Wall clock time and date at job start Mon Mar 30 2020 06:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37698 * 120.04732 * 2 1 4 4 C 1.38998 * 120.09279 * 179.97438 * 3 2 1 5 5 O 1.35689 * 119.90528 * 180.02562 * 4 3 2 6 6 C 1.42909 * 116.99842 * 181.48594 * 5 4 3 7 7 H 1.08998 * 109.46592 * 36.67660 * 6 5 4 8 8 C 1.52991 * 109.47091 * 276.67688 * 6 5 4 9 9 C 1.52998 * 109.46768 * 156.67764 * 6 5 4 10 10 C 1.50704 * 109.47314 * 294.99691 * 9 6 5 11 11 H 1.07997 * 119.99829 * 0.02562 * 10 9 6 12 12 C 1.37874 * 119.99924 * 179.97438 * 10 9 6 13 13 N 1.31516 * 120.00107 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99853 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47200 * 60.00452 * 14 12 10 16 16 H 1.48507 * 109.47366 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47299 * 300.00498 * 14 12 10 18 18 C 1.39040 * 120.18475 * 359.97281 * 4 3 2 19 19 C 1.37650 * 120.09328 * 0.02562 * 18 4 3 20 20 C 1.39777 * 120.04661 * 179.97438 * 2 1 3 21 21 C 1.47466 * 120.09221 * 0.02562 * 20 2 1 22 22 O 1.21511 * 120.00203 * 6.20943 * 21 20 2 23 23 O 1.34745 * 120.00058 * 186.21221 * 21 20 2 24 24 H 1.09000 * 109.47061 * 97.06215 * 1 2 3 25 25 H 1.09002 * 109.47493 * 217.06251 * 1 2 3 26 26 H 1.08996 * 109.47291 * 337.06126 * 1 2 3 27 27 H 1.08000 * 119.95458 * 359.95593 * 3 2 1 28 28 H 1.09002 * 109.47315 * 60.00008 * 8 6 5 29 29 H 1.08996 * 109.47075 * 179.97438 * 8 6 5 30 30 H 1.09001 * 109.47693 * 300.00183 * 8 6 5 31 31 H 1.08995 * 109.47600 * 55.00419 * 9 6 5 32 32 H 1.09003 * 109.46891 * 175.00571 * 9 6 5 33 33 H 0.96998 * 119.99660 * 179.97438 * 13 12 10 34 34 H 1.08000 * 119.95298 * 179.75281 * 18 4 3 35 35 H 1.08008 * 120.04752 * 179.97438 * 19 18 4 36 36 H 0.96699 * 117.00039 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1919 0.0000 4 6 3.5865 1.1930 0.0005 5 8 4.2620 2.3698 0.0011 6 6 5.6890 2.2987 -0.0314 7 1 5.9968 1.4655 -0.6632 8 6 6.2214 2.0870 1.3871 9 6 6.2518 3.6037 -0.5980 10 6 5.8272 3.7513 -2.0364 11 1 5.2166 2.9906 -2.5000 12 6 6.2173 4.8580 -2.7603 13 7 6.9605 5.7846 -2.1956 14 14 5.6904 5.0413 -4.5430 15 1 4.2076 5.0663 -4.6209 16 1 6.2368 6.3080 -5.0930 17 1 6.2083 3.8952 -5.3326 18 6 4.2865 -0.0083 0.0016 19 6 3.6050 -1.2042 0.0017 20 6 2.2069 -1.2099 0.0005 21 6 1.4726 -2.4888 0.0005 22 8 0.2629 -2.4949 -0.1137 23 8 2.1432 -3.6507 0.1273 24 1 -0.3633 -0.1263 -1.0199 25 1 -0.3634 -0.8201 0.6194 26 1 -0.3634 0.9464 0.4005 27 1 1.6565 2.1273 -0.0007 28 1 5.8204 1.1573 1.7908 29 1 7.3098 2.0323 1.3623 30 1 5.9135 2.9201 2.0190 31 1 5.8717 4.4451 -0.0188 32 1 7.3402 3.5851 -0.5407 33 1 7.2353 6.5630 -2.7050 34 1 5.3665 -0.0031 -0.0020 35 1 4.1495 -2.1370 0.0021 36 1 1.6187 -4.4631 0.1222 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829180456.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:19 Heat of formation + Delta-G solvation = -117.903594 kcal Electronic energy + Delta-G solvation = -19504.826573 eV Core-core repulsion = 16339.914504 eV Total energy + Delta-G solvation = -3164.912068 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.61615 -39.60689 -37.46207 -36.12232 -33.62047 -32.42579 -31.81751 -30.06588 -27.66193 -27.09722 -24.09278 -23.23743 -22.35391 -21.44255 -19.55614 -18.13596 -17.60994 -17.03704 -16.43363 -15.78593 -15.61719 -14.74982 -14.56809 -14.46442 -13.84257 -13.40656 -13.35769 -13.19113 -12.71611 -12.52627 -12.14372 -12.02083 -11.85637 -11.79250 -11.54710 -11.45457 -11.14126 -10.81012 -10.76585 -10.50205 -10.19347 -10.07052 -9.47555 -9.20606 -8.77654 -8.43865 -8.00588 -6.07155 -4.09346 0.89360 1.42158 2.62044 3.04411 3.31379 3.35575 3.39052 3.67611 3.84895 4.41735 4.81674 4.87093 5.07275 5.23611 5.30160 5.42410 5.48757 5.58935 5.62914 5.75049 5.78475 5.85466 6.00237 6.06555 6.15193 6.24700 6.40036 6.44689 6.54411 6.59940 6.64877 6.78406 7.39619 7.49347 7.88506 7.88888 7.94926 8.28053 8.93873 9.54684 11.04090 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.024350 B = 0.004578 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.628337 B = 6114.933226 C = 6587.292310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.023 3.977 3 C -0.182 4.182 4 C 0.198 3.802 5 O -0.281 6.281 6 C 0.082 3.918 7 H 0.067 0.933 8 C -0.179 4.179 9 C 0.026 3.974 10 C -0.518 4.518 11 H 0.055 0.945 12 C 0.060 3.940 13 N -0.896 5.896 14 Si 0.893 3.107 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.239 4.239 19 C -0.013 4.013 20 C -0.199 4.199 21 C 0.532 3.468 22 O -0.521 6.521 23 O -0.517 6.517 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.139 0.861 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.030 0.970 32 H 0.041 0.959 33 H 0.262 0.738 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.263 -14.586 6.464 17.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.023 3.977 3 C -0.200 4.200 4 C 0.149 3.851 5 O -0.192 6.192 6 C 0.027 3.973 7 H 0.085 0.915 8 C -0.236 4.236 9 C -0.011 4.011 10 C -0.557 4.557 11 H 0.074 0.926 12 C -0.142 4.142 13 N -0.535 5.535 14 Si 0.721 3.279 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.258 4.258 19 C -0.032 4.032 20 C -0.200 4.200 21 C 0.379 3.621 22 O -0.413 6.413 23 O -0.329 6.329 24 H 0.096 0.904 25 H 0.109 0.891 26 H 0.082 0.918 27 H 0.157 0.843 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.158 0.842 35 H 0.153 0.847 36 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -7.304 -13.820 6.406 16.893 hybrid contribution -0.283 -0.477 -1.054 1.191 sum -7.587 -14.297 5.352 17.047 Atomic orbital electron populations 1.21108 0.89883 1.03106 1.03638 1.19689 0.96382 0.90458 0.91208 1.20271 0.91198 0.98344 1.10233 1.19582 0.92033 0.86071 0.87442 1.86287 1.22354 1.26114 1.84430 1.23024 0.75778 1.03283 0.95205 0.91519 1.22421 1.01790 1.01621 0.97757 1.19275 0.96072 0.89536 0.96189 1.21069 1.32318 1.06212 0.96063 0.92643 1.24966 0.95038 0.95726 0.98458 1.69934 1.36365 1.10270 1.36909 0.86637 0.79103 0.77347 0.84843 1.20129 1.21219 1.20228 1.21372 1.01236 0.91811 1.11381 1.21135 0.92430 0.98127 0.91459 1.18592 0.93403 0.89518 1.18491 1.20857 0.85316 0.84050 0.71892 1.90825 1.15393 1.87653 1.47407 1.84588 1.45487 1.17158 1.85617 0.90410 0.89093 0.91847 0.84293 0.93137 0.91096 0.91760 0.95168 0.94145 0.92799 0.84249 0.84714 0.73314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 8.71 36.01 0.31 -1.21 16 2 C 0.02 0.33 5.91 -104.24 -0.62 -0.28 16 3 C -0.18 -2.86 9.59 -39.50 -0.38 -3.24 16 4 C 0.20 3.41 6.58 -39.00 -0.26 3.16 16 5 O -0.28 -5.66 9.55 -18.77 -0.18 -5.84 16 6 C 0.08 1.61 2.18 -26.74 -0.06 1.55 16 7 H 0.07 1.26 6.20 -51.93 -0.32 0.93 16 8 C -0.18 -2.83 9.17 37.15 0.34 -2.49 16 9 C 0.03 0.64 4.68 -27.88 -0.13 0.51 16 10 C -0.52 -14.28 8.88 -34.44 -0.31 -14.58 16 11 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 13 N -0.90 -26.21 13.29 55.43 0.74 -25.47 16 14 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 18 C -0.24 -3.60 8.19 -39.50 -0.32 -3.92 16 19 C -0.01 -0.18 9.60 -39.21 -0.38 -0.55 16 20 C -0.20 -2.78 5.87 -104.97 -0.62 -3.40 16 21 C 0.53 6.83 8.19 34.49 0.28 7.11 16 22 O -0.52 -7.53 14.13 -19.28 -0.27 -7.80 16 23 O -0.52 -4.97 12.69 -40.61 -0.52 -5.48 16 24 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.09 1.18 5.89 -51.93 -0.31 0.87 16 26 H 0.06 0.69 8.03 -51.93 -0.42 0.27 16 27 H 0.14 2.06 8.05 -52.49 -0.42 1.64 16 28 H 0.05 0.70 7.00 -51.93 -0.36 0.34 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.14 1.96 5.49 -52.49 -0.29 1.67 16 35 H 0.14 1.49 7.62 -52.48 -0.40 1.09 16 36 H 0.41 1.98 9.11 45.56 0.42 2.39 16 LS Contribution 307.69 15.07 4.64 4.64 Total: -1.00 -31.40 307.69 -6.60 -37.99 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -3.76 Total: 1.22 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -2.22 Total: -15.76 kcal Atomic # 7 Polarization: -26.21 SS G_CDS: 0.74 Total: -25.47 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.97 Total: -19.12 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.40 -6.60 -37.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829180456.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.911 kcal (2) G-P(sol) polarization free energy of solvation -31.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds