Wall clock time and date at job start Mon Mar 30 2020 06:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38568 * 119.79853 * 2 1 4 4 C 1.37763 * 120.30632 * 180.02562 * 3 2 1 5 5 C 1.39772 * 119.90372 * 359.76969 * 4 3 2 6 6 C 1.47400 * 120.19732 * 180.25386 * 5 4 3 7 7 O 1.21512 * 119.99686 * 180.25700 * 6 5 4 8 8 O 1.34743 * 120.00026 * 0.25200 * 6 5 4 9 9 C 1.40200 * 119.60168 * 0.50603 * 5 4 3 10 10 O 1.35636 * 120.15103 * 179.74852 * 9 5 4 11 11 C 1.42901 * 117.00231 * 174.23735 * 10 9 5 12 12 H 1.09003 * 109.46812 * 324.95665 * 11 10 9 13 13 C 1.52998 * 109.47066 * 84.95056 * 11 10 9 14 14 C 1.52998 * 109.47359 * 204.95463 * 11 10 9 15 15 C 1.50702 * 109.47210 * 65.00077 * 14 11 10 16 16 H 1.07999 * 119.99603 * 359.97438 * 15 14 11 17 17 C 1.37872 * 119.99993 * 180.02562 * 15 14 11 18 18 N 1.31520 * 119.99935 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00083 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46941 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47434 * 119.99751 * 19 17 15 22 22 H 1.48507 * 109.46969 * 239.99581 * 19 17 15 23 23 C 1.38049 * 119.79810 * 180.02562 * 2 1 3 24 24 H 1.09004 * 109.47095 * 269.97458 * 1 2 3 25 25 H 1.09007 * 109.47042 * 29.97170 * 1 2 3 26 26 H 1.08998 * 109.47162 * 149.97532 * 1 2 3 27 27 H 1.07993 * 119.84238 * 0.03074 * 3 2 1 28 28 H 1.08000 * 120.04636 * 180.02562 * 4 3 2 29 29 H 0.96698 * 117.00338 * 180.02562 * 8 6 5 30 30 H 1.08998 * 109.47457 * 300.00535 * 13 11 10 31 31 H 1.09003 * 109.46808 * 60.00606 * 13 11 10 32 32 H 1.09007 * 109.46995 * 180.02562 * 13 11 10 33 33 H 1.08996 * 109.47439 * 304.99558 * 14 11 10 34 34 H 1.08998 * 109.47202 * 184.99666 * 14 11 10 35 35 H 0.97001 * 119.99768 * 180.02562 * 18 17 15 36 36 H 1.08002 * 119.95318 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2025 0.0000 4 6 3.5732 1.2147 -0.0005 5 6 4.2807 0.0093 0.0038 6 6 5.7547 0.0148 0.0089 7 8 6.3662 -1.0353 0.0079 8 8 6.4240 1.1842 0.0145 9 6 3.5800 -1.2051 -0.0021 10 8 4.2554 -2.3813 -0.0031 11 6 3.4795 -3.5751 0.1186 12 1 2.6285 -3.3900 0.7742 13 6 2.9763 -3.9994 -1.2626 14 6 4.3461 -4.6887 0.7099 15 6 4.7405 -4.3243 2.1180 16 1 4.4067 -3.3915 2.5479 17 6 5.5282 -5.1812 2.8570 18 7 5.9351 -6.3169 2.3331 19 14 6.0165 -4.7298 4.6026 20 1 5.4339 -3.4098 4.9539 21 1 5.5076 -5.7616 5.5415 22 1 7.4967 -4.6589 4.7000 23 6 2.1930 -1.1980 -0.0005 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8903 -0.5134 26 1 -0.3633 -0.8897 -0.5142 27 1 1.6498 2.1343 0.0005 28 1 4.1056 2.1543 -0.0001 29 1 7.3899 1.1373 0.0174 30 1 2.3589 -3.2060 -1.6839 31 1 3.8273 -4.1845 -1.9182 32 1 2.3840 -4.9098 -1.1697 33 1 5.2424 -4.8131 0.1022 34 1 3.7821 -5.6213 0.7205 35 1 6.4890 -6.9199 2.8532 36 1 1.6490 -2.1309 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829181741.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:28 Heat of formation + Delta-G solvation = -140.659526 kcal Electronic energy + Delta-G solvation = -20077.887476 eV Core-core repulsion = 16911.988637 eV Total energy + Delta-G solvation = -3165.898839 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.71626 -40.46127 -38.80129 -36.94150 -35.53753 -34.05349 -33.10121 -30.92473 -29.44052 -28.62364 -25.44210 -24.37707 -23.96673 -21.90365 -21.60635 -19.20132 -18.71878 -18.56498 -17.78983 -16.92727 -16.70760 -16.39790 -15.94619 -15.57636 -15.32356 -14.85497 -14.57357 -14.25773 -14.11933 -13.79844 -13.52215 -13.45832 -13.18055 -12.92926 -12.72997 -12.65451 -12.55431 -12.44646 -12.32040 -12.05727 -11.76180 -11.51343 -11.27441 -11.09022 -10.62342 -9.88369 -9.16322 -8.24588 -6.32734 -0.24635 0.45947 1.31271 1.34010 1.46095 1.62040 2.14813 2.34749 2.36490 2.78514 3.09865 3.76644 3.82639 3.97712 4.13343 4.18310 4.21749 4.37338 4.43594 4.60615 4.72046 4.80146 4.84127 4.88741 4.99383 5.14043 5.24370 5.25907 5.29218 5.36543 5.44986 5.57460 5.66258 5.72238 5.86846 6.14989 6.60479 6.77762 7.09403 7.33875 8.87811 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.016599 B = 0.006682 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.407797 B = 4189.339343 C = 4838.206445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.004 4.004 3 C -0.177 4.177 4 C -0.014 4.014 5 C -0.213 4.213 6 C 0.518 3.482 7 O -0.540 6.540 8 O -0.505 6.505 9 C 0.176 3.824 10 O -0.296 6.296 11 C 0.086 3.914 12 H 0.072 0.928 13 C -0.166 4.166 14 C 0.030 3.970 15 C -0.526 4.526 16 H 0.045 0.955 17 C 0.002 3.998 18 N -0.931 5.931 19 Si 0.959 3.041 20 H -0.270 1.270 21 H -0.266 1.266 22 H -0.281 1.281 23 C -0.242 4.242 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.075 0.925 27 H 0.170 0.830 28 H 0.165 0.835 29 H 0.427 0.573 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.086 0.914 33 H -0.009 1.009 34 H 0.030 0.970 35 H 0.264 0.736 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.157 17.548 -5.992 21.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.004 4.004 3 C -0.194 4.194 4 C -0.032 4.032 5 C -0.215 4.215 6 C 0.364 3.636 7 O -0.431 6.431 8 O -0.319 6.319 9 C 0.127 3.873 10 O -0.208 6.208 11 C 0.031 3.969 12 H 0.090 0.910 13 C -0.223 4.223 14 C -0.007 4.007 15 C -0.564 4.564 16 H 0.064 0.936 17 C -0.196 4.196 18 N -0.571 5.571 19 Si 0.783 3.217 20 H -0.194 1.194 21 H -0.191 1.191 22 H -0.207 1.207 23 C -0.260 4.260 24 H 0.106 0.894 25 H 0.115 0.885 26 H 0.094 0.906 27 H 0.187 0.813 28 H 0.182 0.818 29 H 0.288 0.712 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.009 0.991 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.104 17.067 -5.977 21.221 hybrid contribution 1.522 -0.654 0.842 1.858 sum -9.583 16.413 -5.135 19.687 Atomic orbital electron populations 1.21006 0.87879 1.04686 1.03934 1.20430 0.98212 0.91625 0.90140 1.21301 0.93200 0.98937 1.05994 1.21528 0.94890 0.95801 0.90952 1.18647 0.89045 0.93357 1.20452 1.20983 0.89368 0.81051 0.72210 1.91032 1.70546 1.34536 1.46964 1.84457 1.28069 1.33363 1.86022 1.19653 0.91852 0.85851 0.89919 1.86430 1.36962 1.12720 1.84643 1.22740 0.93926 0.83018 0.97211 0.90970 1.22311 1.01486 1.02929 0.95559 1.19093 0.94339 0.92538 0.94711 1.21416 1.31665 1.03943 0.99382 0.93628 1.25858 0.95862 0.94954 1.02884 1.70072 1.37002 1.11237 1.38834 0.85494 0.78009 0.78526 0.79623 1.19436 1.19127 1.20657 1.21363 0.91358 1.01001 1.12324 0.89398 0.88514 0.90637 0.81293 0.81790 0.71223 0.90558 0.93078 0.89487 0.99082 0.95184 0.92671 0.83957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 10.00 71.24 0.71 -0.89 16 2 C 0.00 -0.08 5.88 -19.83 -0.12 -0.20 16 3 C -0.18 -3.43 9.67 22.24 0.22 -3.21 16 4 C -0.01 -0.33 9.61 22.53 0.22 -0.12 16 5 C -0.21 -7.39 5.89 -20.02 -0.12 -7.51 16 6 C 0.52 19.44 8.26 70.23 0.58 20.02 16 7 O -0.54 -26.36 15.95 26.80 0.43 -25.93 16 8 O -0.51 -13.16 12.68 -56.54 -0.72 -13.87 16 9 C 0.18 6.79 6.61 22.86 0.15 6.94 16 10 O -0.30 -14.14 7.63 -68.57 -0.52 -14.66 16 11 C 0.09 3.84 2.17 30.59 0.07 3.90 16 12 H 0.07 3.00 6.31 -2.39 -0.02 2.98 16 13 C -0.17 -5.77 9.17 71.98 0.66 -5.11 16 14 C 0.03 1.69 4.68 29.85 0.14 1.83 16 15 C -0.53 -32.26 8.88 25.60 0.23 -32.04 16 16 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 17 C 0.00 0.12 5.46 84.65 0.46 0.58 16 18 N -0.93 -59.07 13.29 21.45 0.28 -58.79 16 19 Si 0.96 47.54 29.54 68.60 2.03 49.57 16 20 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 23 C -0.24 -7.26 7.88 22.34 0.18 -7.08 16 24 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 25 H 0.10 0.84 8.08 -2.38 -0.02 0.82 16 26 H 0.07 0.98 8.08 -2.39 -0.02 0.96 16 27 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 28 H 0.16 3.00 7.61 -2.91 -0.02 2.97 16 29 H 0.43 7.53 9.11 -74.06 -0.67 6.85 16 30 H 0.08 2.21 6.91 -2.39 -0.02 2.19 16 31 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.09 2.68 8.14 -2.38 -0.02 2.66 16 33 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 34 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 36 H 0.14 4.04 5.43 -2.91 -0.02 4.02 16 Total: -1.00 -81.94 310.92 5.30 -76.65 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 0.42 Total: 9.93 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: 3.37 Total: -22.89 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: 0.28 Total: -58.79 kcal Atomic # 8 Polarization: -53.66 SS G_CDS: -0.81 Total: -54.47 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.57 kcal Total: -81.94 5.30 -76.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829181741.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.011 kcal (2) G-P(sol) polarization free energy of solvation -81.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds