Wall clock time and date at job start Mon Mar 30 2020 06:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00261 * 2 1 4 4 C 1.50691 * 109.47307 * 179.97438 * 3 2 1 5 5 C 1.38161 * 120.02812 * 0.02562 * 4 3 2 6 6 C 1.38247 * 120.05730 * 180.02562 * 5 4 3 7 7 C 1.38297 * 120.11137 * 359.95170 * 6 5 4 8 8 C 1.38117 * 120.05308 * 359.97438 * 7 6 5 9 9 C 1.38712 * 120.03033 * 180.21258 * 4 3 2 10 10 O 1.35933 * 120.05593 * 0.02562 * 9 4 3 11 11 C 1.34260 * 116.99977 * 82.30223 * 10 9 4 12 12 O 1.20834 * 120.00321 * 5.58831 * 11 10 9 13 13 C 1.50697 * 120.00157 * 185.58888 * 11 10 9 14 14 H 1.09005 * 109.46995 * 59.99747 * 13 11 10 15 15 C 1.53002 * 109.47246 * 300.00398 * 13 11 10 16 16 C 1.50705 * 109.47361 * 179.97438 * 13 11 10 17 17 H 1.07992 * 119.99687 * 0.02562 * 16 13 11 18 18 C 1.37880 * 119.99786 * 179.97438 * 16 13 11 19 19 N 1.31510 * 120.00061 * 0.02562 * 18 16 13 20 20 Si 1.86794 * 119.99727 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47346 * 59.99990 * 20 18 16 22 22 H 1.48496 * 109.47158 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47049 * 299.99991 * 20 18 16 24 24 H 1.08996 * 109.47334 * 299.99890 * 1 2 3 25 25 H 1.09001 * 109.46829 * 60.00065 * 1 2 3 26 26 H 1.09004 * 109.47267 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46790 * 59.99612 * 3 2 1 28 28 H 1.09001 * 109.47241 * 300.00243 * 3 2 1 29 29 H 1.07998 * 119.97456 * 359.97252 * 5 4 3 30 30 H 1.08001 * 119.94565 * 179.97438 * 6 5 4 31 31 H 1.08001 * 119.97304 * 180.02562 * 7 6 5 32 32 H 1.07997 * 120.03001 * 180.02562 * 8 7 6 33 33 H 1.09000 * 109.47024 * 59.99454 * 15 13 11 34 34 H 1.09000 * 109.47309 * 179.97438 * 15 13 11 35 35 H 1.09005 * 109.46592 * 299.99596 * 15 13 11 36 36 H 0.97003 * 120.00269 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1072 -0.0606 0.0006 6 6 5.4853 -0.1705 0.0017 7 6 6.2720 0.9669 0.0019 8 6 5.6823 2.2158 0.0004 9 6 4.2993 2.3287 0.0052 10 8 3.7166 3.5568 0.0096 11 6 3.3102 4.0343 1.1968 12 8 3.5589 3.4252 2.2103 13 6 2.5437 5.3300 1.2654 14 1 1.6230 5.2384 0.6891 15 6 3.3979 6.4592 0.6856 16 6 2.2082 5.6398 2.7016 17 1 2.5193 4.9661 3.4862 18 6 1.5050 6.7840 3.0139 19 7 1.1266 7.6046 2.0584 20 14 1.0897 7.1683 4.7940 21 1 2.3440 7.2926 5.5792 22 1 0.3344 8.4450 4.8616 23 1 0.2602 6.0726 5.3565 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.4951 -0.9504 0.0005 30 1 5.9484 -1.1462 0.0021 31 1 7.3484 0.8785 0.0023 32 1 6.2970 3.1038 0.0001 33 1 3.6401 6.2349 -0.3532 34 1 2.8433 7.3963 0.7348 35 1 4.3186 6.5508 1.2619 36 1 0.6316 8.4094 2.2780 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851086350.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:31 Heat of formation + Delta-G solvation = -102.881256 kcal Electronic energy + Delta-G solvation = -20006.454463 eV Core-core repulsion = 16842.193812 eV Total energy + Delta-G solvation = -3164.260651 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.79779 -38.62231 -37.46759 -36.06647 -33.97438 -31.87204 -30.87146 -29.88467 -27.21262 -25.43381 -25.28378 -23.95481 -22.10210 -21.37158 -19.93508 -17.52859 -16.72330 -16.32363 -16.20286 -16.04421 -15.71446 -15.32771 -14.72370 -14.44735 -14.06672 -13.88717 -13.20690 -12.93740 -12.64725 -12.60931 -12.01229 -11.78664 -11.62989 -11.38816 -11.12540 -11.03774 -10.88748 -10.76855 -10.43963 -10.26404 -10.12358 -9.82013 -9.39660 -9.14675 -8.68446 -8.52960 -8.36858 -6.17276 -4.23641 1.28558 1.46277 3.10585 3.28667 3.31572 3.33464 3.45271 3.69935 4.01475 4.36821 4.86919 5.06557 5.10733 5.16000 5.26805 5.34989 5.44253 5.49355 5.55496 5.62436 5.64952 5.75249 6.08885 6.24160 6.42011 6.54345 6.56587 6.59256 6.77709 6.79156 6.93058 7.15541 7.29825 7.33976 7.66698 7.87606 8.05426 8.75697 8.85557 9.42462 10.89865 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.020496 B = 0.005772 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.795635 B = 4849.659178 C = 5553.310893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.102 3.898 4 C -0.097 4.097 5 C -0.086 4.086 6 C -0.129 4.129 7 C -0.109 4.109 8 C -0.124 4.124 9 C 0.103 3.897 10 O -0.309 6.309 11 C 0.462 3.538 12 O -0.496 6.496 13 C 0.062 3.938 14 H 0.066 0.934 15 C -0.136 4.136 16 C -0.516 4.516 17 H 0.075 0.925 18 C 0.064 3.936 19 N -0.891 5.891 20 Si 0.906 3.094 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 H 0.045 0.955 25 H 0.043 0.957 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.136 0.864 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.025 0.975 34 H 0.098 0.902 35 H 0.033 0.967 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.501 -11.791 -6.658 13.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C 0.026 3.974 4 C -0.098 4.098 5 C -0.104 4.104 6 C -0.147 4.147 7 C -0.127 4.127 8 C -0.142 4.142 9 C 0.062 3.938 10 O -0.227 6.227 11 C 0.307 3.693 12 O -0.380 6.380 13 C 0.043 3.957 14 H 0.083 0.917 15 C -0.193 4.193 16 C -0.554 4.554 17 H 0.094 0.906 18 C -0.138 4.138 19 N -0.529 5.529 20 Si 0.733 3.267 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.201 1.201 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.153 0.847 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.148 0.852 33 H 0.044 0.956 34 H 0.116 0.884 35 H 0.052 0.948 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.598 -11.965 -6.343 14.012 hybrid contribution -0.369 0.449 0.949 1.113 sum 3.229 -11.515 -5.394 13.120 Atomic orbital electron populations 1.22756 0.80613 1.02613 1.00550 1.87765 1.19987 1.27458 1.95610 1.21176 0.89756 0.84845 1.01615 1.19847 0.94492 0.93272 1.02154 1.20843 0.94487 0.96811 0.98278 1.21159 0.93704 0.98541 1.01344 1.20993 0.99855 0.91799 1.00020 1.21185 0.93147 0.98657 1.01227 1.18375 0.91155 0.83630 1.00666 1.84775 1.70598 1.30232 1.37049 1.25902 0.75917 0.88154 0.79350 1.90547 1.52399 1.59557 1.35448 1.18813 0.93631 0.83361 0.99902 0.91666 1.21761 0.98996 1.02256 0.96329 1.21079 1.35934 1.07778 0.90644 0.90639 1.24923 0.95179 0.95627 0.98076 1.69861 1.38215 1.12822 1.31993 0.86419 0.78661 0.77505 0.84099 1.20006 1.21120 1.20055 0.93623 0.93866 0.89586 0.91458 0.91276 0.84666 0.85777 0.85564 0.85199 0.95625 0.88371 0.94812 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.39 -5.84 9.18 -35.23 -0.32 -6.16 16 3 C 0.10 1.71 5.61 36.00 0.20 1.91 16 4 C -0.10 -1.69 5.88 -104.48 -0.61 -2.30 16 5 C -0.09 -1.29 9.37 -39.61 -0.37 -1.66 16 6 C -0.13 -1.68 10.04 -39.56 -0.40 -2.08 16 7 C -0.11 -1.45 10.04 -39.60 -0.40 -1.85 16 8 C -0.12 -2.00 9.99 -39.43 -0.39 -2.40 16 9 C 0.10 1.93 4.93 -39.21 -0.19 1.74 16 10 O -0.31 -6.41 9.44 -23.63 -0.22 -6.63 16 11 C 0.46 10.85 6.33 36.00 0.23 11.08 16 12 O -0.50 -12.78 15.21 -18.75 -0.29 -13.06 16 13 C 0.06 1.54 2.74 -92.92 -0.25 1.29 16 14 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 15 C -0.14 -3.16 8.90 37.16 0.33 -2.83 16 16 C -0.52 -14.26 8.38 -34.44 -0.29 -14.55 16 17 H 0.08 2.18 6.76 -52.49 -0.35 1.82 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 19 N -0.89 -24.27 11.32 55.43 0.63 -23.64 16 20 Si 0.91 21.20 29.54 -169.99 -5.02 16.18 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 1.27 7.56 -51.93 -0.39 0.87 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.14 1.84 7.00 -52.49 -0.37 1.47 16 30 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 33 H 0.02 0.52 8.11 -51.93 -0.42 0.10 16 34 H 0.10 2.45 6.07 -51.93 -0.32 2.14 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 311.38 15.07 4.69 4.69 Total: -1.00 -30.01 311.38 -6.46 -36.47 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -4.79 Total: 0.69 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -1.13 Total: -8.53 kcal Atomic # 7 Polarization: -24.27 SS G_CDS: 0.63 Total: -23.64 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.83 Total: -25.86 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.01 -6.46 -36.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851086350.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.416 kcal (2) G-P(sol) polarization free energy of solvation -30.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds