Wall clock time and date at job start Mon Mar 30 2020 06:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00393 * 2 1 4 4 H 1.48502 * 109.47157 * 269.99984 * 3 2 1 5 5 H 1.48505 * 109.47047 * 29.99092 * 3 2 1 6 6 H 1.48494 * 109.47736 * 149.99332 * 3 2 1 7 7 C 1.37880 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99560 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00128 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47056 * 179.97438 * 9 7 2 11 11 O 1.45198 * 109.47161 * 180.02562 * 10 9 7 12 12 C 1.34809 * 117.00211 * 180.02562 * 11 10 9 13 13 O 1.21552 * 120.00273 * 359.97438 * 12 11 10 14 14 C 1.47007 * 120.00272 * 180.02562 * 12 11 10 15 15 C 1.38489 * 126.89888 * 180.15884 * 14 12 11 16 16 C 1.39635 * 105.35787 * 180.26142 * 15 14 12 17 17 N 1.30879 * 107.88198 * 359.74314 * 16 15 14 18 18 N 1.28448 * 110.94189 * 359.97438 * 17 16 15 19 19 C 1.46497 * 125.19689 * 179.97438 * 18 17 16 20 20 C 1.53786 * 113.61643 * 320.89068 * 19 18 17 21 21 C 1.53962 * 87.01719 * 89.22773 * 20 19 18 22 22 C 1.53781 * 113.61305 * 58.49916 * 19 18 17 23 23 H 0.96999 * 119.99686 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.46835 * 60.00161 * 9 7 2 25 25 H 1.08999 * 109.47064 * 300.00000 * 9 7 2 26 26 H 1.09006 * 109.47274 * 60.00392 * 10 9 7 27 27 H 1.08999 * 109.47317 * 300.00008 * 10 9 7 28 28 H 1.07997 * 127.31798 * 0.02562 * 15 14 12 29 29 H 1.08001 * 126.06242 * 179.76167 * 16 15 14 30 30 H 1.09002 * 112.84935 * 189.69396 * 19 18 17 31 31 H 1.08993 * 113.61491 * 203.74894 * 20 19 18 32 32 H 1.09000 * 113.61138 * 334.65232 * 20 19 18 33 33 H 1.08997 * 113.53543 * 270.80998 * 21 20 19 34 34 H 1.08998 * 113.73879 * 139.94595 * 21 20 19 35 35 H 1.09001 * 113.61695 * 25.34675 * 22 19 18 36 36 H 1.08997 * 113.61223 * 156.25258 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5192 -4.9196 -0.0001 12 6 2.2534 -6.0502 0.0004 13 8 3.4673 -5.9867 0.0008 14 6 1.5860 -7.3600 -0.0008 15 6 2.1954 -8.6037 0.0026 16 6 1.1489 -9.5282 -0.0064 17 7 0.0231 -8.8609 -0.0088 18 7 0.2398 -7.5948 -0.0016 19 6 -0.7977 -6.5605 -0.0023 20 6 -2.0011 -6.8956 -0.8992 21 6 -2.6206 -7.5886 0.3282 22 6 -1.7601 -6.6527 1.1935 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 2.8718 -3.6044 0.8906 27 1 2.8719 -3.6044 -0.8894 28 1 3.2547 -8.8137 0.0070 29 1 1.2506 -10.6034 -0.0104 30 1 -0.3975 -5.5597 -0.1645 31 1 -2.5558 -6.0182 -1.2315 32 1 -1.7617 -7.5797 -1.7134 33 1 -2.3479 -8.6400 0.4182 34 1 -3.6920 -7.4186 0.4338 35 1 -1.3266 -7.1409 2.0664 36 1 -2.2489 -5.7087 1.4344 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923877687.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:33 Heat of formation + Delta-G solvation = 6.247410 kcal Electronic energy + Delta-G solvation = -19771.096062 eV Core-core repulsion = 16643.860336 eV Total energy + Delta-G solvation = -3127.235726 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.68755 -39.75149 -38.47327 -36.21760 -33.44452 -31.81141 -31.09128 -30.16536 -25.81921 -25.76135 -25.37709 -23.51864 -21.72832 -21.07853 -20.83730 -19.35028 -17.50619 -16.68988 -16.37094 -16.03453 -15.77655 -15.52651 -15.34575 -14.66719 -14.42369 -13.61308 -13.39432 -13.32036 -12.86938 -12.53238 -12.41775 -12.40215 -11.36160 -11.24166 -11.18381 -10.94920 -10.84572 -10.72001 -10.69123 -10.37225 -10.33113 -9.78634 -9.73948 -9.38120 -9.23786 -9.06574 -8.50980 -6.17362 -4.21724 1.11886 2.33166 2.53611 2.93081 3.09476 3.24701 3.31228 3.35390 4.20366 4.33369 4.43466 4.60900 4.72475 4.78542 4.96942 5.19891 5.25279 5.44306 5.56498 5.60389 5.72584 5.81853 5.82417 5.85074 5.91314 5.96542 5.98950 6.18717 6.42905 6.52324 6.72528 6.80368 7.44486 7.51252 7.77187 7.91489 8.08534 8.15975 8.83335 9.43272 10.94094 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.024691 B = 0.004748 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.727225 B = 5896.409491 C = 6882.606264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.025 3.975 10 C 0.074 3.926 11 O -0.357 6.357 12 C 0.533 3.467 13 O -0.498 6.498 14 C -0.019 4.019 15 C -0.158 4.158 16 C -0.013 4.013 17 N -0.267 5.267 18 N -0.240 5.240 19 C 0.102 3.898 20 C -0.137 4.137 21 C -0.139 4.139 22 C -0.140 4.140 23 H 0.264 0.736 24 H 0.028 0.972 25 H 0.029 0.971 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.165 0.835 29 H 0.188 0.812 30 H 0.145 0.855 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.373 -16.314 0.168 16.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.002 3.998 11 O -0.274 6.274 12 C 0.375 3.625 13 O -0.385 6.385 14 C -0.145 4.145 15 C -0.186 4.186 16 C -0.188 4.188 17 N -0.100 5.100 18 N -0.030 5.030 19 C 0.001 3.999 20 C -0.175 4.175 21 C -0.176 4.176 22 C -0.178 4.178 23 H 0.073 0.927 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.182 0.818 29 H 0.205 0.795 30 H 0.163 0.837 31 H 0.122 0.878 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.397 -16.109 0.170 16.699 hybrid contribution 1.531 1.073 0.002 1.869 sum -2.866 -15.035 0.172 15.307 Atomic orbital electron populations 1.69958 1.06096 1.27076 1.49675 1.24964 0.94920 0.99394 0.94736 0.86468 0.79800 0.82746 0.78294 1.20445 1.21022 1.19679 1.20958 0.93232 0.89995 1.52385 0.92189 1.19184 0.94161 0.88982 0.98832 1.23771 0.96555 0.78072 1.01374 1.86550 1.41938 1.15892 1.83027 1.19686 0.85411 0.83749 0.73635 1.90860 1.14051 1.87645 1.45961 1.20894 0.84523 0.93714 1.15323 1.22165 1.01133 0.89342 1.05985 1.23584 0.87721 1.00501 1.06957 1.73098 1.27803 0.90368 1.18762 1.45684 1.04532 1.04262 1.48557 1.23007 0.86983 0.89760 1.00153 1.23245 0.94990 1.01802 0.97472 1.23021 0.99370 1.00178 0.95051 1.23271 0.96516 1.01581 0.96453 0.92665 0.95346 0.95299 0.91925 0.91944 0.81762 0.79507 0.83739 0.87818 0.90522 0.88783 0.91134 0.90833 0.87591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.52 13.29 55.43 0.74 -24.79 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.53 -14.39 9.11 -34.44 -0.31 -14.70 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.64 5.35 -27.88 -0.15 0.49 16 10 C 0.07 1.59 5.42 37.16 0.20 1.79 16 11 O -0.36 -6.88 7.47 -40.79 -0.30 -7.18 16 12 C 0.53 9.77 7.94 34.28 0.27 10.05 16 13 O -0.50 -10.07 16.71 -19.30 -0.32 -10.40 16 14 C -0.02 -0.30 6.96 -82.07 -0.57 -0.87 16 15 C -0.16 -2.08 10.85 -38.97 -0.42 -2.50 16 16 C -0.01 -0.15 12.03 -17.44 -0.21 -0.36 16 17 N -0.27 -3.58 10.11 30.58 0.31 -3.27 16 18 N -0.24 -3.49 3.47 -49.92 -0.17 -3.67 16 19 C 0.10 1.37 4.62 -67.12 -0.31 1.06 16 20 C -0.14 -1.54 7.66 -25.82 -0.20 -1.74 16 21 C -0.14 -1.44 7.67 -25.82 -0.20 -1.64 16 22 C -0.14 -1.63 7.85 -25.92 -0.20 -1.83 16 23 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 28 H 0.16 1.87 8.06 -52.49 -0.42 1.44 16 29 H 0.19 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.15 2.20 5.48 -51.93 -0.28 1.92 16 31 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 1.04 7.09 -51.93 -0.37 0.67 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 310.80 15.07 4.68 4.68 Total: -1.00 -30.24 310.80 -7.14 -37.37 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -4.84 Total: -0.05 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -2.20 Total: -8.63 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.87 Total: -31.72 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.63 Total: -17.58 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.24 -7.14 -37.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923877687.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.621 kcal (2) G-P(sol) polarization free energy of solvation -30.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds