Wall clock time and date at job start Mon Mar 30 2020 06:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42892 * 109.47266 * 2 1 4 4 C 1.35971 * 117.00102 * 179.97438 * 3 2 1 5 5 C 1.38589 * 120.07199 * 0.02562 * 4 3 2 6 6 C 1.38220 * 119.99573 * 179.97438 * 5 4 3 7 7 C 1.38277 * 120.15477 * 359.97438 * 6 5 4 8 8 C 1.38210 * 120.14724 * 0.02562 * 7 6 5 9 9 C 1.38593 * 120.00251 * 359.97438 * 8 7 6 10 10 O 1.35997 * 120.07462 * 179.97438 * 9 8 7 11 11 C 1.34235 * 116.99922 * 261.11871 * 10 9 8 12 12 O 1.20830 * 120.00246 * 5.42324 * 11 10 9 13 13 C 1.50704 * 119.99866 * 185.41517 * 11 10 9 14 14 H 1.08996 * 109.46870 * 60.00572 * 13 11 10 15 15 C 1.52995 * 109.47239 * 300.00377 * 13 11 10 16 16 C 1.50699 * 109.46899 * 180.02562 * 13 11 10 17 17 H 1.08004 * 120.00405 * 0.02562 * 16 13 11 18 18 C 1.37873 * 120.00053 * 180.02562 * 16 13 11 19 19 N 1.31522 * 120.00055 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 120.00467 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.47175 * 59.99675 * 20 18 16 22 22 H 1.48495 * 109.47557 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47103 * 300.00025 * 20 18 16 24 24 H 1.08998 * 109.46868 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46873 * 299.99768 * 1 2 3 26 26 H 1.08995 * 109.47288 * 59.99073 * 1 2 3 27 27 H 1.09006 * 109.46655 * 240.00678 * 2 1 3 28 28 H 1.08995 * 109.47288 * 120.00927 * 2 1 3 29 29 H 1.08001 * 120.00441 * 359.95376 * 5 4 3 30 30 H 1.08009 * 119.92605 * 179.71915 * 6 5 4 31 31 H 1.08001 * 119.92532 * 179.97438 * 7 6 5 32 32 H 1.08004 * 119.99921 * 180.02562 * 8 7 6 33 33 H 1.09002 * 109.47357 * 59.99613 * 15 13 11 34 34 H 1.08998 * 109.47319 * 179.97438 * 15 13 11 35 35 H 1.09010 * 109.47218 * 299.99869 * 15 13 11 36 36 H 0.97001 * 120.00429 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3544 1.5253 0.0005 5 6 4.2000 0.4273 0.0005 6 6 5.5700 0.6102 0.0005 7 6 6.1003 1.8873 0.0000 8 6 5.2627 2.9867 0.0001 9 6 3.8880 2.8106 0.0000 10 8 3.0625 3.8913 0.0006 11 6 2.5459 4.2629 1.1825 12 8 2.8964 3.7074 2.1966 13 6 1.5288 5.3733 1.2446 14 1 0.6568 5.1008 0.6501 15 6 2.1432 6.6595 0.6888 16 6 1.1125 5.5936 2.6760 17 1 1.5417 4.9903 3.4623 18 6 0.1835 6.5654 2.9820 19 7 -0.3397 7.2997 2.0246 20 14 -0.3321 6.8391 4.7564 21 1 0.8563 7.2114 5.5654 22 1 -1.3344 7.9331 4.8177 23 1 -0.9275 5.5908 5.2971 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.7885 -0.5712 0.0008 30 1 6.2280 -0.2463 0.0051 31 1 7.1714 2.0259 0.0005 32 1 5.6795 3.9831 -0.0008 33 1 2.4448 6.5004 -0.3465 34 1 1.4075 7.4624 0.7333 35 1 3.0153 6.9320 1.2834 36 1 -0.9935 7.9832 2.2397 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850745568.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:09 Heat of formation + Delta-G solvation = -115.102676 kcal Electronic energy + Delta-G solvation = -20066.290472 eV Core-core repulsion = 16901.499861 eV Total energy + Delta-G solvation = -3164.790611 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.31094 -40.62928 -38.65561 -37.60314 -35.96655 -32.93748 -32.69737 -31.48387 -30.24784 -27.33052 -25.73906 -25.12213 -23.46039 -22.72209 -21.65002 -19.54961 -18.69705 -18.19599 -18.00632 -17.62210 -17.07193 -16.51365 -16.14485 -15.94458 -15.33971 -14.80818 -14.76454 -14.49602 -14.18948 -13.65697 -13.45576 -13.09656 -13.03743 -12.98224 -12.84047 -12.78933 -12.65421 -12.34512 -12.24941 -12.06358 -11.73740 -11.70316 -11.22686 -11.16102 -10.57560 -9.93793 -9.22393 -8.22371 -6.36734 0.04028 0.32360 1.34689 1.40247 1.42923 1.51011 1.95617 2.19459 2.41971 2.77855 3.06964 3.72486 3.82422 3.98169 4.02215 4.12684 4.23688 4.32284 4.36728 4.49038 4.62622 4.75726 4.81047 4.84554 4.85742 4.97374 5.10604 5.20736 5.23888 5.35954 5.40118 5.50579 5.65111 5.77141 5.85478 6.05282 6.35022 6.68733 7.08213 7.31898 8.84168 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.021088 B = 0.005833 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.444035 B = 4798.725946 C = 5465.262159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.045 3.955 3 O -0.343 6.343 4 C 0.101 3.899 5 C -0.200 4.200 6 C -0.071 4.071 7 C -0.140 4.140 8 C -0.099 4.099 9 C 0.006 3.994 10 O -0.299 6.299 11 C 0.473 3.527 12 O -0.531 6.531 13 C 0.056 3.944 14 H 0.047 0.953 15 C -0.121 4.121 16 C -0.541 4.541 17 H 0.054 0.946 18 C 0.024 3.976 19 N -0.908 5.908 20 Si 0.966 3.034 21 H -0.272 1.272 22 H -0.270 1.270 23 H -0.275 1.275 24 H 0.113 0.887 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.162 0.838 30 H 0.174 0.826 31 H 0.168 0.832 32 H 0.139 0.861 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.032 0.968 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.712 -14.737 -6.728 18.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.257 6.257 4 C 0.055 3.945 5 C -0.218 4.218 6 C -0.089 4.089 7 C -0.158 4.158 8 C -0.117 4.117 9 C -0.036 4.036 10 O -0.215 6.215 11 C 0.319 3.681 12 O -0.418 6.418 13 C 0.037 3.963 14 H 0.065 0.935 15 C -0.179 4.179 16 C -0.579 4.579 17 H 0.072 0.928 18 C -0.176 4.176 19 N -0.546 5.546 20 Si 0.791 3.209 21 H -0.198 1.198 22 H -0.195 1.195 23 H -0.200 1.200 24 H 0.132 0.868 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.179 0.821 30 H 0.192 0.808 31 H 0.185 0.815 32 H 0.157 0.843 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.051 0.949 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.528 -14.617 -6.455 18.112 hybrid contribution -0.536 0.252 0.883 1.063 sum 7.993 -14.364 -5.571 17.357 Atomic orbital electron populations 1.21834 0.92052 1.04428 1.02559 1.23154 0.96751 0.80276 1.02723 1.86167 1.18948 1.32288 1.88312 1.19606 0.83668 0.93934 0.97301 1.21527 0.94789 0.97649 1.07873 1.21539 0.93965 0.98583 0.94785 1.21372 1.01193 0.91162 1.02085 1.21384 0.90037 1.01951 0.98325 1.18628 0.90440 0.83918 1.10627 1.84743 1.57832 1.43616 1.35284 1.25367 0.79653 0.83020 0.80017 1.90453 1.59319 1.55394 1.36616 1.18677 0.90245 0.88632 0.98760 0.93545 1.21580 0.99991 0.98722 0.97587 1.21170 1.25207 1.19814 0.91659 0.92768 1.25660 0.95202 0.94711 1.02048 1.69957 1.29040 1.22073 1.33538 0.85491 0.78208 0.77970 0.79279 1.19753 1.19467 1.20014 0.86809 0.93599 0.92011 0.89377 0.91136 0.82089 0.80848 0.81480 0.84304 0.93439 0.89997 0.94915 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 10.28 71.98 0.74 -2.72 16 2 C 0.04 1.12 5.46 71.98 0.39 1.51 16 3 O -0.34 -12.88 9.87 -79.36 -0.78 -13.66 16 4 C 0.10 3.62 6.65 22.58 0.15 3.77 16 5 C -0.20 -5.05 9.04 22.35 0.20 -4.85 16 6 C -0.07 -1.44 10.04 22.27 0.22 -1.22 16 7 C -0.14 -3.19 10.04 22.27 0.22 -2.97 16 8 C -0.10 -3.15 9.98 22.35 0.22 -2.92 16 9 C 0.01 0.22 4.97 22.58 0.11 0.34 16 10 O -0.30 -14.04 9.72 9.08 0.09 -13.95 16 11 C 0.47 24.99 7.10 71.24 0.51 25.49 16 12 O -0.53 -30.24 15.20 21.95 0.33 -29.91 16 13 C 0.06 3.09 2.74 -12.29 -0.03 3.06 16 14 H 0.05 2.71 8.14 -2.39 -0.02 2.69 16 15 C -0.12 -6.05 8.90 71.98 0.64 -5.41 16 16 C -0.54 -32.25 8.37 25.60 0.21 -32.04 16 17 H 0.05 3.39 6.76 -2.91 -0.02 3.37 16 18 C 0.02 1.36 5.30 84.65 0.45 1.80 16 19 N -0.91 -51.74 11.32 21.45 0.24 -51.50 16 20 Si 0.97 44.95 29.54 68.60 2.03 46.97 16 21 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 24 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.04 1.25 8.14 -2.39 -0.02 1.24 16 26 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.09 1.64 7.66 -2.38 -0.02 1.62 16 28 H 0.07 1.57 7.66 -2.39 -0.02 1.55 16 29 H 0.16 2.93 6.30 -2.91 -0.02 2.92 16 30 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 31 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 32 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 33 H 0.05 2.09 8.11 -2.39 -0.02 2.07 16 34 H 0.08 4.34 6.07 -2.39 -0.01 4.33 16 35 H 0.03 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -73.56 311.59 7.03 -66.53 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 1.07 Total: 11.66 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: 4.04 Total: -16.15 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: 0.24 Total: -51.50 kcal Atomic # 8 Polarization: -57.15 SS G_CDS: -0.36 Total: -57.52 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -73.56 7.03 -66.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850745568.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.572 kcal (2) G-P(sol) polarization free energy of solvation -73.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds