Wall clock time and date at job start Mon Mar 30 2020 06:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35973 * 116.99683 * 2 1 4 4 C 1.38584 * 120.07943 * 0.02562 * 3 2 1 5 5 C 1.38219 * 120.00335 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.14866 * 359.97438 * 5 4 3 7 7 C 1.38223 * 120.15333 * 0.02562 * 6 5 4 8 8 C 1.38591 * 119.99721 * 359.72458 * 7 6 5 9 9 O 1.35991 * 120.07552 * 180.29591 * 8 7 6 10 10 C 1.34236 * 117.00102 * 261.14016 * 9 8 7 11 11 O 1.20826 * 120.00167 * 5.41705 * 10 9 8 12 12 C 1.50705 * 119.99824 * 185.41854 * 10 9 8 13 13 C 1.53000 * 109.46837 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.46826 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.47243 * 180.02562 * 14 13 12 16 16 H 1.08007 * 120.00068 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00565 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99620 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00210 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47391 * 0.02562 * 19 17 15 21 21 H 1.48511 * 109.46694 * 120.00219 * 19 17 15 22 22 H 1.48493 * 109.47465 * 240.00080 * 19 17 15 23 23 H 1.08994 * 109.47418 * 299.99746 * 1 2 3 24 24 H 1.09001 * 109.47438 * 59.99835 * 1 2 3 25 25 H 1.09006 * 109.46921 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99557 * 359.97438 * 4 3 2 27 27 H 1.07999 * 119.92174 * 179.97438 * 5 4 3 28 28 H 1.08000 * 119.92345 * 179.97438 * 6 5 4 29 29 H 1.08001 * 119.99750 * 180.02562 * 7 6 5 30 30 H 1.08998 * 109.47196 * 300.00543 * 12 10 9 31 31 H 1.09000 * 109.46848 * 59.99987 * 12 10 9 32 32 H 1.08997 * 109.47496 * 300.00579 * 13 12 10 33 33 H 1.09007 * 109.46464 * 60.00364 * 13 12 10 34 34 H 1.09001 * 109.47286 * 300.00216 * 14 13 12 35 35 H 1.08998 * 109.47528 * 60.00401 * 14 13 12 36 36 H 0.96998 * 119.99931 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2930 2.3748 0.0005 5 6 1.9221 3.6056 0.0000 6 6 3.3028 3.6798 -0.0005 7 6 4.0602 2.5236 -0.0011 8 6 3.4359 1.2862 0.0047 9 8 4.1796 0.1477 0.0103 10 6 4.3589 -0.4689 -1.1686 11 8 3.9528 0.0419 -2.1855 12 6 5.0666 -1.7983 -1.2236 13 6 5.1369 -2.2789 -2.6745 14 6 5.8559 -3.6282 -2.7304 15 6 5.9257 -4.1014 -4.1595 16 1 5.4994 -3.5000 -4.9489 17 6 6.5328 -5.3025 -4.4592 18 7 7.0506 -6.0354 -3.4979 19 14 6.6187 -5.8892 -6.2306 20 1 5.9673 -4.8900 -7.1152 21 1 8.0399 -6.0513 -6.6299 22 1 5.9179 -7.1924 -6.3549 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2144 2.3197 0.0005 27 1 1.3338 4.5113 0.0000 28 1 3.7905 4.6433 -0.0014 29 1 5.1385 2.5844 -0.0011 30 1 6.0760 -1.6892 -0.8272 31 1 4.5184 -2.5267 -0.6261 32 1 4.1272 -2.3880 -3.0704 33 1 5.6848 -1.5505 -3.2723 34 1 6.8656 -3.5186 -2.3346 35 1 5.3084 -4.3568 -2.1325 36 1 7.4774 -6.8806 -3.7087 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846764300.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:36 Heat of formation + Delta-G solvation = -102.776786 kcal Electronic energy + Delta-G solvation = -19208.515145 eV Core-core repulsion = 16044.259024 eV Total energy + Delta-G solvation = -3164.256121 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.29015 -39.60294 -37.64223 -36.59731 -34.28497 -32.12654 -30.76369 -30.23990 -28.14296 -27.44538 -24.58984 -22.90015 -22.50502 -21.07504 -19.84989 -18.55411 -17.60307 -16.92964 -16.87224 -16.09708 -15.77220 -15.55315 -15.15371 -14.57810 -14.40751 -14.23414 -13.46486 -13.38895 -12.80327 -12.40290 -12.25025 -12.12161 -11.91077 -11.52604 -11.38870 -11.35482 -10.84044 -10.81087 -10.68294 -10.54399 -10.27050 -9.72224 -9.42272 -9.13116 -9.02971 -8.36473 -8.33252 -5.98448 -4.00134 0.90224 1.14941 2.47540 2.88609 3.06720 3.33578 3.40895 3.46409 3.60448 4.48551 4.53781 4.58016 4.81768 4.87896 4.94028 5.07035 5.13403 5.28333 5.37706 5.37796 5.55379 5.64129 5.77563 5.93799 6.00406 6.14941 6.20661 6.41430 6.64059 6.68872 6.83921 7.07467 7.15479 7.68781 7.80393 8.01550 8.13404 8.44424 9.06790 9.63896 11.13075 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.033731 B = 0.003536 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.902414 B = 7916.098050 C = 8175.850624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.307 6.307 3 C 0.125 3.875 4 C -0.200 4.200 5 C -0.081 4.081 6 C -0.145 4.145 7 C -0.082 4.082 8 C 0.059 3.941 9 O -0.292 6.292 10 C 0.459 3.541 11 O -0.492 6.492 12 C -0.108 4.108 13 C -0.099 4.099 14 C 0.021 3.979 15 C -0.518 4.518 16 H 0.057 0.943 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.103 0.897 26 H 0.134 0.866 27 H 0.129 0.871 28 H 0.132 0.868 29 H 0.138 0.862 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.478 17.777 10.881 23.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.220 6.220 3 C 0.078 3.922 4 C -0.218 4.218 5 C -0.099 4.099 6 C -0.164 4.164 7 C -0.101 4.101 8 C 0.017 3.983 9 O -0.208 6.208 10 C 0.303 3.697 11 O -0.376 6.376 12 C -0.145 4.145 13 C -0.137 4.137 14 C -0.016 4.016 15 C -0.557 4.557 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.122 0.878 26 H 0.152 0.848 27 H 0.147 0.853 28 H 0.150 0.850 29 H 0.156 0.844 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.434 17.582 10.573 23.487 hybrid contribution -0.248 -0.200 -0.942 0.994 sum -11.682 17.382 9.631 23.051 Atomic orbital electron populations 1.23118 0.78023 1.04426 1.01237 1.86171 1.21682 1.26055 1.88083 1.19299 0.91316 0.85322 0.96234 1.21144 1.00168 0.91783 1.08741 1.20999 0.94700 0.97008 0.97192 1.20935 0.93749 0.97979 1.03715 1.21117 1.00880 0.90292 0.97772 1.17895 0.86489 0.86086 1.07872 1.84731 1.64636 1.35456 1.35962 1.24880 0.76965 0.87327 0.80484 1.90645 1.46827 1.65196 1.34932 1.21714 1.00944 0.88711 1.03162 1.21592 1.01849 1.00004 0.90256 1.19132 0.95368 0.89781 0.97356 1.21277 1.36661 1.04593 0.93149 0.92496 1.25020 0.95500 0.96744 0.97241 1.69971 1.38607 1.13301 1.31695 0.86526 0.77686 0.78637 0.85120 1.19699 1.21014 1.21023 0.92540 0.92492 0.87836 0.84816 0.85289 0.85045 0.84435 0.87918 0.87821 0.92417 0.92405 0.96284 0.96288 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.40 10.22 -34.15 -0.35 -4.75 16 3 C 0.12 1.76 6.65 -39.11 -0.26 1.50 16 4 C -0.20 -2.16 9.04 -39.46 -0.36 -2.52 16 5 C -0.08 -0.76 10.04 -39.58 -0.40 -1.16 16 6 C -0.15 -1.45 10.04 -39.58 -0.40 -1.84 16 7 C -0.08 -1.02 9.98 -39.46 -0.39 -1.42 16 8 C 0.06 0.90 4.97 -39.11 -0.19 0.70 16 9 O -0.29 -4.86 9.81 -29.07 -0.29 -5.15 16 10 C 0.46 8.36 7.80 36.01 0.28 8.64 16 11 O -0.49 -10.27 15.72 -18.75 -0.29 -10.56 16 12 C -0.11 -1.90 5.81 -27.88 -0.16 -2.06 16 13 C -0.10 -2.15 4.44 -26.73 -0.12 -2.27 16 14 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 15 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 16 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 19 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 24 H 0.06 0.46 7.66 -51.93 -0.40 0.07 16 25 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.13 1.08 6.30 -52.49 -0.33 0.75 16 27 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 28 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 29 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 31 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16 32 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 33 H 0.06 1.28 8.10 -51.92 -0.42 0.86 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 316.77 15.07 4.77 4.77 Total: -1.00 -34.16 316.77 -6.89 -41.04 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -4.89 Total: -3.49 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -1.56 Total: -12.55 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.93 Total: -20.45 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.16 -6.89 -41.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846764300.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.733 kcal (2) G-P(sol) polarization free energy of solvation -34.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds