Wall clock time and date at job start Mon Mar 30 2020 06:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37698 * 120.04732 * 2 1 4 4 C 1.38998 * 120.09279 * 179.97438 * 3 2 1 5 5 O 1.35689 * 119.90528 * 180.02562 * 4 3 2 6 6 C 1.42909 * 116.99842 * 181.48594 * 5 4 3 7 7 H 1.08998 * 109.46592 * 36.67660 * 6 5 4 8 8 C 1.52991 * 109.47091 * 276.67688 * 6 5 4 9 9 C 1.52998 * 109.46768 * 156.67764 * 6 5 4 10 10 C 1.50704 * 109.47314 * 294.99691 * 9 6 5 11 11 H 1.07997 * 119.99829 * 0.02562 * 10 9 6 12 12 C 1.37874 * 119.99924 * 179.97438 * 10 9 6 13 13 N 1.31516 * 120.00107 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99853 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47200 * 60.00452 * 14 12 10 16 16 H 1.48507 * 109.47366 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47299 * 300.00498 * 14 12 10 18 18 C 1.39040 * 120.18475 * 359.97281 * 4 3 2 19 19 C 1.37650 * 120.09328 * 0.02562 * 18 4 3 20 20 C 1.39777 * 120.04661 * 179.97438 * 2 1 3 21 21 C 1.47466 * 120.09221 * 0.02562 * 20 2 1 22 22 O 1.21511 * 120.00203 * 6.20943 * 21 20 2 23 23 O 1.34745 * 120.00058 * 186.21221 * 21 20 2 24 24 H 1.09000 * 109.47061 * 97.06215 * 1 2 3 25 25 H 1.09002 * 109.47493 * 217.06251 * 1 2 3 26 26 H 1.08996 * 109.47291 * 337.06126 * 1 2 3 27 27 H 1.08000 * 119.95458 * 359.95593 * 3 2 1 28 28 H 1.09002 * 109.47315 * 60.00008 * 8 6 5 29 29 H 1.08996 * 109.47075 * 179.97438 * 8 6 5 30 30 H 1.09001 * 109.47693 * 300.00183 * 8 6 5 31 31 H 1.08995 * 109.47600 * 55.00419 * 9 6 5 32 32 H 1.09003 * 109.46891 * 175.00571 * 9 6 5 33 33 H 0.96998 * 119.99660 * 179.97438 * 13 12 10 34 34 H 1.08000 * 119.95298 * 179.75281 * 18 4 3 35 35 H 1.08008 * 120.04752 * 179.97438 * 19 18 4 36 36 H 0.96699 * 117.00039 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1919 0.0000 4 6 3.5865 1.1930 0.0005 5 8 4.2620 2.3698 0.0011 6 6 5.6890 2.2987 -0.0314 7 1 5.9968 1.4655 -0.6632 8 6 6.2214 2.0870 1.3871 9 6 6.2518 3.6037 -0.5980 10 6 5.8272 3.7513 -2.0364 11 1 5.2166 2.9906 -2.5000 12 6 6.2173 4.8580 -2.7603 13 7 6.9605 5.7846 -2.1956 14 14 5.6904 5.0413 -4.5430 15 1 4.2076 5.0663 -4.6209 16 1 6.2368 6.3080 -5.0930 17 1 6.2083 3.8952 -5.3326 18 6 4.2865 -0.0083 0.0016 19 6 3.6050 -1.2042 0.0017 20 6 2.2069 -1.2099 0.0005 21 6 1.4726 -2.4888 0.0005 22 8 0.2629 -2.4949 -0.1137 23 8 2.1432 -3.6507 0.1273 24 1 -0.3633 -0.1263 -1.0199 25 1 -0.3634 -0.8201 0.6194 26 1 -0.3634 0.9464 0.4005 27 1 1.6565 2.1273 -0.0007 28 1 5.8204 1.1573 1.7908 29 1 7.3098 2.0323 1.3623 30 1 5.9135 2.9201 2.0190 31 1 5.8717 4.4451 -0.0188 32 1 7.3402 3.5851 -0.5407 33 1 7.2353 6.5630 -2.7050 34 1 5.3665 -0.0031 -0.0020 35 1 4.1495 -2.1370 0.0021 36 1 1.6187 -4.4631 0.1222 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829180456.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:19 Heat of formation + Delta-G solvation = -137.066730 kcal Electronic energy + Delta-G solvation = -19505.657549 eV Core-core repulsion = 16339.914504 eV Total energy + Delta-G solvation = -3165.743044 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.71159 -40.79666 -38.67406 -37.05125 -35.50621 -33.58981 -33.47739 -31.28687 -29.44190 -28.21261 -25.54258 -24.75131 -23.56238 -22.71503 -20.90179 -19.12105 -18.89862 -18.49912 -18.09519 -17.07074 -16.70454 -16.40704 -16.10419 -15.61186 -15.03797 -14.77435 -14.47511 -14.34209 -14.08527 -13.84416 -13.59251 -13.46409 -13.29572 -13.17403 -12.97170 -12.65554 -12.59999 -12.44406 -12.34513 -11.97940 -11.72314 -11.28999 -11.19679 -11.08710 -10.58650 -9.89633 -9.26157 -8.21567 -6.30587 -0.23158 0.29328 1.38975 1.41078 1.48947 1.56172 2.14641 2.32902 2.39889 2.71304 3.13382 3.74036 3.77487 3.93642 4.10623 4.19324 4.22144 4.30922 4.47569 4.48740 4.76207 4.77721 4.79591 4.92304 5.02028 5.09534 5.14452 5.21343 5.31458 5.36929 5.47103 5.48720 5.65460 5.73844 5.76193 6.17192 6.56154 6.81230 7.06034 7.37293 8.89812 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.024350 B = 0.004578 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.628337 B = 6114.933226 C = 6587.292310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.018 3.982 3 C -0.191 4.191 4 C 0.169 3.831 5 O -0.312 6.312 6 C 0.090 3.910 7 H 0.074 0.926 8 C -0.169 4.169 9 C 0.028 3.972 10 C -0.533 4.533 11 H 0.052 0.948 12 C 0.006 3.994 13 N -0.930 5.930 14 Si 0.956 3.044 15 H -0.274 1.274 16 H -0.281 1.281 17 H -0.266 1.266 18 C -0.240 4.240 19 C -0.004 4.004 20 C -0.203 4.203 21 C 0.538 3.462 22 O -0.539 6.539 23 O -0.506 6.506 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.138 0.862 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.056 0.944 31 H -0.001 1.001 32 H 0.028 0.972 33 H 0.264 0.736 34 H 0.149 0.851 35 H 0.164 0.836 36 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.784 -16.856 6.182 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.018 3.982 3 C -0.210 4.210 4 C 0.121 3.879 5 O -0.224 6.224 6 C 0.035 3.965 7 H 0.092 0.908 8 C -0.226 4.226 9 C -0.009 4.009 10 C -0.571 4.571 11 H 0.070 0.930 12 C -0.192 4.192 13 N -0.570 5.570 14 Si 0.781 3.219 15 H -0.199 1.199 16 H -0.206 1.206 17 H -0.191 1.191 18 C -0.259 4.259 19 C -0.022 4.022 20 C -0.204 4.204 21 C 0.385 3.615 22 O -0.432 6.432 23 O -0.320 6.320 24 H 0.097 0.903 25 H 0.107 0.893 26 H 0.095 0.905 27 H 0.156 0.844 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.018 0.982 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.167 0.833 35 H 0.181 0.819 36 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -7.831 -16.137 6.132 18.956 hybrid contribution -0.184 0.107 -0.937 0.961 sum -8.015 -16.029 5.196 18.660 Atomic orbital electron populations 1.21097 0.88668 1.03806 1.03700 1.19900 0.97305 0.90262 0.90741 1.20384 0.90947 0.99040 1.10622 1.19826 0.92517 0.85906 0.89624 1.86197 1.22299 1.28156 1.85741 1.22733 0.76153 1.00342 0.97289 0.90804 1.22327 1.02550 1.02514 0.95193 1.19125 0.95473 0.91435 0.94870 1.21441 1.31954 1.06159 0.97591 0.92986 1.25812 0.95099 0.95484 1.02779 1.70049 1.37537 1.10835 1.38568 0.85631 0.78642 0.77744 0.79849 1.19908 1.20572 1.19094 1.21496 1.01727 0.91526 1.11118 1.21399 0.92258 0.98592 0.89970 1.18881 0.93962 0.90216 1.17366 1.20579 0.84837 0.84515 0.71525 1.90829 1.16130 1.88070 1.48218 1.84522 1.45430 1.17323 1.84754 0.90317 0.89274 0.90505 0.84371 0.90707 0.89748 0.92488 0.98226 0.95346 0.92670 0.83330 0.81875 0.70619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.77 8.71 71.24 0.62 -2.15 16 2 C 0.02 0.51 5.91 -19.62 -0.12 0.39 16 3 C -0.19 -5.97 9.59 22.32 0.21 -5.75 16 4 C 0.17 5.77 6.58 22.64 0.15 5.92 16 5 O -0.31 -12.76 9.55 -90.08 -0.86 -13.62 16 6 C 0.09 3.54 2.18 30.59 0.07 3.61 16 7 H 0.07 2.75 6.20 -2.39 -0.01 2.73 16 8 C -0.17 -5.20 9.17 71.98 0.66 -4.54 16 9 C 0.03 1.41 4.68 29.85 0.14 1.55 16 10 C -0.53 -29.95 8.88 25.60 0.23 -29.73 16 11 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16 12 C 0.01 0.37 5.46 84.65 0.46 0.83 16 13 N -0.93 -55.50 13.29 21.45 0.28 -55.21 16 14 Si 0.96 44.36 29.54 68.60 2.03 46.39 16 15 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 18 C -0.24 -6.80 8.19 22.32 0.18 -6.62 16 19 C 0.00 -0.10 9.60 22.51 0.22 0.12 16 20 C -0.20 -5.23 5.87 -20.09 -0.12 -5.35 16 21 C 0.54 12.33 8.19 70.25 0.58 12.90 16 22 O -0.54 -14.35 14.13 19.80 0.28 -14.07 16 23 O -0.51 -7.84 12.69 -56.55 -0.72 -8.56 16 24 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.09 2.18 5.89 -2.39 -0.01 2.16 16 26 H 0.08 1.58 8.03 -2.39 -0.02 1.56 16 27 H 0.14 4.17 8.05 -2.91 -0.02 4.15 16 28 H 0.07 1.93 7.00 -2.39 -0.02 1.92 16 29 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 34 H 0.15 3.86 5.49 -2.91 -0.02 3.84 16 35 H 0.16 2.96 7.62 -2.91 -0.02 2.93 16 36 H 0.43 2.51 9.11 -74.06 -0.67 1.84 16 Total: -1.00 -67.95 307.69 4.72 -63.23 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 0.43 Total: 10.65 kcal Atomic # 6 Polarization: -32.10 SS G_CDS: 3.28 Total: -28.82 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 0.28 Total: -55.21 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -1.30 Total: -36.24 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -67.95 4.72 -63.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829180456.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.836 kcal (2) G-P(sol) polarization free energy of solvation -67.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds