Wall clock time and date at job start Mon Mar 30 2020 06:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50694 * 109.47189 * 2 1 4 4 C 1.33158 * 119.99965 * 124.99932 * 3 2 1 5 5 F 1.35106 * 119.99745 * 0.02562 * 4 3 2 6 6 C 1.47241 * 120.00071 * 180.02562 * 4 3 2 7 7 O 1.21609 * 120.00064 * 0.02562 * 6 4 3 8 8 N 1.34773 * 119.99708 * 180.02562 * 6 4 3 9 9 C 1.39154 * 119.99732 * 185.53683 * 8 6 4 10 10 C 1.39711 * 119.57902 * 174.99256 * 9 8 6 11 11 C 1.38640 * 119.49509 * 179.97438 * 10 9 8 12 12 C 1.38350 * 118.67251 * 359.72875 * 11 10 9 13 13 C 1.40587 * 119.13424 * 0.53248 * 12 11 10 14 14 C 1.41335 * 119.78370 * 179.73204 * 13 12 11 15 15 H 1.08001 * 120.00438 * 5.86257 * 14 13 12 16 16 C 1.40030 * 119.99682 * 185.87088 * 14 13 12 17 17 N 1.30748 * 119.99778 * 5.91978 * 16 14 13 18 18 Si 1.86802 * 119.99923 * 185.92530 * 16 14 13 19 19 H 1.48502 * 109.46813 * 264.99795 * 18 16 14 20 20 H 1.48498 * 109.47215 * 24.99795 * 18 16 14 21 21 H 1.48502 * 109.46858 * 144.99866 * 18 16 14 22 22 N 1.31918 * 119.57952 * 354.97591 * 9 8 6 23 23 H 1.09007 * 109.47216 * 59.99842 * 1 2 3 24 24 H 1.09005 * 109.47626 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47322 * 300.00043 * 1 2 3 26 26 H 1.09005 * 109.46959 * 240.00260 * 2 1 3 27 27 H 1.08998 * 109.47115 * 120.00336 * 2 1 3 28 28 H 1.07995 * 120.00164 * 305.00313 * 3 2 1 29 29 H 0.96996 * 120.00445 * 5.53990 * 8 6 4 30 30 H 1.08004 * 120.24782 * 359.95534 * 10 9 8 31 31 H 1.07994 * 120.66212 * 180.02562 * 11 10 9 32 32 H 1.07998 * 120.43527 * 180.28640 * 12 11 10 33 33 H 0.97004 * 119.99308 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8778 1.8280 0.9446 5 9 3.2857 0.9672 1.9028 6 6 3.3682 3.2163 0.9450 7 8 3.0007 3.9912 0.0828 8 7 4.2244 3.6283 1.9008 9 6 4.5980 4.9669 1.9702 10 6 5.4017 5.4048 3.0258 11 6 5.7734 6.7388 3.0929 12 6 5.3377 7.5999 2.1016 13 6 4.5263 7.0996 1.0683 14 6 4.0688 7.9683 0.0516 15 1 4.4183 8.9896 0.0163 16 6 3.1623 7.5049 -0.9097 17 7 2.6500 6.3068 -0.8013 18 14 2.6849 8.5983 -2.3471 19 1 1.4278 9.3199 -2.0239 20 1 3.7683 9.5813 -2.6024 21 1 2.4791 7.7630 -3.5574 22 7 4.1890 5.8063 1.0383 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.7065 2.1087 -0.7661 29 1 4.5803 2.9917 2.5403 30 1 5.7308 4.7094 3.7838 31 1 6.3945 7.0975 3.9002 32 1 5.6141 8.6437 2.1233 33 1 2.0223 5.9857 -1.4675 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922157459.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:49 Heat of formation + Delta-G solvation = -17.075671 kcal Electronic energy + Delta-G solvation = -19461.732521 eV Core-core repulsion = 16210.025126 eV Total energy + Delta-G solvation = -3251.707395 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 264.101 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.71344 -39.32223 -37.57813 -35.10085 -34.12730 -33.05285 -30.47395 -30.18830 -28.99967 -25.73208 -24.54165 -22.27200 -21.36454 -20.24245 -19.24983 -18.14522 -16.99459 -16.42192 -15.77082 -15.58542 -14.70708 -14.47807 -14.28558 -14.05485 -13.90205 -13.54986 -13.03963 -12.83742 -12.75858 -12.30639 -12.08452 -11.95579 -11.34604 -11.20204 -11.10480 -10.96822 -10.68615 -10.51947 -10.01083 -9.74466 -9.27214 -9.06717 -8.86437 -8.02479 -7.30613 -7.03000 -6.23579 -4.42210 1.47295 2.79003 3.06848 3.15620 3.18365 3.24731 3.56750 3.91003 4.03856 4.60497 4.80828 4.88441 4.96687 5.19625 5.39427 5.54477 5.74000 5.83520 5.98490 6.06670 6.08335 6.23227 6.44174 6.53047 6.66039 6.81396 6.83088 7.19187 7.51054 7.55917 7.77711 7.98454 8.13660 8.39379 8.67208 8.97474 9.06209 10.17506 10.43323 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.017100 B = 0.006883 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.068674 B = 4066.837120 C = 5616.856058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 C -0.126 4.126 4 C 0.003 3.997 5 F -0.146 7.146 6 C 0.505 3.495 7 O -0.392 6.392 8 N -0.657 5.657 9 C 0.370 3.630 10 C -0.352 4.352 11 C -0.036 4.036 12 C -0.303 4.303 13 C 0.273 3.727 14 C -0.426 4.426 15 H 0.084 0.916 16 C 0.061 3.939 17 N -0.664 5.664 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.262 1.262 21 H -0.277 1.277 22 N -0.476 5.476 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.151 0.849 29 H 0.404 0.596 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.528 -10.189 1.013 10.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.137 4.137 3 C -0.147 4.147 4 C -0.019 4.019 5 F -0.126 7.126 6 C 0.286 3.714 7 O -0.256 6.256 8 N -0.304 5.304 9 C 0.132 3.868 10 C -0.378 4.378 11 C -0.060 4.060 12 C -0.326 4.326 13 C 0.148 3.852 14 C -0.457 4.457 15 H 0.102 0.898 16 C -0.168 4.168 17 N -0.283 5.283 18 Si 0.722 3.278 19 H -0.197 1.197 20 H -0.186 1.186 21 H -0.202 1.202 22 N -0.195 5.195 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.169 0.831 29 H 0.238 0.762 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.529 -10.096 -0.425 10.704 hybrid contribution 0.639 0.196 0.705 0.971 sum -2.890 -9.900 0.280 10.317 Atomic orbital electron populations 1.21696 0.94380 1.01753 1.02545 1.20623 0.96724 0.93113 1.03243 1.23854 0.94769 0.98647 0.97429 1.20331 1.02244 0.88699 0.90661 1.91412 1.89432 1.69139 1.62578 1.18529 0.81957 0.86480 0.84463 1.91271 1.51850 1.50460 1.32024 1.43224 1.45927 1.08554 1.32695 1.18538 0.92114 0.84170 0.92021 1.20502 1.15972 0.97074 1.04268 1.20571 0.96216 0.92783 0.96405 1.21644 1.11424 0.98977 1.00539 1.18364 0.88084 0.88058 0.90690 1.19583 1.20917 0.97578 1.07583 0.89829 1.26144 0.96314 0.95340 0.98997 1.70238 1.15461 1.13158 1.29420 0.86472 0.79587 0.80757 0.80973 1.19720 1.18635 1.20208 1.68599 1.25099 1.02584 1.23260 0.92171 0.92349 0.92413 0.90082 0.90837 0.83104 0.76165 0.88900 0.88455 0.88414 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.89 37.16 0.37 -1.03 16 2 C -0.10 -1.08 6.35 -27.89 -0.18 -1.26 16 3 C -0.13 -1.80 9.10 -36.08 -0.33 -2.13 16 4 C 0.00 0.05 7.37 -37.69 -0.28 -0.23 16 5 F -0.15 -2.20 15.56 2.25 0.04 -2.16 16 6 C 0.50 10.58 7.73 -12.60 -0.10 10.48 16 7 O -0.39 -9.77 12.09 5.27 0.06 -9.70 16 8 N -0.66 -13.66 5.37 -12.44 -0.07 -13.72 16 9 C 0.37 9.19 7.43 -155.06 -1.15 8.04 16 10 C -0.35 -8.02 9.95 -38.88 -0.39 -8.41 16 11 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 12 C -0.30 -7.62 9.83 -38.65 -0.38 -8.00 16 13 C 0.27 7.67 6.53 -85.00 -0.55 7.12 16 14 C -0.43 -11.67 9.13 -37.73 -0.34 -12.01 16 15 H 0.08 2.14 7.85 -52.49 -0.41 1.72 16 16 C 0.06 1.59 5.48 -17.34 -0.10 1.50 16 17 N -0.66 -18.17 9.17 55.55 0.51 -17.66 16 18 Si 0.90 19.08 29.56 -169.99 -5.03 14.05 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.26 -5.49 7.11 56.52 0.40 -5.08 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 22 N -0.48 -13.43 5.77 -10.27 -0.06 -13.49 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.80 7.04 -51.93 -0.37 0.43 16 28 H 0.15 2.26 7.50 -52.49 -0.39 1.87 16 29 H 0.40 6.84 8.25 -40.82 -0.34 6.50 16 30 H 0.09 1.82 8.06 -52.48 -0.42 1.39 16 31 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 32 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 33 H 0.27 6.93 8.29 -40.82 -0.34 6.60 16 LS Contribution 293.46 15.07 4.42 4.42 Total: -1.00 -31.14 293.46 -7.55 -38.68 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -3.60 Total: 6.72 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -3.83 Total: -7.14 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.38 Total: -44.88 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.06 Total: -9.70 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.14 -7.55 -38.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922157459.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.609 kcal (2) G-P(sol) polarization free energy of solvation -31.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds