Wall clock time and date at job start Mon Mar 30 2020 06:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35973 * 116.99683 * 2 1 4 4 C 1.38584 * 120.07943 * 0.02562 * 3 2 1 5 5 C 1.38219 * 120.00335 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.14866 * 359.97438 * 5 4 3 7 7 C 1.38223 * 120.15333 * 0.02562 * 6 5 4 8 8 C 1.38591 * 119.99721 * 359.72458 * 7 6 5 9 9 O 1.35991 * 120.07552 * 180.29591 * 8 7 6 10 10 C 1.34236 * 117.00102 * 261.14016 * 9 8 7 11 11 O 1.20826 * 120.00167 * 5.41705 * 10 9 8 12 12 C 1.50705 * 119.99824 * 185.41854 * 10 9 8 13 13 C 1.53000 * 109.46837 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.46826 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.47243 * 180.02562 * 14 13 12 16 16 H 1.08007 * 120.00068 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00565 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99620 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00210 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47391 * 0.02562 * 19 17 15 21 21 H 1.48511 * 109.46694 * 120.00219 * 19 17 15 22 22 H 1.48493 * 109.47465 * 240.00080 * 19 17 15 23 23 H 1.08994 * 109.47418 * 299.99746 * 1 2 3 24 24 H 1.09001 * 109.47438 * 59.99835 * 1 2 3 25 25 H 1.09006 * 109.46921 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99557 * 359.97438 * 4 3 2 27 27 H 1.07999 * 119.92174 * 179.97438 * 5 4 3 28 28 H 1.08000 * 119.92345 * 179.97438 * 6 5 4 29 29 H 1.08001 * 119.99750 * 180.02562 * 7 6 5 30 30 H 1.08998 * 109.47196 * 300.00543 * 12 10 9 31 31 H 1.09000 * 109.46848 * 59.99987 * 12 10 9 32 32 H 1.08997 * 109.47496 * 300.00579 * 13 12 10 33 33 H 1.09007 * 109.46464 * 60.00364 * 13 12 10 34 34 H 1.09001 * 109.47286 * 300.00216 * 14 13 12 35 35 H 1.08998 * 109.47528 * 60.00401 * 14 13 12 36 36 H 0.96998 * 119.99931 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2930 2.3748 0.0005 5 6 1.9221 3.6056 0.0000 6 6 3.3028 3.6798 -0.0005 7 6 4.0602 2.5236 -0.0011 8 6 3.4359 1.2862 0.0047 9 8 4.1796 0.1477 0.0103 10 6 4.3589 -0.4689 -1.1686 11 8 3.9528 0.0419 -2.1855 12 6 5.0666 -1.7983 -1.2236 13 6 5.1369 -2.2789 -2.6745 14 6 5.8559 -3.6282 -2.7304 15 6 5.9257 -4.1014 -4.1595 16 1 5.4994 -3.5000 -4.9489 17 6 6.5328 -5.3025 -4.4592 18 7 7.0506 -6.0354 -3.4979 19 14 6.6187 -5.8892 -6.2306 20 1 5.9673 -4.8900 -7.1152 21 1 8.0399 -6.0513 -6.6299 22 1 5.9179 -7.1924 -6.3549 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2144 2.3197 0.0005 27 1 1.3338 4.5113 0.0000 28 1 3.7905 4.6433 -0.0014 29 1 5.1385 2.5844 -0.0011 30 1 6.0760 -1.6892 -0.8272 31 1 4.5184 -2.5267 -0.6261 32 1 4.1272 -2.3880 -3.0704 33 1 5.6848 -1.5505 -3.2723 34 1 6.8656 -3.5186 -2.3346 35 1 5.3084 -4.3568 -2.1325 36 1 7.4774 -6.8806 -3.7087 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846764300.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:36 Heat of formation + Delta-G solvation = -122.390053 kcal Electronic energy + Delta-G solvation = -19209.365640 eV Core-core repulsion = 16044.259024 eV Total energy + Delta-G solvation = -3165.106616 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.45271 -40.66948 -38.66810 -37.78637 -36.20552 -34.13329 -31.70707 -31.14862 -29.90880 -28.23788 -26.37103 -24.26355 -23.36365 -22.50294 -21.48625 -19.61842 -18.77697 -18.54522 -18.01918 -17.79597 -16.77341 -16.69314 -16.46092 -16.05056 -15.58429 -15.38764 -14.77860 -14.68375 -14.26965 -13.90336 -13.56531 -13.31406 -13.10738 -12.99095 -12.68571 -12.59243 -12.44623 -12.35990 -12.12582 -11.86499 -11.76743 -11.62004 -11.43864 -11.19552 -10.55163 -9.98743 -9.27915 -8.20532 -6.30685 -0.02021 0.29173 1.07771 1.40187 1.40402 1.54116 1.74693 2.23220 2.41837 2.69147 3.12789 3.59247 3.78092 3.90259 4.06569 4.13565 4.18551 4.30947 4.32159 4.34184 4.46310 4.60324 4.64734 4.79862 4.85805 5.00217 5.10131 5.12253 5.20649 5.38472 5.41825 5.51918 5.70057 5.70834 5.84637 6.23927 6.25196 6.80002 6.84635 7.38001 8.91371 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.033731 B = 0.003536 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.902414 B = 7916.098050 C = 8175.850624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.102 3.898 4 C -0.201 4.201 5 C -0.071 4.071 6 C -0.143 4.143 7 C -0.094 4.094 8 C 0.007 3.993 9 O -0.290 6.290 10 C 0.465 3.535 11 O -0.525 6.525 12 C -0.101 4.101 13 C -0.084 4.084 14 C 0.026 3.974 15 C -0.546 4.546 16 H 0.053 0.947 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.964 3.036 20 H -0.267 1.267 21 H -0.275 1.275 22 H -0.276 1.276 23 H 0.079 0.921 24 H 0.064 0.936 25 H 0.113 0.887 26 H 0.161 0.839 27 H 0.170 0.830 28 H 0.165 0.835 29 H 0.145 0.855 30 H 0.124 0.876 31 H 0.118 0.882 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.006 0.994 35 H 0.003 0.997 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.513 19.550 10.828 25.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.056 3.944 4 C -0.220 4.220 5 C -0.088 4.088 6 C -0.161 4.161 7 C -0.112 4.112 8 C -0.035 4.035 9 O -0.205 6.205 10 C 0.311 3.689 11 O -0.412 6.412 12 C -0.138 4.138 13 C -0.122 4.122 14 C -0.011 4.011 15 C -0.584 4.584 16 H 0.071 0.929 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.788 3.212 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.201 1.201 23 H 0.097 0.903 24 H 0.083 0.917 25 H 0.131 0.869 26 H 0.178 0.822 27 H 0.187 0.813 28 H 0.183 0.817 29 H 0.163 0.837 30 H 0.142 0.858 31 H 0.136 0.864 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.024 0.976 35 H 0.022 0.978 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.477 19.365 10.549 25.337 hybrid contribution 0.002 -0.650 -0.853 1.073 sum -12.475 18.715 9.695 24.492 Atomic orbital electron populations 1.23401 0.75837 1.05657 1.02697 1.86109 1.24166 1.26901 1.88365 1.19611 0.91337 0.86365 0.97112 1.21543 1.01491 0.91225 1.07733 1.21545 0.94865 0.97910 0.94500 1.21387 0.94226 0.98375 1.02079 1.21401 1.01725 0.90309 0.97793 1.18448 0.87399 0.86177 1.11461 1.84691 1.64767 1.36436 1.34627 1.24767 0.76213 0.87220 0.80690 1.90615 1.48338 1.66168 1.36127 1.21541 1.02570 0.89169 1.00557 1.21273 1.00247 0.97645 0.93012 1.19011 0.94808 0.91502 0.95822 1.21679 1.37102 1.05221 0.94438 0.92855 1.25914 0.94877 0.96782 1.01942 1.70076 1.39082 1.13783 1.33971 0.85422 0.78075 0.78227 0.79469 1.19147 1.20077 1.20116 0.90272 0.91689 0.86906 0.82156 0.81277 0.81728 0.83722 0.85813 0.86394 0.93588 0.93196 0.97599 0.97813 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.34 -9.84 10.22 -79.38 -0.81 -10.66 16 3 C 0.10 2.84 6.65 22.58 0.15 2.99 16 4 C -0.20 -3.91 9.04 22.35 0.20 -3.71 16 5 C -0.07 -1.08 10.04 22.27 0.22 -0.85 16 6 C -0.14 -2.44 10.04 22.27 0.22 -2.22 16 7 C -0.09 -2.27 9.98 22.35 0.22 -2.04 16 8 C 0.01 0.21 4.97 22.58 0.11 0.32 16 9 O -0.29 -9.88 9.81 9.14 0.09 -9.80 16 10 C 0.47 17.32 7.80 71.24 0.56 17.87 16 11 O -0.53 -22.55 15.72 21.96 0.35 -22.20 16 12 C -0.10 -3.61 5.81 29.85 0.17 -3.44 16 13 C -0.08 -3.74 4.44 30.59 0.14 -3.60 16 14 C 0.03 1.36 4.97 29.85 0.15 1.51 16 15 C -0.55 -32.10 9.11 25.60 0.23 -31.86 16 16 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 17 C 0.00 0.17 5.46 84.66 0.46 0.63 16 18 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 19 Si 0.96 45.17 29.54 68.60 2.03 47.20 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 23 H 0.08 0.95 7.66 -2.39 -0.02 0.94 16 24 H 0.06 0.98 7.66 -2.39 -0.02 0.96 16 25 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 26 H 0.16 2.09 6.30 -2.91 -0.02 2.08 16 27 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 28 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 29 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 30 H 0.12 3.88 8.14 -2.39 -0.02 3.86 16 31 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 32 H 0.05 2.12 8.10 -2.39 -0.02 2.10 16 33 H 0.05 2.27 8.10 -2.38 -0.02 2.25 16 34 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.00 0.19 8.14 -2.39 -0.02 0.18 16 36 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -75.31 316.77 6.96 -68.36 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: 1.07 Total: 6.30 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: 3.96 Total: -22.97 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.28 Total: -56.23 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -0.38 Total: -42.65 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -75.31 6.96 -68.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846764300.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.033 kcal (2) G-P(sol) polarization free energy of solvation -75.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds