Wall clock time and date at job start Mon Mar 30 2020 06:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00261 * 2 1 4 4 C 1.50691 * 109.47307 * 179.97438 * 3 2 1 5 5 C 1.38161 * 120.02812 * 0.02562 * 4 3 2 6 6 C 1.38247 * 120.05730 * 180.02562 * 5 4 3 7 7 C 1.38297 * 120.11137 * 359.95170 * 6 5 4 8 8 C 1.38117 * 120.05308 * 359.97438 * 7 6 5 9 9 C 1.38712 * 120.03033 * 180.21258 * 4 3 2 10 10 O 1.35933 * 120.05593 * 0.02562 * 9 4 3 11 11 C 1.34260 * 116.99977 * 82.30223 * 10 9 4 12 12 O 1.20834 * 120.00321 * 5.58831 * 11 10 9 13 13 C 1.50697 * 120.00157 * 185.58888 * 11 10 9 14 14 H 1.09005 * 109.46995 * 59.99747 * 13 11 10 15 15 C 1.53002 * 109.47246 * 300.00398 * 13 11 10 16 16 C 1.50705 * 109.47361 * 179.97438 * 13 11 10 17 17 H 1.07992 * 119.99687 * 0.02562 * 16 13 11 18 18 C 1.37880 * 119.99786 * 179.97438 * 16 13 11 19 19 N 1.31510 * 120.00061 * 0.02562 * 18 16 13 20 20 Si 1.86794 * 119.99727 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47346 * 59.99990 * 20 18 16 22 22 H 1.48496 * 109.47158 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47049 * 299.99991 * 20 18 16 24 24 H 1.08996 * 109.47334 * 299.99890 * 1 2 3 25 25 H 1.09001 * 109.46829 * 60.00065 * 1 2 3 26 26 H 1.09004 * 109.47267 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46790 * 59.99612 * 3 2 1 28 28 H 1.09001 * 109.47241 * 300.00243 * 3 2 1 29 29 H 1.07998 * 119.97456 * 359.97252 * 5 4 3 30 30 H 1.08001 * 119.94565 * 179.97438 * 6 5 4 31 31 H 1.08001 * 119.97304 * 180.02562 * 7 6 5 32 32 H 1.07997 * 120.03001 * 180.02562 * 8 7 6 33 33 H 1.09000 * 109.47024 * 59.99454 * 15 13 11 34 34 H 1.09000 * 109.47309 * 179.97438 * 15 13 11 35 35 H 1.09005 * 109.46592 * 299.99596 * 15 13 11 36 36 H 0.97003 * 120.00269 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1072 -0.0606 0.0006 6 6 5.4853 -0.1705 0.0017 7 6 6.2720 0.9669 0.0019 8 6 5.6823 2.2158 0.0004 9 6 4.2993 2.3287 0.0052 10 8 3.7166 3.5568 0.0096 11 6 3.3102 4.0343 1.1968 12 8 3.5589 3.4252 2.2103 13 6 2.5437 5.3300 1.2654 14 1 1.6230 5.2384 0.6891 15 6 3.3979 6.4592 0.6856 16 6 2.2082 5.6398 2.7016 17 1 2.5193 4.9661 3.4862 18 6 1.5050 6.7840 3.0139 19 7 1.1266 7.6046 2.0584 20 14 1.0897 7.1683 4.7940 21 1 2.3440 7.2926 5.5792 22 1 0.3344 8.4450 4.8616 23 1 0.2602 6.0726 5.3565 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6886 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.4951 -0.9504 0.0005 30 1 5.9484 -1.1462 0.0021 31 1 7.3484 0.8785 0.0023 32 1 6.2970 3.1038 0.0001 33 1 3.6401 6.2349 -0.3532 34 1 2.8433 7.3963 0.7348 35 1 4.3186 6.5508 1.2619 36 1 0.6316 8.4094 2.2780 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851086350.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:30 Heat of formation + Delta-G solvation = -119.163092 kcal Electronic energy + Delta-G solvation = -20007.160496 eV Core-core repulsion = 16842.193812 eV Total energy + Delta-G solvation = -3164.966684 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.36997 -40.01723 -38.67815 -37.70492 -35.99185 -33.07692 -32.78102 -31.21423 -28.31587 -27.33649 -26.60153 -25.62852 -23.55626 -22.71556 -21.54209 -19.12509 -18.32435 -18.09190 -17.82919 -17.36582 -16.98727 -16.76892 -16.39403 -15.71281 -15.50654 -15.30088 -14.76235 -14.61268 -14.09953 -13.74585 -13.65113 -13.14909 -13.07089 -12.91329 -12.76279 -12.70961 -12.65345 -12.35146 -12.20991 -12.07467 -11.68370 -11.25619 -11.17918 -10.96507 -10.58501 -9.88280 -9.65898 -8.23923 -6.38024 0.02366 0.28535 1.26367 1.40886 1.42265 1.50527 1.92945 2.40763 2.55700 2.75508 3.06089 3.68022 3.86790 3.97862 4.06423 4.18692 4.20106 4.40901 4.47546 4.51281 4.54866 4.61151 4.71786 4.76881 4.83205 4.95578 4.98735 5.27095 5.33415 5.36760 5.43911 5.47454 5.64325 5.81480 5.95158 6.00035 6.05255 6.67725 7.00119 7.31092 8.82218 Molecular weight = 264.12amu Principal moments of inertia in cm(-1) A = 0.020496 B = 0.005772 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.795635 B = 4849.659178 C = 5553.310893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.395 6.395 3 C 0.108 3.892 4 C -0.117 4.117 5 C -0.093 4.093 6 C -0.113 4.113 7 C -0.101 4.101 8 C -0.135 4.135 9 C 0.057 3.943 10 O -0.304 6.304 11 C 0.471 3.529 12 O -0.525 6.525 13 C 0.056 3.944 14 H 0.054 0.946 15 C -0.123 4.123 16 C -0.542 4.542 17 H 0.055 0.945 18 C 0.027 3.973 19 N -0.906 5.906 20 Si 0.963 3.037 21 H -0.274 1.274 22 H -0.272 1.272 23 H -0.275 1.275 24 H 0.038 0.962 25 H 0.053 0.947 26 H 0.115 0.885 27 H 0.035 0.965 28 H 0.071 0.929 29 H 0.148 0.852 30 H 0.168 0.832 31 H 0.167 0.833 32 H 0.136 0.864 33 H 0.049 0.951 34 H 0.081 0.919 35 H 0.030 0.970 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.591 -13.338 -6.933 15.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.314 6.314 3 C 0.032 3.968 4 C -0.118 4.118 5 C -0.110 4.110 6 C -0.131 4.131 7 C -0.118 4.118 8 C -0.153 4.153 9 C 0.016 3.984 10 O -0.221 6.221 11 C 0.318 3.682 12 O -0.412 6.412 13 C 0.037 3.963 14 H 0.072 0.928 15 C -0.181 4.181 16 C -0.580 4.580 17 H 0.073 0.927 18 C -0.174 4.174 19 N -0.544 5.544 20 Si 0.787 3.213 21 H -0.199 1.199 22 H -0.196 1.196 23 H -0.200 1.200 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.134 0.866 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.166 0.834 30 H 0.185 0.815 31 H 0.184 0.816 32 H 0.154 0.846 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.049 0.951 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.684 -13.512 -6.653 15.772 hybrid contribution -0.674 0.790 0.955 1.410 sum 4.011 -12.722 -5.698 14.505 Atomic orbital electron populations 1.23019 0.78925 1.04623 1.00738 1.87741 1.21822 1.26236 1.95579 1.20982 0.90198 0.85478 1.00153 1.20043 0.94624 0.94069 1.03044 1.21125 0.95877 0.96059 0.97989 1.21685 0.92757 1.00429 0.98196 1.21471 1.01949 0.90482 0.97925 1.21464 0.92149 1.00526 1.01208 1.18804 0.92553 0.82787 1.04302 1.84710 1.70476 1.31722 1.35147 1.25425 0.75414 0.87535 0.79855 1.90509 1.53717 1.60286 1.36681 1.18724 0.93854 0.85026 0.98735 0.92821 1.21598 0.98136 1.00721 0.97629 1.21178 1.37165 1.08165 0.91494 0.92678 1.25602 0.94734 0.95221 1.01830 1.69937 1.38041 1.12950 1.33470 0.85541 0.78441 0.77705 0.79582 1.19909 1.19623 1.19994 0.94373 0.92793 0.86643 0.94665 0.91075 0.83412 0.81496 0.81560 0.84646 0.93200 0.90007 0.95062 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 11.01 113.37 1.25 1.76 16 2 O -0.39 -11.73 9.18 -148.98 -1.37 -13.10 16 3 C 0.11 3.74 5.61 71.23 0.40 4.14 16 4 C -0.12 -4.09 5.88 -19.77 -0.12 -4.20 16 5 C -0.09 -2.58 9.37 22.25 0.21 -2.38 16 6 C -0.11 -2.50 10.04 22.29 0.22 -2.27 16 7 C -0.10 -2.34 10.04 22.26 0.22 -2.11 16 8 C -0.14 -4.21 9.99 22.37 0.22 -3.99 16 9 C 0.06 2.13 4.93 22.51 0.11 2.24 16 10 O -0.30 -12.98 9.44 4.48 0.04 -12.94 16 11 C 0.47 23.01 6.33 71.23 0.45 23.46 16 12 O -0.53 -28.17 15.21 21.94 0.33 -27.84 16 13 C 0.06 2.88 2.74 -12.28 -0.03 2.84 16 14 H 0.05 2.86 8.14 -2.38 -0.02 2.84 16 15 C -0.12 -5.83 8.90 71.98 0.64 -5.19 16 16 C -0.54 -30.88 8.38 25.60 0.21 -30.67 16 17 H 0.05 3.31 6.76 -2.91 -0.02 3.29 16 18 C 0.03 1.46 5.30 84.66 0.45 1.90 16 19 N -0.91 -49.77 11.32 21.45 0.24 -49.53 16 20 Si 0.96 43.66 29.54 68.60 2.03 45.68 16 21 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 24 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.04 1.42 7.56 -2.39 -0.02 1.40 16 28 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.15 3.68 7.00 -2.91 -0.02 3.66 16 30 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 31 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.14 3.93 8.06 -2.91 -0.02 3.90 16 33 H 0.05 2.06 8.11 -2.39 -0.02 2.04 16 34 H 0.08 4.15 6.07 -2.39 -0.01 4.13 16 35 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -66.14 311.38 6.59 -59.54 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 1.07 Total: 12.63 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 4.24 Total: -14.46 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 0.24 Total: -49.53 kcal Atomic # 8 Polarization: -52.88 SS G_CDS: -0.99 Total: -53.87 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -66.14 6.59 -59.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851086350.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.619 kcal (2) G-P(sol) polarization free energy of solvation -66.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds