Wall clock time and date at job start Mon Mar 30 2020 06:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38568 * 119.79853 * 2 1 4 4 C 1.37763 * 120.30632 * 180.02562 * 3 2 1 5 5 C 1.39772 * 119.90372 * 359.76969 * 4 3 2 6 6 C 1.47400 * 120.19732 * 180.25386 * 5 4 3 7 7 O 1.21512 * 119.99686 * 180.25700 * 6 5 4 8 8 O 1.34743 * 120.00026 * 0.25200 * 6 5 4 9 9 C 1.40200 * 119.60168 * 0.50603 * 5 4 3 10 10 O 1.35636 * 120.15103 * 179.74852 * 9 5 4 11 11 C 1.42901 * 117.00231 * 174.23735 * 10 9 5 12 12 H 1.09003 * 109.46812 * 324.95665 * 11 10 9 13 13 C 1.52998 * 109.47066 * 84.95056 * 11 10 9 14 14 C 1.52998 * 109.47359 * 204.95463 * 11 10 9 15 15 C 1.50702 * 109.47210 * 65.00077 * 14 11 10 16 16 H 1.07999 * 119.99603 * 359.97438 * 15 14 11 17 17 C 1.37872 * 119.99993 * 180.02562 * 15 14 11 18 18 N 1.31520 * 119.99935 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00083 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46941 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47434 * 119.99751 * 19 17 15 22 22 H 1.48507 * 109.46969 * 239.99581 * 19 17 15 23 23 C 1.38049 * 119.79810 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.47095 * 269.97458 * 1 2 3 25 25 H 1.09007 * 109.47042 * 29.97170 * 1 2 3 26 26 H 1.08998 * 109.47162 * 149.97532 * 1 2 3 27 27 H 1.07993 * 119.84238 * 0.03074 * 3 2 1 28 28 H 1.08000 * 120.04636 * 180.02562 * 4 3 2 29 29 H 0.96698 * 117.00338 * 180.02562 * 8 6 5 30 30 H 1.08998 * 109.47457 * 300.00535 * 13 11 10 31 31 H 1.09003 * 109.46808 * 60.00606 * 13 11 10 32 32 H 1.09007 * 109.46995 * 180.02562 * 13 11 10 33 33 H 1.08996 * 109.47439 * 304.99558 * 14 11 10 34 34 H 1.08998 * 109.47202 * 184.99666 * 14 11 10 35 35 H 0.97001 * 119.99768 * 180.02562 * 18 17 15 36 36 H 1.08002 * 119.95318 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2025 0.0000 4 6 3.5732 1.2147 -0.0005 5 6 4.2807 0.0093 0.0038 6 6 5.7547 0.0148 0.0089 7 8 6.3662 -1.0353 0.0079 8 8 6.4240 1.1842 0.0145 9 6 3.5800 -1.2051 -0.0021 10 8 4.2554 -2.3813 -0.0031 11 6 3.4795 -3.5751 0.1186 12 1 2.6285 -3.3900 0.7742 13 6 2.9763 -3.9994 -1.2626 14 6 4.3461 -4.6887 0.7099 15 6 4.7405 -4.3243 2.1180 16 1 4.4067 -3.3915 2.5479 17 6 5.5282 -5.1812 2.8570 18 7 5.9351 -6.3169 2.3331 19 14 6.0165 -4.7298 4.6026 20 1 5.4339 -3.4098 4.9539 21 1 5.5076 -5.7616 5.5415 22 1 7.4967 -4.6589 4.7000 23 6 2.1930 -1.1980 -0.0005 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8903 -0.5134 26 1 -0.3633 -0.8897 -0.5142 27 1 1.6498 2.1343 0.0005 28 1 4.1056 2.1543 -0.0001 29 1 7.3899 1.1373 0.0174 30 1 2.3589 -3.2060 -1.6839 31 1 3.8273 -4.1845 -1.9182 32 1 2.3840 -4.9098 -1.1697 33 1 5.2424 -4.8131 0.1022 34 1 3.7821 -5.6213 0.7205 35 1 6.4890 -6.9199 2.8532 36 1 1.6490 -2.1309 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829181741.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:29 Heat of formation + Delta-G solvation = -117.523810 kcal Electronic energy + Delta-G solvation = -20076.884237 eV Core-core repulsion = 16911.988637 eV Total energy + Delta-G solvation = -3164.895600 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.40508 -39.07263 -37.51382 -35.59524 -33.60669 -32.70220 -31.43649 -29.72783 -27.73713 -27.37770 -23.65584 -22.99217 -22.65514 -20.69460 -20.01436 -17.90878 -17.33085 -16.46654 -16.34393 -15.53710 -15.29196 -14.54578 -14.47148 -14.36756 -14.20312 -13.59028 -13.36444 -12.95425 -12.65504 -12.32495 -12.01432 -11.88020 -11.79435 -11.52282 -11.37167 -11.15205 -11.06359 -10.84728 -10.72914 -10.40009 -10.12122 -9.92019 -9.38087 -9.07639 -8.77651 -8.33908 -7.89813 -5.96888 -3.97124 0.92858 1.60606 2.90946 3.34889 3.35201 3.42165 3.47540 3.75207 3.96263 4.50736 4.76518 4.85960 5.16053 5.18817 5.40725 5.49449 5.50396 5.52910 5.63910 5.69247 5.73267 5.76544 5.94801 6.04944 6.14817 6.31622 6.40783 6.56248 6.60542 6.73837 6.83961 6.86419 7.48796 7.62776 7.99386 8.06828 8.35127 8.40265 9.05252 9.65559 11.14900 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.016599 B = 0.006682 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.407797 B = 4189.339343 C = 4838.206445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.013 4.013 3 C -0.191 4.191 4 C -0.022 4.022 5 C -0.183 4.183 6 C 0.515 3.485 7 O -0.476 6.476 8 O -0.526 6.526 9 C 0.216 3.784 10 O -0.256 6.256 11 C 0.079 3.921 12 H 0.064 0.936 13 C -0.178 4.178 14 C 0.027 3.973 15 C -0.508 4.508 16 H 0.054 0.946 17 C 0.058 3.942 18 N -0.897 5.897 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.232 4.232 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.126 0.874 28 H 0.138 0.862 29 H 0.408 0.592 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.031 0.969 34 H 0.039 0.961 35 H 0.260 0.740 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.779 14.642 -6.444 18.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.013 4.013 3 C -0.210 4.210 4 C -0.040 4.040 5 C -0.185 4.185 6 C 0.358 3.642 7 O -0.362 6.362 8 O -0.339 6.339 9 C 0.165 3.835 10 O -0.165 6.165 11 C 0.024 3.976 12 H 0.082 0.918 13 C -0.235 4.235 14 C -0.010 4.010 15 C -0.547 4.547 16 H 0.072 0.928 17 C -0.143 4.143 18 N -0.537 5.537 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.209 1.209 23 C -0.250 4.250 24 H 0.095 0.905 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.143 0.857 28 H 0.156 0.844 29 H 0.266 0.734 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.716 14.112 -6.422 17.786 hybrid contribution 0.827 0.065 1.017 1.312 sum -7.890 14.176 -5.405 17.101 Atomic orbital electron populations 1.20892 0.90959 1.02973 1.02778 1.19929 0.96076 0.92542 0.92732 1.20761 0.93784 0.97479 1.08949 1.21187 0.93968 0.96476 0.92361 1.18335 0.89331 0.92246 1.18568 1.20628 0.88600 0.81086 0.73871 1.91058 1.69253 1.32270 1.43634 1.84513 1.26394 1.35886 1.87062 1.19217 0.90255 0.86759 0.87272 1.86523 1.35440 1.11467 1.83066 1.23048 0.95316 0.84137 0.95124 0.91775 1.22422 1.01554 1.01339 0.98178 1.19260 0.95147 0.90507 0.96080 1.21106 1.31327 1.04317 0.97900 0.92754 1.24950 0.95947 0.95039 0.98368 1.69959 1.36395 1.10263 1.37063 0.86534 0.78428 0.78362 0.84714 1.19810 1.21053 1.20950 1.21217 0.92699 0.99354 1.11740 0.90540 0.91227 0.91202 0.85652 0.84445 0.73405 0.93291 0.91726 0.91164 0.95040 0.94283 0.93058 0.84249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 10.00 36.01 0.36 -0.73 16 2 C -0.01 -0.16 5.88 -104.57 -0.62 -0.77 16 3 C -0.19 -2.30 9.67 -39.63 -0.38 -2.68 16 4 C -0.02 -0.29 9.61 -39.18 -0.38 -0.67 16 5 C -0.18 -3.19 5.89 -104.86 -0.62 -3.81 16 6 C 0.52 9.44 8.26 34.46 0.28 9.73 16 7 O -0.48 -10.94 15.95 -26.60 -0.42 -11.36 16 8 O -0.53 -7.09 12.68 -40.61 -0.51 -7.60 16 9 C 0.22 4.09 6.61 -38.67 -0.26 3.83 16 10 O -0.26 -5.78 7.63 -40.49 -0.31 -6.09 16 11 C 0.08 1.68 2.17 -26.73 -0.06 1.62 16 12 H 0.06 1.29 6.31 -51.93 -0.33 0.96 16 13 C -0.18 -3.04 9.17 37.16 0.34 -2.70 16 14 C 0.03 0.71 4.68 -27.88 -0.13 0.58 16 15 C -0.51 -14.92 8.88 -34.44 -0.31 -15.23 16 16 H 0.05 1.60 7.74 -52.49 -0.41 1.20 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 18 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 19 Si 0.89 22.71 29.54 -169.99 -5.02 17.69 16 20 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 23 C -0.23 -3.62 7.88 -39.48 -0.31 -3.93 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 26 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 27 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 28 H 0.14 1.53 7.61 -52.49 -0.40 1.13 16 29 H 0.41 3.75 9.11 45.56 0.42 4.17 16 30 H 0.05 0.73 6.91 -51.93 -0.36 0.37 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.07 1.09 8.14 -51.92 -0.42 0.66 16 33 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 36 H 0.14 2.05 5.43 -52.49 -0.28 1.77 16 LS Contribution 310.92 15.07 4.69 4.69 Total: -1.00 -35.21 310.92 -6.88 -42.09 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -3.87 Total: 0.55 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -2.16 Total: -13.14 kcal Atomic # 7 Polarization: -27.55 SS G_CDS: 0.74 Total: -26.81 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -1.25 Total: -25.06 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -35.21 -6.88 -42.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829181741.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.430 kcal (2) G-P(sol) polarization free energy of solvation -35.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds