Wall clock time and date at job start Mon Mar 30 2020 06:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00393 * 2 1 4 4 H 1.48502 * 109.47157 * 269.99984 * 3 2 1 5 5 H 1.48505 * 109.47047 * 29.99092 * 3 2 1 6 6 H 1.48494 * 109.47736 * 149.99332 * 3 2 1 7 7 C 1.37880 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99560 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00128 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47056 * 179.97438 * 9 7 2 11 11 O 1.45198 * 109.47161 * 180.02562 * 10 9 7 12 12 C 1.34809 * 117.00211 * 180.02562 * 11 10 9 13 13 O 1.21552 * 120.00273 * 359.97438 * 12 11 10 14 14 C 1.47007 * 120.00272 * 180.02562 * 12 11 10 15 15 C 1.38489 * 126.89888 * 180.15884 * 14 12 11 16 16 C 1.39635 * 105.35787 * 180.26142 * 15 14 12 17 17 N 1.30879 * 107.88198 * 359.74314 * 16 15 14 18 18 N 1.28448 * 110.94189 * 359.97438 * 17 16 15 19 19 C 1.46497 * 125.19689 * 179.97438 * 18 17 16 20 20 C 1.53786 * 113.61643 * 320.89068 * 19 18 17 21 21 C 1.53962 * 87.01719 * 89.22773 * 20 19 18 22 22 C 1.53781 * 113.61305 * 58.49916 * 19 18 17 23 23 H 0.96999 * 119.99686 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.46835 * 60.00161 * 9 7 2 25 25 H 1.08999 * 109.47064 * 300.00000 * 9 7 2 26 26 H 1.09006 * 109.47274 * 60.00392 * 10 9 7 27 27 H 1.08999 * 109.47317 * 300.00008 * 10 9 7 28 28 H 1.07997 * 127.31798 * 0.02562 * 15 14 12 29 29 H 1.08001 * 126.06242 * 179.76167 * 16 15 14 30 30 H 1.09002 * 112.84935 * 189.69396 * 19 18 17 31 31 H 1.08993 * 113.61491 * 203.74894 * 20 19 18 32 32 H 1.09000 * 113.61138 * 334.65232 * 20 19 18 33 33 H 1.08997 * 113.53543 * 270.80998 * 21 20 19 34 34 H 1.08998 * 113.73879 * 139.94595 * 21 20 19 35 35 H 1.09001 * 113.61695 * 25.34675 * 22 19 18 36 36 H 1.08997 * 113.61223 * 156.25258 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5192 -4.9196 -0.0001 12 6 2.2534 -6.0502 0.0004 13 8 3.4673 -5.9867 0.0008 14 6 1.5860 -7.3600 -0.0008 15 6 2.1954 -8.6037 0.0026 16 6 1.1489 -9.5282 -0.0064 17 7 0.0231 -8.8609 -0.0088 18 7 0.2398 -7.5948 -0.0016 19 6 -0.7977 -6.5605 -0.0023 20 6 -2.0011 -6.8956 -0.8992 21 6 -2.6206 -7.5886 0.3282 22 6 -1.7601 -6.6527 1.1935 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8903 26 1 2.8718 -3.6044 0.8906 27 1 2.8719 -3.6044 -0.8894 28 1 3.2547 -8.8137 0.0070 29 1 1.2506 -10.6034 -0.0104 30 1 -0.3975 -5.5597 -0.1645 31 1 -2.5558 -6.0182 -1.2315 32 1 -1.7617 -7.5797 -1.7134 33 1 -2.3479 -8.6400 0.4182 34 1 -3.6920 -7.4186 0.4338 35 1 -1.3266 -7.1409 2.0664 36 1 -2.2489 -5.7087 1.4344 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923877687.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:33 Heat of formation + Delta-G solvation = -9.955117 kcal Electronic energy + Delta-G solvation = -19771.798656 eV Core-core repulsion = 16643.860336 eV Total energy + Delta-G solvation = -3127.938320 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.75492 -41.27604 -39.42926 -37.80034 -35.48108 -32.98577 -32.40690 -31.83457 -27.36325 -26.73737 -26.62688 -25.01558 -22.93657 -22.66052 -22.05523 -20.62634 -18.87331 -18.29696 -17.81485 -17.79857 -16.93613 -16.69266 -16.47837 -16.39976 -15.55956 -15.05249 -14.67871 -14.47215 -14.42369 -14.21308 -13.44005 -13.36303 -13.20678 -13.11837 -12.67505 -12.64246 -12.30697 -11.99461 -11.72536 -11.62208 -11.57909 -11.54878 -11.46147 -11.28301 -10.61955 -10.36526 -10.08753 -8.28124 -6.40617 -0.12557 1.22652 1.40879 1.42413 1.48474 1.50528 1.56795 1.82832 2.39074 3.07001 3.23555 3.34526 3.48259 3.78750 3.83229 3.99830 4.15600 4.17980 4.20618 4.41937 4.59231 4.66285 4.71226 4.75347 4.84331 4.88974 4.97531 5.05158 5.11247 5.27851 5.40890 5.44406 5.46681 5.70441 5.76738 6.04954 6.45518 6.72072 6.97683 7.29138 8.84164 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.024691 B = 0.004748 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.727225 B = 5896.409491 C = 6882.606264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.551 4.551 8 H 0.064 0.936 9 C 0.034 3.966 10 C 0.089 3.911 11 O -0.357 6.357 12 C 0.534 3.466 13 O -0.522 6.522 14 C -0.055 4.055 15 C -0.145 4.145 16 C -0.001 4.001 17 N -0.269 5.269 18 N -0.245 5.245 19 C 0.084 3.916 20 C -0.130 4.130 21 C -0.124 4.124 22 C -0.138 4.138 23 H 0.268 0.732 24 H 0.010 0.990 25 H 0.010 0.990 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.182 0.818 29 H 0.231 0.769 30 H 0.120 0.880 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.279 -17.431 0.159 17.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.189 4.189 3 Si 0.794 3.206 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.589 4.589 8 H 0.082 0.918 9 C -0.003 4.003 10 C 0.016 3.984 11 O -0.274 6.274 12 C 0.378 3.622 13 O -0.411 6.411 14 C -0.180 4.180 15 C -0.174 4.174 16 C -0.176 4.176 17 N -0.103 5.103 18 N -0.035 5.035 19 C -0.017 4.017 20 C -0.168 4.168 21 C -0.162 4.162 22 C -0.176 4.176 23 H 0.077 0.923 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.200 0.800 29 H 0.248 0.752 30 H 0.137 0.863 31 H 0.132 0.868 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.308 -17.241 0.160 17.772 hybrid contribution 1.482 1.300 0.004 1.972 sum -2.826 -15.941 0.163 16.191 Atomic orbital electron populations 1.70069 1.07659 1.28250 1.50268 1.25880 0.95808 1.03144 0.94048 0.85376 0.78594 0.78038 0.78635 1.19627 1.20408 1.18869 1.21351 0.93701 0.91206 1.52635 0.91802 1.18967 0.94220 0.90170 0.96934 1.23323 0.95347 0.78325 1.01375 1.86574 1.41731 1.15717 1.83359 1.20090 0.85284 0.84101 0.72680 1.90835 1.14913 1.87930 1.47396 1.20846 0.85602 0.93017 1.18504 1.22550 1.02425 0.88482 1.03948 1.24305 0.86277 1.02130 1.04862 1.73120 1.28723 0.89872 1.18589 1.45753 1.04084 1.04759 1.48919 1.23127 0.87481 0.88794 1.02258 1.23260 0.93896 1.02233 0.97432 1.22926 1.00251 0.99388 0.93591 1.23292 0.96270 1.02292 0.95710 0.92329 0.97201 0.97167 0.91887 0.91866 0.80029 0.75244 0.86264 0.86794 0.90837 0.89178 0.89085 0.91533 0.86985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.68 13.29 21.45 0.28 -53.40 16 2 C 0.01 0.59 5.46 84.66 0.46 1.05 16 3 Si 0.97 42.79 29.54 68.60 2.03 44.82 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.55 -30.50 9.11 25.60 0.23 -30.27 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.03 1.77 5.35 29.85 0.16 1.93 16 10 C 0.09 3.92 5.42 71.98 0.39 4.31 16 11 O -0.36 -14.25 7.47 -57.21 -0.43 -14.68 16 12 C 0.53 19.94 7.94 70.12 0.56 20.50 16 13 O -0.52 -21.33 16.71 19.67 0.33 -21.00 16 14 C -0.06 -1.73 6.96 40.75 0.28 -1.44 16 15 C -0.15 -3.54 10.85 22.67 0.25 -3.30 16 16 C 0.00 -0.03 12.03 85.17 1.02 0.99 16 17 N -0.27 -6.71 10.11 -57.16 -0.58 -7.29 16 18 N -0.24 -6.99 3.47 -311.85 -1.08 -8.07 16 19 C 0.08 2.29 4.62 45.52 0.21 2.50 16 20 C -0.13 -2.82 7.66 31.18 0.24 -2.58 16 21 C -0.12 -2.38 7.67 31.18 0.24 -2.14 16 22 C -0.14 -3.14 7.85 31.12 0.24 -2.90 16 23 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 24 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.06 2.75 8.14 -2.38 -0.02 2.73 16 27 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 28 H 0.18 3.70 8.06 -2.91 -0.02 3.67 16 29 H 0.23 2.44 8.06 -2.91 -0.02 2.42 16 30 H 0.12 3.83 5.48 -2.39 -0.01 3.81 16 31 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.09 1.83 7.09 -2.39 -0.02 1.81 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -65.08 310.80 5.92 -59.16 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 1.08 Total: 11.80 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: 4.29 Total: -11.34 kcal Atomic # 7 Polarization: -67.38 SS G_CDS: -1.37 Total: -68.75 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -0.10 Total: -35.68 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -65.08 5.92 -59.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923877687.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.202 kcal (2) G-P(sol) polarization free energy of solvation -65.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds