Wall clock time and date at job start Mon Mar 30 2020 06:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.50703 * 109.47248 * 239.99464 * 2 1 3 5 5 H 1.07995 * 120.00107 * 240.00273 * 4 2 1 6 6 C 1.37878 * 119.99714 * 60.00009 * 4 2 1 7 7 N 1.31510 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99765 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47110 * 90.00207 * 8 6 4 10 10 H 1.48501 * 109.47137 * 210.00199 * 8 6 4 11 11 H 1.48496 * 109.47323 * 330.00240 * 8 6 4 12 12 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 13 13 N 1.46901 * 109.46916 * 299.99733 * 12 2 1 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 2 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 13 12 16 16 C 1.33710 * 122.45416 * 269.71110 * 15 14 13 17 17 S 1.70617 * 110.98073 * 179.89137 * 16 15 14 18 18 C 1.75830 * 91.56918 * 0.31097 * 17 16 15 19 19 C 1.43204 * 125.45731 * 179.78570 * 18 17 16 20 20 N 8.78966 * 65.55989 * 87.53041 * 2 1 3 21 21 C 1.36627 * 109.08893 * 359.82619 * 18 17 16 22 22 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 23 23 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 24 24 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 27 27 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 28 28 H 0.97007 * 120.00038 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.46889 * 180.02562 * 12 2 1 30 30 H 1.08995 * 109.47384 * 59.99754 * 12 2 1 31 31 H 1.00901 * 111.00067 * 303.95263 * 13 12 2 32 32 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 33 33 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 34 34 H 1.07997 * 124.50934 * 0.02562 * 16 15 14 35 35 H 1.07996 * 123.36982 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.3449 -2.1619 -4.4122 10 1 2.4874 -0.1406 -5.1120 11 1 3.6309 -1.7569 -3.7118 12 6 2.0399 -0.7213 1.2493 13 7 1.5503 -0.0286 2.4487 14 6 2.0218 -0.6944 3.6704 15 6 1.5001 0.0422 4.8771 16 6 2.1752 1.0413 5.4551 17 16 1.3173 1.6656 6.7912 18 6 0.0082 0.5171 6.5488 19 6 -1.1713 0.4195 7.3551 20 7 -2.1067 0.3448 7.9946 21 6 0.2968 -0.2679 5.4685 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 3.1301 1.4424 0.0005 26 1 1.6767 1.9562 -0.8901 27 1 1.6767 1.9563 0.8899 28 1 0.7095 1.1616 -3.4845 29 1 3.1300 -0.7209 1.2495 30 1 1.6766 -1.7489 1.2494 31 1 1.8198 0.9437 2.4401 32 1 1.6586 -1.7220 3.6874 33 1 3.1116 -0.6939 3.6870 34 1 3.1347 1.4061 5.1194 35 1 -0.3544 -1.0530 5.1138 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922177886.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:17 Heat of formation + Delta-G solvation = 55.798413 kcal Electronic energy + Delta-G solvation = -16943.466792 eV Core-core repulsion = 14261.132631 eV Total energy + Delta-G solvation = -2682.334162 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.90665 -36.94740 -36.39457 -33.71596 -31.21320 -29.93946 -26.54647 -25.58403 -25.21766 -24.52038 -22.90555 -19.55311 -19.17952 -18.41711 -16.61761 -15.98561 -15.34702 -14.65546 -14.56133 -14.41981 -13.92173 -13.66942 -13.30640 -13.01694 -12.85056 -12.65848 -12.25766 -12.10695 -11.94489 -11.69770 -11.13465 -11.05242 -10.96128 -10.63997 -10.60536 -10.19851 -10.07498 -9.40608 -9.15172 -9.01478 -8.68408 -8.59137 -8.30379 -7.76583 -5.92590 -4.03204 0.29556 1.01196 1.65700 2.20695 2.73420 3.15080 3.30434 3.37622 3.39997 3.75911 4.42839 4.80016 4.95912 4.99495 5.27294 5.33026 5.51351 5.61491 5.78106 6.09672 6.23140 6.30372 6.38253 6.69099 6.86383 7.04970 7.14413 7.25930 7.36562 7.44287 7.67311 7.74266 7.81200 7.90917 8.19305 8.33075 8.53946 8.98314 9.62021 11.07833 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.039211 B = 0.003647 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.913412 B = 7675.291966 C = 7867.799644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.069 3.931 3 C -0.132 4.132 4 C -0.508 4.508 5 H 0.052 0.948 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.888 3.112 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.075 3.925 13 N -0.682 5.682 14 C 0.112 3.888 15 C -0.097 4.097 16 C -0.224 4.224 17 S 0.232 5.768 18 C -0.179 4.179 19 C 0.288 3.712 20 N -0.415 5.415 21 C -0.030 4.030 22 H 0.020 0.980 23 H 0.073 0.927 24 H 0.018 0.982 25 H 0.018 0.982 26 H 0.083 0.917 27 H 0.011 0.989 28 H 0.258 0.742 29 H 0.014 0.986 30 H 0.058 0.942 31 H 0.339 0.661 32 H 0.080 0.920 33 H 0.035 0.965 34 H 0.172 0.828 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.521 1.171 15.857 16.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.068 3.932 3 C -0.190 4.190 4 C -0.547 4.547 5 H 0.070 0.930 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.716 3.284 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.201 1.201 12 C -0.053 4.053 13 N -0.314 5.314 14 C -0.019 4.019 15 C -0.110 4.110 16 C -0.363 4.363 17 S 0.500 5.500 18 C -0.299 4.299 19 C -0.028 4.028 20 N -0.093 5.093 21 C -0.067 4.067 22 H 0.039 0.961 23 H 0.092 0.908 24 H 0.037 0.963 25 H 0.038 0.962 26 H 0.102 0.898 27 H 0.030 0.970 28 H 0.068 0.932 29 H 0.033 0.967 30 H 0.076 0.924 31 H 0.158 0.842 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.189 0.811 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.705 2.039 17.755 17.953 hybrid contribution 1.471 -1.335 -2.309 3.046 sum 3.176 0.704 15.446 15.784 Atomic orbital electron populations 1.21641 0.97360 0.98585 1.00112 1.18093 0.93229 0.91957 0.89902 1.21834 0.97651 0.99196 1.00321 1.21107 1.31179 1.11886 0.90484 0.92984 1.24883 0.95027 0.94951 0.98699 1.69832 1.36784 1.22734 1.22929 0.86664 0.79184 0.79464 0.83043 1.20788 1.21349 1.20111 1.22186 0.95564 0.97917 0.89657 1.60657 1.63627 1.06472 1.00628 1.20628 0.96581 0.97631 0.87055 1.18728 0.94694 0.98382 0.99213 1.25256 1.06207 1.02568 1.02252 1.83059 1.08281 1.31800 1.26862 1.20299 0.97744 1.08436 1.03440 1.24301 0.91838 0.93844 0.92774 1.81268 1.10305 1.08095 1.09594 1.20672 0.96073 0.98409 0.91564 0.96065 0.90793 0.96307 0.96243 0.89830 0.97046 0.93179 0.96744 0.92379 0.84196 0.90202 0.94707 0.81061 0.82725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.83 8.09 37.16 0.30 -2.53 16 2 C 0.07 1.60 0.57 -155.66 -0.09 1.51 16 3 C -0.13 -3.00 7.92 37.16 0.29 -2.71 16 4 C -0.51 -13.31 8.01 -34.44 -0.28 -13.59 16 5 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.88 -24.08 9.35 55.43 0.52 -23.56 16 8 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 C 0.07 1.46 4.59 -3.82 -0.02 1.44 16 13 N -0.68 -10.96 5.70 -115.05 -0.66 -11.62 16 14 C 0.11 1.40 5.93 -4.97 -0.03 1.37 16 15 C -0.10 -1.04 5.30 -106.44 -0.56 -1.60 16 16 C -0.22 -2.01 10.67 29.14 0.31 -1.70 16 17 S 0.23 1.90 23.07 -107.50 -2.48 -0.58 16 18 C -0.18 -1.84 6.32 -38.24 -0.24 -2.08 16 19 C 0.29 3.44 15.82 -22.49 -0.36 3.08 16 20 N -0.41 -5.75 18.53 41.82 0.78 -4.98 16 21 C -0.03 -0.32 10.03 -40.39 -0.41 -0.73 16 22 H 0.02 0.46 7.60 -51.93 -0.39 0.06 16 23 H 0.07 1.94 6.07 -51.93 -0.32 1.63 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 27 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 28 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.34 5.43 6.76 -39.29 -0.27 5.16 16 32 H 0.08 0.97 8.13 -51.93 -0.42 0.55 16 33 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 34 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 309.97 15.07 4.67 4.67 Total: -1.00 -27.78 309.97 -7.91 -35.69 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -4.55 Total: 0.54 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -1.16 Total: -15.89 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.64 Total: -40.16 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.48 Total: -0.58 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.78 -7.91 -35.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922177886.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.485 kcal (2) G-P(sol) polarization free energy of solvation -27.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds