Wall clock time and date at job start Mon Mar 30 2020 06:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42892 * 109.47266 * 2 1 4 4 C 1.35971 * 117.00102 * 179.97438 * 3 2 1 5 5 C 1.38589 * 120.07199 * 0.02562 * 4 3 2 6 6 C 1.38220 * 119.99573 * 179.97438 * 5 4 3 7 7 C 1.38277 * 120.15477 * 359.97438 * 6 5 4 8 8 C 1.38210 * 120.14724 * 0.02562 * 7 6 5 9 9 C 1.38593 * 120.00251 * 359.97438 * 8 7 6 10 10 O 1.35997 * 120.07462 * 179.97438 * 9 8 7 11 11 C 1.34235 * 116.99922 * 261.11871 * 10 9 8 12 12 O 1.20830 * 120.00246 * 5.42324 * 11 10 9 13 13 C 1.50704 * 119.99866 * 185.41517 * 11 10 9 14 14 H 1.08996 * 109.46870 * 60.00572 * 13 11 10 15 15 C 1.52995 * 109.47239 * 300.00377 * 13 11 10 16 16 C 1.50699 * 109.46899 * 180.02562 * 13 11 10 17 17 H 1.08004 * 120.00405 * 0.02562 * 16 13 11 18 18 C 1.37873 * 120.00053 * 180.02562 * 16 13 11 19 19 N 1.31522 * 120.00055 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 120.00467 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.47175 * 59.99675 * 20 18 16 22 22 H 1.48495 * 109.47557 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47103 * 300.00025 * 20 18 16 24 24 H 1.08998 * 109.46868 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46873 * 299.99768 * 1 2 3 26 26 H 1.08995 * 109.47288 * 59.99073 * 1 2 3 27 27 H 1.09006 * 109.46655 * 240.00678 * 2 1 3 28 28 H 1.08995 * 109.47288 * 120.00927 * 2 1 3 29 29 H 1.08001 * 120.00441 * 359.95376 * 5 4 3 30 30 H 1.08009 * 119.92605 * 179.71915 * 6 5 4 31 31 H 1.08001 * 119.92532 * 179.97438 * 7 6 5 32 32 H 1.08004 * 119.99921 * 180.02562 * 8 7 6 33 33 H 1.09002 * 109.47357 * 59.99613 * 15 13 11 34 34 H 1.08998 * 109.47319 * 179.97438 * 15 13 11 35 35 H 1.09010 * 109.47218 * 299.99869 * 15 13 11 36 36 H 0.97001 * 120.00429 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3544 1.5253 0.0005 5 6 4.2000 0.4273 0.0005 6 6 5.5700 0.6102 0.0005 7 6 6.1003 1.8873 0.0000 8 6 5.2627 2.9867 0.0001 9 6 3.8880 2.8106 0.0000 10 8 3.0625 3.8913 0.0006 11 6 2.5459 4.2629 1.1825 12 8 2.8964 3.7074 2.1966 13 6 1.5288 5.3733 1.2446 14 1 0.6568 5.1008 0.6501 15 6 2.1432 6.6595 0.6888 16 6 1.1125 5.5936 2.6760 17 1 1.5417 4.9903 3.4623 18 6 0.1835 6.5654 2.9820 19 7 -0.3397 7.2997 2.0246 20 14 -0.3321 6.8391 4.7564 21 1 0.8563 7.2114 5.5654 22 1 -1.3344 7.9331 4.8177 23 1 -0.9275 5.5908 5.2971 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.7885 -0.5712 0.0008 30 1 6.2280 -0.2463 0.0051 31 1 7.1714 2.0259 0.0005 32 1 5.6795 3.9831 -0.0008 33 1 2.4448 6.5004 -0.3465 34 1 1.4075 7.4624 0.7333 35 1 3.0153 6.9320 1.2834 36 1 -0.9935 7.9832 2.2397 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850745568.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:10 Heat of formation + Delta-G solvation = -96.934887 kcal Electronic energy + Delta-G solvation = -20065.502657 eV Core-core repulsion = 16901.499861 eV Total energy + Delta-G solvation = -3164.002797 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.78435 -39.17179 -37.35996 -35.92612 -33.86279 -31.84040 -30.80598 -30.20056 -29.03523 -25.19357 -24.13931 -23.90087 -21.94655 -21.57842 -19.95203 -18.21714 -17.08724 -16.40752 -16.20147 -16.07889 -15.75466 -15.03399 -14.62177 -14.36946 -14.00974 -13.39815 -13.26023 -12.92338 -12.61165 -12.51844 -11.98474 -11.93659 -11.71734 -11.49861 -11.12683 -11.00030 -10.80566 -10.72582 -10.68663 -10.37397 -10.19993 -10.04518 -9.29306 -9.04263 -8.72081 -8.43030 -7.99128 -6.08606 -4.14082 1.26205 1.46885 3.19242 3.30718 3.33918 3.36228 3.40476 3.52318 4.05234 4.43499 4.79498 4.89914 4.92512 5.05777 5.16486 5.21236 5.24528 5.39380 5.49267 5.59011 5.79151 5.81920 6.09705 6.24230 6.32274 6.36350 6.50184 6.68739 6.76882 6.88791 6.93143 7.26565 7.45987 7.56459 7.76051 7.97190 8.15988 8.89794 8.97381 9.51006 10.98751 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.021088 B = 0.005833 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.444035 B = 4798.725946 C = 5465.262159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.302 6.302 4 C 0.124 3.876 5 C -0.201 4.201 6 C -0.089 4.089 7 C -0.147 4.147 8 C -0.087 4.087 9 C 0.069 3.931 10 O -0.299 6.299 11 C 0.467 3.533 12 O -0.501 6.501 13 C 0.062 3.938 14 H 0.067 0.933 15 C -0.135 4.135 16 C -0.512 4.512 17 H 0.075 0.925 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.905 3.095 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.276 1.276 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.130 0.870 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.136 0.864 33 H 0.024 0.976 34 H 0.097 0.903 35 H 0.032 0.968 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.177 -12.813 -6.658 16.