22291 * 10 9 8 12 12 C 1.52996 * 109.47093 * 275.22721 * 10 9 8 13 13 C 1.52993 * 109.47287 * 155.22048 * 10 9 8 14 14 C 1.50694 * 109.47354 * 295.00527 * 13 10 9 15 15 H 1.08000 * 120.00069 * 359.97438 * 14 13 10 16 16 C 1.37880 * 120.00214 * 180.02562 * 14 13 10 17 17 N 1.31515 * 120.00333 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 119.99777 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46851 * 90.00186 * 18 16 14 20 20 H 1.48496 * 109.47276 * 209.99994 * 18 16 14 21 21 H 1.48490 * 109.47301 * 330.00609 * 18 16 14 22 22 C 1.39019 * 120.18799 * 359.97438 * 8 7 6 23 23 C 1.37682 * 120.09090 * 359.97438 * 22 8 7 24 24 H 1.08995 * 109.47456 * 299.99846 * 1 2 3 25 25 H 1.09006 * 109.47020 * 60.00266 * 1 2 3 26 26 H 1.09003 * 109.46787 * 179.97438 * 1 2 3 27 27 H 1.07993 * 120.04696 * 0.05078 * 6 5 3 28 28 H 1.07994 * 119.95142 * 179.97438 * 7 6 5 29 29 H 1.09006 * 109.46998 * 299.99386 * 12 10 9 30 30 H 1.08998 * 109.47524 * 59.99881 * 12 10 9 31 31 H 1.09006 * 109.47155 * 179.97438 * 12 10 9 32 32 H 1.09007 * 109.47058 * 55.00313 * 13 10 9 33 33 H 1.08999 * 109.47311 * 175.00115 * 13 10 9 34 34 H 0.97000 * 119.99934 * 179.97438 * 17 16 14 35 35 H 1.08003 * 119.95618 * 179.97438 * 22 8 7 36 36 H 1.07996 * 120.04550 * 180.02562 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2196 0.0005 5 6 3.5364 1.2778 0.0006 6 6 4.1730 2.5225 0.0011 7 6 5.5481 2.5901 0.0011 8 6 6.3034 1.4230 0.0000 9 8 7.6584 1.4941 -0.0057 10 6 8.3723 0.2621 -0.1276 11 1 7.8210 -0.4140 -0.7813 12 6 8.5262 -0.3770 1.2539 13 6 9.7560 0.5311 -0.7223 14 6 9.6061 1.0462 -2.1305 15 1 8.6223 1.1690 -2.5588 16 6 10.7250 1.3597 -2.8727 17 7 10.5942 1.8088 -4.1019 18 14 12.4268 1.1467 -2.1322 19 1 12.9241 -0.2225 -2.4206 20 1 13.3530 2.1448 -2.7248 21 1 12.3560 1.3482 -0.6628 22 6 5.6743 0.1833 -0.0005 23 6 4.2996 0.1068 0.0006 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 3.5869 3.4296 0.0019 28 1 6.0407 3.5511 0.0011 29 1 9.0774 0.2991 1.9076 30 1 7.5404 -0.5687 1.6775 31 1 9.0703 -1.3170 1.1608 32 1 10.2734 1.2751 -0.1165 33 1 10.3329 -0.3936 -0.7331 34 1 11.3814 2.0297 -4.6238 35 1 6.2648 -0.7210 -0.0018 36 1 3.8117 -0.8567 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829179074.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:55 Heat of formation + Delta-G solvation = -124.129519 kcal Electronic energy + Delta-G solvation = -19247.001891 eV Core-core repulsion = 16081.819846 eV Total energy + Delta-G solvation = -3165.182045 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.70454 -40.97546 -38.60835 -37.41281 -35.43622 -33.74333 -32.12688 -31.44229 -29.80073 -28.47457 -25.37319 -24.46388 -24.08168 -22.30950 -21.27644 -19.45930 -18.93775 -18.78082 -18.04016 -17.36189 -16.85189 -16.39708 -15.97186 -15.81552 -15.19184 -14.92107 -14.59314 -14.48938 -14.38846 -13.94480 -13.81951 -13.55907 -13.44118 -13.16085 -12.95413 -12.76049 -12.48253 -12.11483 -11.90776 -11.80454 -11.66654 -11.64992 -11.32018 -11.25142 -10.76329 -10.13742 -9.28474 -8.27174 -6.31627 -0.28395 0.30102 1.37388 1.40679 1.47737 1.51694 1.71241 2.30565 2.37546 2.74237 3.09157 3.70487 3.78111 3.85249 4.00409 4.13687 4.21090 4.32737 4.35661 4.36037 4.42105 4.54157 4.71383 4.81469 4.92500 4.98322 5.02106 5.09691 5.21335 5.22762 5.26197 5.36192 5.38510 5.61206 5.66705 6.24725 6.52700 6.67921 6.75113 7.31425 8.89951 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.034779 B = 0.003901 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.891235 B = 7175.433743 C = 7437.950641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.520 3.480 4 O -0.542 6.542 5 C -0.196 4.196 6 C -0.012 4.012 7 C -0.184 4.184 8 C 0.166 3.834 9 O -0.312 6.312 10 C 0.091 3.909 11 H 0.070 0.930 12 C -0.171 4.171 13 C -0.012 4.012 14 C -0.524 4.524 15 H 0.026 0.974 16 C 0.002 3.998 17 N -0.953 5.953 18 Si 0.952 3.048 19 H -0.261 1.261 20 H -0.289 1.289 21 H -0.244 1.244 22 C -0.231 4.231 23 C -0.008 4.008 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.135 0.865 27 H 0.149 0.851 28 H 0.141 0.859 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.027 0.973 33 H 0.055 0.945 34 H 0.265 0.735 35 H 0.153 0.847 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.179 -7.066 12.624 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.367 3.633 4 O -0.434 6.434 5 C -0.198 4.198 6 C -0.030 4.030 7 C -0.203 4.203 8 C 0.118 3.882 9 O -0.225 6.225 10 C 0.035 3.965 11 H 0.088 0.912 12 C -0.228 4.228 13 C -0.049 4.049 14 C -0.562 4.562 15 H 0.044 0.956 16 C -0.195 4.195 17 N -0.594 5.594 18 Si 0.775 3.225 19 H -0.185 1.185 20 H -0.215 1.215 21 H -0.167 1.167 22 C -0.250 4.250 23 C -0.026 4.026 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.153 0.847 27 H 0.167 0.833 28 H 0.158 0.842 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.171 0.829 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -14.174 -6.586 12.502 20.014 hybrid contribution 0.555 0.350 -0.503 0.827 sum -13.619 -6.236 11.998 19.192 Atomic orbital electron populations 1.23592 0.74282 1.05912 1.02606 1.86536 1.25259 1.31576 1.83968 1.21121 0.89019 0.81491 0.71633 1.90799 1.67398 1.36956 1.48276 1.19020 0.89064 0.95315 1.16393 1.21079 0.92921 0.97408 0.91607 1.20540 0.93037 0.97701 1.08978 1.19851 0.83504 0.95053 0.89808 1.86168 1.15082 1.35973 1.85269 1.22634 0.93021 0.83214 0.97599 0.91202 1.22375 1.03480 1.01890 0.95025 1.19718 0.92932 0.97997 0.94262 1.21308 0.93126 1.43381 0.98418 0.95569 1.26044 1.04181 0.94264 0.94989 1.70084 1.31379 1.46694 1.11242 0.85639 0.78141 0.78634 0.80111 1.18525 1.21506 1.16696 1.21540 0.95994 0.97229 1.10200 1.21418 0.92340 0.98602 0.90191 0.91727 0.92069 0.84664 0.83340 0.84155 0.91736 0.90808 0.88988 0.95476 0.92740 0.92588 0.82904 0.81817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.57 113.37 1.20 1.62 16 2 O -0.36 -7.75 9.81 -56.59 -0.56 -8.31 16 3 C 0.52 14.00 7.89 70.26 0.55 14.55 16 4 O -0.54 -16.97 16.13 19.83 0.32 -16.65 16 5 C -0.20 -5.37 5.87 -20.09 -0.12 -5.48 16 6 C -0.01 -0.34 9.59 22.52 0.22 -0.12 16 7 C -0.18 -5.81 9.97 22.32 0.22 -5.59 16 8 C 0.17 5.65 6.61 22.64 0.15 5.80 16 9 O -0.31 -12.44 9.54 -90.13 -0.86 -13.30 16 10 C 0.09 3.30 2.17 30.59 0.07 3.37 16 11 H 0.07 2.52 6.30 -2.38 -0.02 2.50 16 12 C -0.17 -4.48 9.16 71.98 0.66 -3.82 16 13 C -0.01 -0.53 3.75 29.84 0.11 -0.42 16 14 C -0.52 -29.83 9.43 25.60 0.24 -29.59 16 15 H 0.03 1.67 7.99 -2.91 -0.02 1.65 16 16 C 0.00 0.09 5.47 84.66 0.46 0.56 16 17 N -0.95 -60.02 13.96 21.45 0.30 -59.72 16 18 Si 0.95 43.11 27.47 68.60 1.88 44.99 16 19 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 20 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.24 -10.11 6.54 99.48 0.65 -9.46 16 22 C -0.23 -6.52 8.21 22.33 0.18 -6.33 16 23 C -0.01 -0.19 9.61 22.51 0.22 0.03 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 26 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.15 3.84 7.64 -2.91 -0.02 3.82 16 28 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 29 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.07 1.66 6.89 -2.39 -0.02 1.64 16 31 H 0.09 2.02 8.14 -2.38 -0.02 2.01 16 32 H 0.03 1.21 7.20 -2.38 -0.02 1.19 16 33 H 0.05 2.20 7.57 -2.39 -0.02 2.18 16 34 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 35 H 0.15 3.81 5.40 -2.91 -0.02 3.80 16 36 H 0.16 3.07 7.60 -2.91 -0.02 3.04 16 Total: -1.00 -71.54 309.62 6.28 -65.26 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 1.02 Total: 13.16 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 4.16 Total: -25.43 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: 0.30 Total: -59.72 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -1.10 Total: -38.26 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.88 Total: 44.99 kcal Total: -71.54 6.28 -65.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179074.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.870 kcal (2) G-P(sol) polarization free energy of solvation -71.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds