Wall clock time and date at job start Mon Mar 30 2020 06:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.50703 * 109.47248 * 239.99464 * 2 1 3 5 5 H 1.07995 * 120.00107 * 240.00273 * 4 2 1 6 6 C 1.37878 * 119.99714 * 60.00009 * 4 2 1 7 7 N 1.31510 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99765 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47110 * 90.00207 * 8 6 4 10 10 H 1.48501 * 109.47137 * 210.00199 * 8 6 4 11 11 H 1.48496 * 109.47323 * 330.00240 * 8 6 4 12 12 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 13 13 N 1.46901 * 109.46916 * 299.99733 * 12 2 1 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 2 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 13 12 16 16 C 1.33710 * 122.45416 * 269.71110 * 15 14 13 17 17 S 1.70617 * 110.98073 * 179.89137 * 16 15 14 18 18 C 1.75830 * 91.56918 * 0.31097 * 17 16 15 19 19 C 1.43204 * 125.45731 * 179.78570 * 18 17 16 20 20 N 8.78966 * 65.55989 * 87.53041 * 2 1 3 21 21 C 1.36627 * 109.08893 * 359.82619 * 18 17 16 22 22 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 23 23 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 24 24 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 27 27 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 28 28 H 0.97007 * 120.00038 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.46889 * 180.02562 * 12 2 1 30 30 H 1.08995 * 109.47384 * 59.99754 * 12 2 1 31 31 H 1.00901 * 111.00067 * 303.95263 * 13 12 2 32 32 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 33 33 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 34 34 H 1.07997 * 124.50934 * 0.02562 * 16 15 14 35 35 H 1.07996 * 123.36982 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.3449 -2.1619 -4.4122 10 1 2.4874 -0.1406 -5.1120 11 1 3.6309 -1.7569 -3.7118 12 6 2.0399 -0.7213 1.2493 13 7 1.5503 -0.0286 2.4487 14 6 2.0218 -0.6944 3.6704 15 6 1.5001 0.0422 4.8771 16 6 2.1752 1.0413 5.4551 17 16 1.3173 1.6656 6.7912 18 6 0.0082 0.5171 6.5488 19 6 -1.1713 0.4195 7.3551 20 7 -2.1067 0.3448 7.9946 21 6 0.2968 -0.2679 5.4685 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 3.1301 1.4424 0.0005 26 1 1.6767 1.9562 -0.8901 27 1 1.6767 1.9563 0.8899 28 1 0.7095 1.1616 -3.4845 29 1 3.1300 -0.7209 1.2495 30 1 1.6766 -1.7489 1.2494 31 1 1.8198 0.9437 2.4401 32 1 1.6586 -1.7220 3.6874 33 1 3.1116 -0.6939 3.6870 34 1 3.1347 1.4061 5.1194 35 1 -0.3544 -1.0530 5.1138 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922177886.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:17 Heat of formation + Delta-G solvation = 40.775062 kcal Electronic energy + Delta-G solvation = -16944.118254 eV Core-core repulsion = 14261.132631 eV Total energy + Delta-G solvation = -2682.985623 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 264.099 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.78514 -38.36072 -37.53630 -35.21409 -32.87821 -30.98198 -27.64622 -27.44392 -27.18252 -25.59712 -24.23081 -20.53854 -20.12525 -19.91373 -17.83370 -17.44097 -16.87767 -16.15763 -15.67932 -15.48281 -15.13228 -14.91944 -14.36917 -14.23873 -14.06691 -13.90359 -13.69833 -13.28959 -13.20070 -12.96187 -12.83540 -12.66186 -12.46705 -12.34539 -12.05202 -12.02279 -11.74577 -11.24881 -10.89807 -10.54366 -10.30438 -9.79353 -9.38428 -9.02940 -7.92998 -6.09605 -0.47639 0.27001 0.93198 1.37447 1.44379 1.47145 1.54614 1.82383 2.25941 2.49572 2.90817 3.29345 3.70476 4.08014 4.18637 4.44439 4.61342 4.63962 4.76691 4.83380 4.86973 4.95803 5.10950 5.24262 5.28536 5.35855 5.47691 5.49500 5.60275 5.74592 5.82958 6.23405 6.32237 6.35891 6.40966 6.54805 6.72970 7.01369 7.58152 9.04722 Molecular weight = 264.10amu Principal moments of inertia in cm(-1) A = 0.039211 B = 0.003647 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.913412 B = 7675.291966 C = 7867.799644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.058 3.942 3 C -0.120 4.120 4 C -0.525 4.525 5 H 0.046 0.954 6 C 0.022 3.978 7 N -0.903 5.903 8 Si 0.942 3.058 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.271 1.271 12 C 0.090 3.910 13 N -0.686 5.686 14 C 0.116 3.884 15 C -0.116 4.116 16 C -0.213 4.213 17 S 0.292 5.708 18 C -0.201 4.201 19 C 0.306 3.694 20 N -0.457 5.457 21 C -0.032 4.032 22 H 0.035 0.965 23 H 0.044 0.956 24 H 0.009 0.991 25 H 0.018 0.982 26 H 0.052 0.948 27 H 0.035 0.965 28 H 0.256 0.744 29 H 0.014 0.986 30 H 0.050 0.950 31 H 0.340 0.660 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.193 0.807 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.812 1.491 16.937 17.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.058 3.942 3 C -0.178 4.178 4 C -0.564 4.564 5 H 0.064 0.936 6 C -0.177 4.177 7 N -0.543 5.543 8 Si 0.769 3.231 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.196 1.196 12 C -0.039 4.039 13 N -0.318 5.318 14 C -0.015 4.015 15 C -0.129 4.129 16 C -0.353 4.353 17 S 0.561 5.439 18 C -0.322 4.322 19 C -0.008 4.008 20 N -0.136 5.136 21 C -0.069 4.069 22 H 0.054 0.946 23 H 0.063 0.937 24 H 0.028 0.972 25 H 0.038 0.962 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.160 0.840 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.210 0.790 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.999 2.357 18.854 19.236 hybrid contribution 1.116 -1.392 -2.594 3.148 sum 4.115 0.965 16.260 16.801 Atomic orbital electron populations 1.21471 0.97929 0.97662 0.99280 1.18155 0.92742 0.92477 0.90863 1.21653 0.97478 0.98748 0.99962 1.21479 1.31026 1.11900 0.91980 0.93552 1.25523 0.95416 0.95651 1.01140 1.69973 1.37526 1.23640 1.23136 0.85816 0.78746 0.78412 0.80140 1.20773 1.21295 1.19613 1.21808 0.95261 0.97206 0.89599 1.60550 1.63948 1.06502 1.00815 1.20600 0.97301 0.97566 0.85997 1.18520 0.95301 0.99678 0.99373 1.25594 1.06650 1.01242 1.01801 1.82951 1.06066 1.29630 1.25261 1.20391 0.98166 1.09936 1.03681 1.24505 0.91638 0.92659 0.92024 1.81279 1.11559 1.09603 1.11121 1.20707 0.96162 0.98462 0.91595 0.94622 0.93670 0.97184 0.96235 0.92922 0.94570 0.93464 0.96798 0.93117 0.84025 0.90200 0.93497 0.79011 0.82818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.00 8.09 71.98 0.58 -4.41 16 2 C 0.06 2.67 0.57 -52.93 -0.03 2.64 16 3 C -0.12 -5.37 7.92 71.98 0.57 -4.80 16 4 C -0.53 -27.49 8.01 25.60 0.21 -27.28 16 5 H 0.05 2.42 7.74 -2.91 -0.02 2.39 16 6 C 0.02 1.15 5.15 84.66 0.44 1.59 16 7 N -0.90 -49.73 9.35 21.45 0.20 -49.53 16 8 Si 0.94 42.58 29.54 68.60 2.03 44.61 16 9 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 10 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 C 0.09 3.39 4.59 86.30 0.40 3.79 16 13 N -0.69 -20.65 5.70 -517.92 -2.95 -23.60 16 14 C 0.12 2.62 5.93 85.55 0.51 3.12 16 15 C -0.12 -2.18 5.30 -21.04 -0.11 -2.29 16 16 C -0.21 -3.08 10.67 66.79 0.71 -2.37 16 17 S 0.29 3.86 23.07 -56.49 -1.30 2.56 16 18 C -0.20 -3.76 6.32 23.14 0.15 -3.61 16 19 C 0.31 7.03 15.82 88.34 1.40 8.42 16 20 N -0.46 -12.54 18.53 19.00 0.35 -12.19 16 21 C -0.03 -0.62 10.03 21.75 0.22 -0.40 16 22 H 0.03 1.53 7.60 -2.39 -0.02 1.51 16 23 H 0.04 2.39 6.07 -2.39 -0.01 2.37 16 24 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 25 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.05 2.68 6.07 -2.39 -0.01 2.67 16 27 H 0.04 1.39 6.57 -2.39 -0.02 1.37 16 28 H 0.26 13.63 8.31 -92.70 -0.77 12.86 16 29 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.34 10.00 6.76 -89.69 -0.61 9.40 16 32 H 0.08 1.80 8.13 -2.39 -0.02 1.78 16 33 H 0.05 0.96 8.12 -2.39 -0.02 0.95 16 34 H 0.19 1.98 8.06 -2.91 -0.02 1.95 16 35 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -59.17 309.97 3.85 -55.33 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 0.49 Total: 8.43 kcal Atomic # 6 Polarization: -30.64 SS G_CDS: 5.03 Total: -25.61 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -2.40 Total: -85.32 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 16 Polarization: 3.86 SS G_CDS: -1.30 Total: 2.56 kcal Total: -59.17 3.85 -55.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922177886.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.102 kcal (2) G-P(sol) polarization free energy of solvation -59.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds