Wall clock time and date at job start Mon Mar 30 2020 06:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 110.54676 * 2 1 4 4 H 1.08003 * 119.99926 * 122.88393 * 3 2 1 5 5 C 1.37875 * 119.99984 * 302.87878 * 3 2 1 6 6 N 1.31508 * 120.00477 * 359.97438 * 5 3 2 7 7 Si 1.86804 * 119.99622 * 180.02562 * 5 3 2 8 8 H 1.48493 * 109.47413 * 59.99692 * 7 5 3 9 9 H 1.48501 * 109.47036 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47054 * 299.99720 * 7 5 3 11 11 C 1.54994 * 110.62071 * 122.87844 * 2 1 3 12 12 C 1.54810 * 102.08883 * 81.63733 * 11 2 1 13 13 C 1.54098 * 104.19075 * 20.87838 * 12 11 2 14 14 C 1.53002 * 109.88062 * 242.45626 * 13 12 11 15 15 C 1.50708 * 109.87612 * 121.45513 * 13 12 11 16 16 C 1.38264 * 119.98226 * 210.30920 * 15 13 12 17 17 C 1.38227 * 120.04889 * 180.02562 * 16 15 13 18 18 C 1.38220 * 120.02461 * 0.02562 * 17 16 15 19 19 C 1.38435 * 119.97640 * 359.97438 * 18 17 16 20 20 F 1.35098 * 120.02795 * 179.72273 * 19 18 17 21 21 C 1.38176 * 119.98614 * 30.32892 * 15 13 12 22 22 O 1.43745 * 107.41935 * 1.95719 * 13 12 11 23 23 H 1.09002 * 109.47273 * 311.61287 * 1 2 3 24 24 H 1.08999 * 109.47797 * 71.61692 * 1 2 3 25 25 H 1.09000 * 109.46905 * 191.61570 * 1 2 3 26 26 H 0.96993 * 120.00330 * 179.97438 * 6 5 3 27 27 H 1.09002 * 110.91033 * 323.43734 * 11 2 1 28 28 H 1.08993 * 110.90830 * 199.83369 * 11 2 1 29 29 H 1.09008 * 110.48836 * 262.19910 * 12 11 2 30 30 H 1.08999 * 110.60332 * 139.61715 * 12 11 2 31 31 H 1.09003 * 109.46914 * 292.18710 * 14 13 12 32 32 H 1.08997 * 109.47246 * 52.18567 * 14 13 12 33 33 H 1.09000 * 109.47103 * 172.19147 * 14 13 12 34 34 H 1.08001 * 119.97935 * 0.03698 * 16 15 13 35 35 H 1.07998 * 119.98662 * 179.97438 * 17 16 15 36 36 H 1.07996 * 120.01275 * 180.02562 * 18 17 16 37 37 H 1.07998 * 120.01443 * 0.02562 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0589 1.4112 0.0000 4 1 2.7240 1.7386 0.7855 5 6 1.6939 2.2842 -1.0028 6 7 0.8846 1.8854 -1.9596 7 14 2.3502 4.0332 -1.0031 8 1 3.8331 4.0054 -1.0737 9 1 1.8116 4.7637 -2.1785 10 1 1.9267 4.7209 0.2431 11 6 2.0758 -0.7875 1.2183 12 6 1.9840 -2.2521 0.7252 13 6 1.9341 -2.1314 -0.8102 14 6 0.6087 -2.6888 -1.3332 15 6 3.0850 -2.8885 -1.4214 16 6 3.6337 -2.4642 -2.6175 17 6 4.6889 -3.1579 -3.1795 18 6 5.1964 -4.2769 -2.5465 19 6 4.6478 -4.7026 -1.3489 20 9 5.1393 -5.7995 -0.7322 21 6 3.5910 -4.0065 -0.7864 22 8 2.0396 -0.7352 -1.1357 23 1 -0.3634 0.6825 0.7683 24 1 -0.3635 0.3241 -0.9752 25 1 -0.3633 -1.0066 0.2069 26 1 0.6275 2.4997 -2.6648 27 1 1.4474 -0.6321 2.0952 28 1 3.1092 -0.5119 1.4283 29 1 1.0762 -2.7248 1.1005 30 1 2.8631 -2.8170 1.0352 31 1 0.5802 -3.7669 -1.1747 32 1 -0.2183 -2.2211 -0.7989 33 1 0.5199 -2.4757 -2.3984 34 1 3.2377 -1.5901 -3.1129 35 1 5.1165 -2.8259 -4.1140 36 1 6.0212 -4.8185 -2.9856 37 1 3.1617 -4.3381 0.1475 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310428310.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:46 Heat of formation + Delta-G solvation = -65.071051 kcal Electronic energy + Delta-G solvation = -20598.542849 eV Core-core repulsion = 17448.294562 eV Total energy + Delta-G solvation = -3150.248288 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 264.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.70566 -39.74514 -37.83390 -33.50529 -31.85023 -31.17229 -30.07718 -28.99365 -28.10675 -25.21784 -23.53207 -22.90399 -21.80214 -19.51987 -19.32444 -17.29789 -16.46117 -15.84122 -15.76218 -15.41466 -14.86667 -14.47939 -14.25618 -13.75083 -13.67196 -13.19639 -12.87240 -12.59197 -12.29748 -11.98319 -11.80673 -11.50804 -11.39504 -10.98711 -10.94040 -10.74509 -10.68544 -10.59873 -10.32214 -10.07599 -9.78631 -9.51326 -8.97139 -8.71359 -8.54333 -8.34418 -8.13510 -6.01642 -4.16421 1.46521 1.47008 3.29951 3.34671 3.37625 3.88522 4.37682 4.39686 4.79319 4.98758 5.12865 5.26954 5.39660 5.55020 5.57996 5.62643 5.64291 5.91062 6.03530 6.11112 6.18939 6.27873 6.30805 6.37028 6.49121 6.54004 6.64297 6.72075 6.77228 6.79895 6.92636 6.97632 7.19691 7.20257 7.25438 7.74454 8.06170 8.30443 8.55371 8.94084 9.53876 11.01296 Molecular weight = 264.13amu Principal moments of inertia in cm(-1) A = 0.025434 B = 0.006165 C = 0.005646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.634623 B = 4540.693271 C = 4958.451884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.232 3.768 3 C -0.520 4.520 4 H 0.062 0.938 5 C 0.081 3.919 6 N -0.862 5.862 7 Si 0.890 3.110 8 H -0.276 1.276 9 H -0.286 1.286 10 H -0.276 1.276 11 C -0.141 4.141 12 C -0.149 4.149 13 C 0.130 3.870 14 C -0.160 4.160 15 C -0.030 4.030 16 C -0.098 4.098 17 C -0.097 4.097 18 C -0.165 4.165 19 C 0.086 3.914 20 F -0.148 7.148 21 C -0.155 4.155 22 O -0.336 6.336 23 H 0.038 0.962 24 H 0.086 0.914 25 H 0.018 0.982 26 H 0.261 0.739 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.140 0.860 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.932 -10.303 0.064 10.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.195 3.805 3 C -0.557 4.557 4 H 0.080 0.920 5 C -0.124 4.124 6 N -0.498 5.498 7 Si 0.718 3.282 8 H -0.201 1.201 9 H -0.212 1.212 10 H -0.202 1.202 11 C -0.179 4.179 12 C -0.187 4.187 13 C 0.089 3.911 14 C -0.217 4.217 15 C -0.031 4.031 16 C -0.117 4.117 17 C -0.115 4.115 18 C -0.184 4.184 19 C 0.067 3.933 20 F -0.126 7.126 21 C -0.173 4.173 22 O -0.256 6.256 23 H 0.057 0.943 24 H 0.105 0.895 25 H 0.037 0.963 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.158 0.842 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.925 -10.195 -0.279 10.610 hybrid contribution 0.435 0.603 0.244 0.782 sum 3.359 -9.592 -0.035 10.163 Atomic orbital electron populations 1.22293 0.97923 0.96839 1.03591 1.20057 0.90455 0.90324 0.79672 1.20854 1.30779 0.93334 1.10773 0.92000 1.25006 0.94114 0.98324 0.94996 1.69957 1.32707 1.35142 1.11962 0.86702 0.79513 0.84508 0.77505 1.20134 1.21195 1.20161 1.23164 1.01265 0.93270 1.00162 1.23131 1.01296 0.99016 0.95244 1.20645 0.90691 0.87156 0.92594 1.22471 0.97536 0.99304 1.02400 1.19905 0.95714 0.93309 0.94141 1.21267 0.95492 0.99630 0.95267 1.21030 0.96376 0.94324 0.99767 1.21030 1.02407 0.99563 0.95407 1.17610 0.96392 0.85903 0.93364 1.91454 1.87105 1.51498 1.82568 1.21024 0.97472 0.97212 1.01634 1.89324 1.83772 1.10552 1.41926 0.94259 0.89520 0.96326 0.92938 0.92123 0.91901 0.91658 0.91577 0.93432 0.90751 0.92119 0.84206 0.85333 0.85438 0.84811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 7.57 37.16 0.28 -3.16 16 2 C 0.23 5.60 0.74 -90.72 -0.07 5.53 16 3 C -0.52 -14.01 8.32 -34.44 -0.29 -14.29 16 4 H 0.06 1.65 7.77 -52.48 -0.41 1.24 16 5 C 0.08 2.19 5.29 -17.82 -0.09 2.10 16 6 N -0.86 -23.85 11.19 55.43 0.62 -23.23 16 7 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 8 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 9 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 C -0.14 -2.90 6.03 -24.72 -0.15 -3.05 16 12 C -0.15 -2.66 5.27 -25.20 -0.13 -2.79 16 13 C 0.13 2.51 0.95 -91.19 -0.09 2.43 16 14 C -0.16 -2.81 8.26 37.16 0.31 -2.51 16 15 C -0.03 -0.54 4.86 -104.63 -0.51 -1.05 16 16 C -0.10 -1.71 9.36 -39.58 -0.37 -2.08 16 17 C -0.10 -1.39 10.04 -39.59 -0.40 -1.79 16 18 C -0.17 -2.29 10.03 -39.52 -0.40 -2.69 16 19 C 0.09 1.31 7.30 -39.42 -0.29 1.02 16 20 F -0.15 -2.20 17.27 2.25 0.04 -2.16 16 21 C -0.15 -2.46 8.71 -39.51 -0.34 -2.80 16 22 O -0.34 -8.12 9.21 -35.23 -0.32 -8.44 16 23 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 24 H 0.09 2.22 6.40 -51.93 -0.33 1.88 16 25 H 0.02 0.37 5.07 -51.93 -0.26 0.11 16 26 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 28 H 0.06 1.32 8.04 -51.93 -0.42 0.91 16 29 H 0.06 1.04 7.70 -51.92 -0.40 0.64 16 30 H 0.07 1.08 5.77 -51.93 -0.30 0.78 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.33 5.03 -51.93 -0.26 1.07 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.14 2.64 7.55 -52.49 -0.40 2.24 16 35 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.13 1.93 6.45 -52.49 -0.34 1.59 16 LS Contribution 297.90 15.07 4.49 4.49 Total: -1.00 -28.10 297.90 -7.51 -35.61 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -4.78 Total: 3.08 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: -2.53 Total: -25.13 kcal Atomic # 7 Polarization: -23.85 SS G_CDS: 0.62 Total: -23.23 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -0.32 Total: -8.44 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.10 -7.51 -35.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310428310.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.457 kcal (2) G-P(sol) polarization free energy of solvation -28.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds