Wall clock time and date at job start Mon Mar 30 2020 06:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99500 * 2 1 4 4 H 1.48501 * 109.46903 * 239.99992 * 3 2 1 5 5 H 1.48494 * 109.47562 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47174 * 120.00372 * 3 2 1 7 7 C 1.37873 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99687 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00228 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47297 * 184.44092 * 9 7 2 11 11 C 1.46896 * 110.99694 * 287.69259 * 10 9 7 12 Xx 1.59703 * 109.47025 * 128.04180 * 11 10 9 13 12 F 1.36994 * 109.47301 * 53.91979 * 12 11 10 14 13 F 1.37000 * 109.47082 * 173.92705 * 12 11 10 15 14 F 1.37005 * 109.46849 * 293.91745 * 12 11 10 16 15 C 1.46899 * 111.00103 * 163.73799 * 10 9 7 17 16 C 1.53001 * 109.47044 * 65.09626 * 16 10 9 18 17 C 1.53004 * 109.47140 * 179.97438 * 17 16 10 19 18 C 1.52999 * 109.47104 * 300.00629 * 18 17 16 20 19 C 1.52993 * 109.47465 * 59.99650 * 19 18 17 21 20 C 1.52995 * 109.47190 * 300.00085 * 20 19 18 22 21 H 0.97000 * 120.00398 * 359.97438 * 1 2 3 23 22 H 1.08999 * 109.47556 * 64.43928 * 9 7 2 24 23 H 1.08999 * 109.47304 * 304.43749 * 9 7 2 25 24 H 1.09000 * 109.47148 * 248.04118 * 11 10 9 26 25 H 1.09000 * 109.47432 * 8.04120 * 11 10 9 27 26 H 1.08994 * 109.47421 * 305.09891 * 16 10 9 28 27 H 1.08992 * 109.47497 * 299.99933 * 17 16 10 29 28 H 1.09005 * 109.46916 * 60.00343 * 17 16 10 30 29 H 1.08993 * 109.47019 * 180.02562 * 18 17 16 31 30 H 1.09005 * 109.46654 * 60.00528 * 18 17 16 32 31 H 1.09007 * 109.46853 * 299.99201 * 19 18 17 33 32 H 1.09000 * 109.46858 * 179.97438 * 19 18 17 34 33 H 1.09005 * 109.47335 * 179.97438 * 20 19 18 35 34 H 1.09005 * 109.47237 * 60.00420 * 20 19 18 36 35 H 1.09004 * 109.47345 * 299.99743 * 21 20 19 37 36 H 1.09007 * 109.47226 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2022 -3.6136 0.1061 11 6 2.9465 -3.7922 -1.1477 12 9 4.7738 -4.7689 0.1144 13 9 5.2003 -4.1203 -1.9838 14 9 4.9085 -2.5906 -0.3776 15 6 1.5179 -4.8544 0.4934 16 6 0.5561 -5.2752 -0.6196 17 6 -0.1562 -6.5679 -0.2165 18 6 0.8790 -7.6720 0.0076 19 6 1.8408 -7.2513 1.1205 20 6 2.5530 -5.9586 0.7174 21 1 -0.4851 0.8400 0.0004 22 1 0.6851 -2.5919 -0.9274 23 1 0.5665 -2.5234 0.8473 24 1 2.6523 -4.7324 -1.6141 25 1 2.7240 -2.9662 -1.8232 26 1 0.9582 -4.6886 1.4138 27 1 -0.1811 -4.4884 -0.7794 28 1 1.1159 -5.4411 -1.5401 29 1 -0.8411 -6.8678 -1.0095 30 1 -0.7159 -6.4024 0.7041 31 1 1.4386 -7.8375 -0.9131 32 1 0.3715 -8.5928 0.2952 33 1 2.5780 -8.0381 1.2804 34 1 1.2811 -7.0858 2.0411 35 1 3.1128 -6.1241 -0.2032 36 1 3.2386 -5.6591 1.5101 There are 48 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 48 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309665488.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:46 Heat of formation + Delta-G solvation = 84.100730 kcal Electronic energy + Delta-G solvation = -20056.630015 eV Core-core repulsion = 16557.254095 eV Total energy + Delta-G solvation = -3499.375920 eV No. of doubly occupied orbitals = 48 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 253.135 amu Computer time = 12.00 seconds Orbital eigenvalues (eV) -37.87299 -36.56745 -35.52477 -35.41101 -34.17208 -31.43988 -29.25460 -28.00873 -25.53846 -23.22275 -21.54592 -20.75199 -19.13577 -17.50001 -15.26618 -14.26407 -13.77197 -13.17497 -13.06622 -12.68941 -12.13209 -11.84850 -11.34460 -10.84982 -10.71093 -10.46872 -9.96529 -9.77643 -9.75485 -9.70493 -9.61448 -9.22127 -8.88305 -8.73953 -8.42128 -8.17976 -7.51479 -7.20216 -6.90973 -6.56264 -6.25693 -5.85156 -5.56018 -5.41171 -5.17550 -5.00024 -4.30345 -2.94413 -1.09806 3.09621 4.26110 4.37855 4.48629 5.50417 5.84411 6.04649 6.13716 6.26608 6.36630 6.58185 6.68619 6.72925 6.89970 6.91140 7.03094 7.06925 7.17086 7.27879 7.36631 7.46350 7.52141 7.57128 7.72723 8.09151 8.14606 8.23968 8.64324 8.98351 9.06102 9.15532 9.54921 10.34551 10.68579 12.11015 Molecular weight = 253.13amu Principal moments of inertia in cm(-1) A = 0.019855 B = 0.007820 C = 0.006090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.852983 B = 3579.676637 C = 4596.292883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.049 3.951 3 Si 0.903 3.097 4 H -0.274 1.274 5 H -0.295 1.295 6 H -0.276 1.276 7 C -0.498 4.498 8 H 0.093 0.907 9 C 0.196 3.804 10 N -0.514 5.514 11 C 0.496 3.504 12 F -0.589 7.589 13 F -0.642 7.642 14 F -0.419 7.419 15 C 0.092 3.908 16 C -0.162 4.162 17 C -0.106 4.106 18 C -0.119 4.119 19 C -0.118 4.118 20 C -0.113 4.113 21 H 0.254 0.746 22 H 0.005 0.995 23 H 0.045 0.955 24 H 0.087 0.913 25 H 0.110 0.890 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.161 -9.698 1.328 17.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.148 4.148 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.222 1.222 6 H -0.202 1.202 7 C -0.537 4.537 8 H 0.111 0.889 9 C 0.075 3.925 10 N -0.223 5.223 11 C 0.338 3.662 12 F -0.584 7.584 13 F -0.640 7.640 14 F -0.417 7.417 15 C -0.015 4.015 16 C -0.201 4.201 17 C -0.145 4.145 18 C -0.157 4.157 19 C -0.157 4.157 20 C -0.151 4.151 21 H 0.063 0.937 22 H 0.022 0.978 23 H 0.063 0.937 24 H 0.104 0.896 25 H 0.128 0.872 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.049 -9.419 1.845 17.015 hybrid contribution 0.551 0.807 -0.286 1.019 sum -13.498 -8.612 1.559 16.087 Atomic orbital electron populations 1.70007 1.05918 1.26108 1.53872 1.24932 0.94771 0.99229 0.95901 0.86444 0.79074 0.81900 0.79447 1.19896 1.22162 1.20164 1.21867 0.95974 0.89274 1.46541 0.88883 1.19974 0.88962 0.86775 0.96761 1.59129 1.23296 1.06206 1.33645 1.28564 0.55768 0.98730 0.83162 1.99849 1.90509 1.74622 1.93426 1.99923 1.92791 1.82640 1.88644 1.99881 1.96159 1.52938 1.92725 1.21831 0.93413 0.89060 0.97185 1.22518 0.99852 0.97925 0.99795 1.21395 0.97339 0.95035 1.00693 1.21572 0.97285 0.97080 0.99737 1.21626 0.97795 0.98848 0.97387 1.22005 0.96338 0.91079 1.05640 0.93664 0.97779 0.93682 0.89565 0.87230 0.90288 0.91041 0.91791 0.92692 0.92211 0.92069 0.93136 0.92605 0.93016 0.89571 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 6 The total number of SCF iterations 556. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -37.34 13.29 55.43 0.74 -36.61 16 2 C 0.05 2.06 5.46 -17.82 -0.10 1.96 16 3 Si 0.90 33.47 29.54 -169.99 -5.02 28.44 16 4 H -0.27 -10.26 7.11 56.52 0.40 -9.86 16 5 H -0.30 -10.23 7.11 56.52 0.40 -9.83 16 6 H -0.28 -10.31 7.11 56.52 0.40 -9.91 16 7 C -0.50 -22.01 8.60 -34.45 -0.30 -22.31 16 8 H 0.09 4.53 6.35 -52.48 -0.33 4.20 16 9 C 0.20 7.91 3.79 -4.98 -0.02 7.89 16 10 N -0.51 -20.89 4.49 -162.97 -0.73 -21.62 16 11 C 0.50 21.48 5.16 60.06 0.31 21.79 16 12 F -0.59 -32.27 14.62 2.25 0.03 -32.23 16 13 F -0.64 -36.82 18.50 2.25 0.04 -36.78 16 14 F -0.42 -23.95 17.10 2.25 0.04 -23.91 16 15 C 0.09 3.14 2.18 -67.71 -0.15 3.00 16 16 C -0.16 -4.78 4.65 -26.73 -0.12 -4.90 16 17 C -0.11 -2.65 5.92 -26.73 -0.16 -2.81 16 18 C -0.12 -2.97 5.92 -26.74 -0.16 -3.12 16 19 C -0.12 -3.30 5.92 -26.74 -0.16 -3.46 16 20 C -0.11 -3.96 3.71 -26.74 -0.10 -4.06 16 21 H 0.25 9.78 8.31 -40.82 -0.34 9.44 16 22 H 0.00 0.18 7.17 -51.93 -0.37 -0.19 16 23 H 0.05 1.81 7.88 -51.93 -0.41 1.40 16 24 H 0.09 3.38 4.79 -51.93 -0.25 3.13 16 25 H 0.11 4.65 7.18 -51.93 -0.37 4.27 16 26 H 0.08 2.60 7.97 -51.93 -0.41 2.18 16 27 H 0.07 2.09 6.91 -51.93 -0.36 1.73 16 28 H 0.06 1.90 6.11 -51.93 -0.32 1.59 16 29 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.06 1.56 8.14 -51.93 -0.42 1.13 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.09 3.36 5.70 -51.93 -0.30 3.07 16 36 H 0.08 3.30 7.31 -51.93 -0.38 2.92 16 LS Contribution 294.69 15.07 4.44 4.44 Total: -2.00 -107.96 294.69 -6.58 -114.55 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -5.17 Total: 9.74 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -0.95 Total: -6.02 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: 0.00 Total: -58.23 kcal Atomic # 9 Polarization: -93.03 SS G_CDS: 0.11 Total: -92.92 kcal Atomic # 14 Polarization: 33.47 SS G_CDS: -5.02 Total: 28.44 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -107.96 -6.58 -114.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309665488.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.646 kcal (2) G-P(sol) polarization free energy of solvation -107.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -114.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.00 seconds