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.216 6.216 4 C 0.077 3.923 5 C -0.220 4.220 6 C -0.107 4.107 7 C -0.165 4.165 8 C -0.106 4.106 9 C 0.026 3.974 10 O -0.215 6.215 11 C 0.312 3.688 12 O -0.386 6.386 13 C 0.043 3.957 14 H 0.084 0.916 15 C -0.193 4.193 16 C -0.550 4.550 17 H 0.093 0.907 18 C -0.139 4.139 19 N -0.530 5.530 20 Si 0.733 3.267 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.148 0.852 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.154 0.846 33 H 0.043 0.957 34 H 0.115 0.885 35 H 0.051 0.949 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.989 -12.690 -6.346 15.817 hybrid contribution -0.143 -0.201 0.955 0.987 sum 6.846 -12.891 -5.391 15.560 Atomic orbital electron populations 1.21775 0.92530 1.02537 1.04188 1.22797 0.96256 0.82012 1.00951 1.86215 1.18215 1.29119 1.88003 1.19288 0.83153 0.93380 0.96442 1.21092 0.94254 0.97495 1.09177 1.20913 0.94140 0.97313 0.98304 1.20879 0.99658 0.91880 1.04089 1.21117 0.90925 1.00261 0.98281 1.18008 0.89391 0.84104 1.05889 1.84821 1.57304 1.42170 1.37232 1.25794 0.79944 0.83637 0.79399 1.90504 1.58114 1.54518 1.35423 1.18770 0.90075 0.86979 0.99835 0.91581 1.21755 1.00770 1.00384 0.96372 1.21084 1.23886 1.19020 0.91021 0.90733 1.24923 0.95664 0.95372 0.97944 1.69874 1.29155 1.22134 1.31875 0.86430 0.78301 0.77758 0.84224 1.20080 1.21171 1.20112 0.90533 0.91046 0.91339 0.92216 0.92163 0.85189 0.85637 0.85385 0.84650 0.95677 0.88457 0.94904 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 10.28 37.16 0.38 -1.38 16 2 C 0.06 0.71 5.46 37.16 0.20 0.91 16 3 O -0.30 -5.54 9.87 -34.14 -0.34 -5.87 16 4 C 0.12 2.22 6.65 -39.11 -0.26 1.96 16 5 C -0.20 -2.82 9.04 -39.46 -0.36 -3.18 16 6 C -0.09 -1.09 10.04 -39.57 -0.40 -1.49 16 7 C -0.15 -1.92 10.04 -39.58 -0.40 -2.32 16 8 C -0.09 -1.42 9.98 -39.46 -0.39 -1.81 16 9 C 0.07 1.35 4.97 -39.11 -0.19 1.15 16 10 O -0.30 -6.69 9.72 -29.09 -0.28 -6.97 16 11 C 0.47 11.74 7.10 36.01 0.26 12.00 16 12 O -0.50 -13.63 15.20 -18.75 -0.29 -13.91 16 13 C 0.06 1.65 2.74 -92.92 -0.25 1.39 16 14 H 0.07 1.81 8.14 -51.93 -0.42 1.39 16 15 C -0.14 -3.28 8.90 37.15 0.33 -2.95 16 16 C -0.51 -14.70 8.37 -34.44 -0.29 -14.99 16 17 H 0.07 2.23 6.76 -52.48 -0.35 1.88 16 18 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 19 N -0.89 -25.07 11.32 55.43 0.63 -24.44 16 20 Si 0.91 21.75 29.54 -169.99 -5.02 16.73 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 28 H 0.06 0.71 7.66 -51.93 -0.40 0.32 16 29 H 0.13 1.44 6.30 -52.49 -0.33 1.11 16 30 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 31 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.14 2.00 8.06 -52.48 -0.42 1.58 16 33 H 0.02 0.53 8.11 -51.93 -0.42 0.11 16 34 H 0.10 2.52 6.07 -51.93 -0.32 2.20 16 35 H 0.03 0.77 8.14 -51.92 -0.42 0.35 16 36 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 311.59 15.07 4.70 4.70 Total: -1.00 -32.20 311.59 -6.80 -39.00 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -4.74 Total: -0.17 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -1.47 Total: -9.06 kcal Atomic # 7 Polarization: -25.07 SS G_CDS: 0.63 Total: -24.44 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.90 Total: -26.76 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.20 -6.80 -39.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850745568.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.935 kcal (2) G-P(sol) polarization free energy of solvation -32.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds