Wall clock time and date at job start Mon Mar 30 2020 06:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99500 * 2 1 4 4 H 1.48501 * 109.46903 * 239.99992 * 3 2 1 5 5 H 1.48494 * 109.47562 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47174 * 120.00372 * 3 2 1 7 7 C 1.37873 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99687 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00228 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47297 * 184.44092 * 9 7 2 11 11 C 1.46896 * 110.99694 * 287.69259 * 10 9 7 12 Xx 1.59703 * 109.47025 * 128.04180 * 11 10 9 13 12 F 1.36994 * 109.47301 * 53.91979 * 12 11 10 14 13 F 1.37000 * 109.47082 * 173.92705 * 12 11 10 15 14 F 1.37005 * 109.46849 * 293.91745 * 12 11 10 16 15 C 1.46899 * 111.00103 * 163.73799 * 10 9 7 17 16 C 1.53001 * 109.47044 * 65.09626 * 16 10 9 18 17 C 1.53004 * 109.47140 * 179.97438 * 17 16 10 19 18 C 1.52999 * 109.47104 * 300.00629 * 18 17 16 20 19 C 1.52993 * 109.47465 * 59.99650 * 19 18 17 21 20 C 1.52995 * 109.47190 * 300.00085 * 20 19 18 22 21 H 0.97000 * 120.00398 * 359.97438 * 1 2 3 23 22 H 1.08999 * 109.47556 * 64.43928 * 9 7 2 24 23 H 1.08999 * 109.47304 * 304.43749 * 9 7 2 25 24 H 1.09000 * 109.47148 * 248.04118 * 11 10 9 26 25 H 1.09000 * 109.47432 * 8.04120 * 11 10 9 27 26 H 1.08994 * 109.47421 * 305.09891 * 16 10 9 28 27 H 1.08992 * 109.47497 * 299.99933 * 17 16 10 29 28 H 1.09005 * 109.46916 * 60.00343 * 17 16 10 30 29 H 1.08993 * 109.47019 * 180.02562 * 18 17 16 31 30 H 1.09005 * 109.46654 * 60.00528 * 18 17 16 32 31 H 1.09007 * 109.46853 * 299.99201 * 19 18 17 33 32 H 1.09000 * 109.46858 * 179.97438 * 19 18 17 34 33 H 1.09005 * 109.47335 * 179.97438 * 20 19 18 35 34 H 1.09005 * 109.47237 * 60.00420 * 20 19 18 36 35 H 1.09004 * 109.47345 * 299.99743 * 21 20 19 37 36 H 1.09007 * 109.47226 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2022 -3.6136 0.1061 11 6 2.9465 -3.7922 -1.1477 12 9 4.7738 -4.7689 0.1144 13 9 5.2003 -4.1203 -1.9838 14 9 4.9085 -2.5906 -0.3776 15 6 1.5179 -4.8544 0.4934 16 6 0.5561 -5.2752 -0.6196 17 6 -0.1562 -6.5679 -0.2165 18 6 0.8790 -7.6720 0.0076 19 6 1.8408 -7.2513 1.1205 20 6 2.5530 -5.9586 0.7174 21 1 -0.4851 0.8400 0.0004 22 1 0.6851 -2.5919 -0.9274 23 1 0.5665 -2.5234 0.8473 24 1 2.6523 -4.7324 -1.6141 25 1 2.7240 -2.9662 -1.8232 26 1 0.9582 -4.6886 1.4138 27 1 -0.1811 -4.4884 -0.7794 28 1 1.1159 -5.4411 -1.5401 29 1 -0.8411 -6.8678 -1.0095 30 1 -0.7159 -6.4024 0.7041 31 1 1.4386 -7.8375 -0.9131 32 1 0.3715 -8.5928 0.2952 33 1 2.5780 -8.0381 1.2804 34 1 1.2811 -7.0858 2.0411 35 1 3.1128 -6.1241 -0.2032 36 1 3.2386 -5.6591 1.5101 There are 48 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 48 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309665488.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:46 Heat of formation + Delta-G solvation = -15.436052 kcal Electronic energy + Delta-G solvation = -20060.946254 eV Core-core repulsion = 16557.254095 eV Total energy + Delta-G solvation = -3503.692158 eV No. of doubly occupied orbitals = 48 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 253.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.56395 -37.80156 -37.74108 -37.67095 -37.45498 -35.95844 -31.59399 -31.35214 -29.30450 -26.86064 -24.73824 -23.26886 -21.85145 -20.10475 -19.83828 -17.68326 -17.11429 -16.17639 -15.63747 -15.32202 -14.88831 -14.76647 -14.53966 -14.18437 -13.65139 -13.30861 -13.17007 -12.94036 -12.91151 -12.76755 -12.06119 -11.95163 -11.92801 -11.59646 -11.32603 -11.20136 -10.95631 -10.06280 -9.79169 -8.90905 -8.48467 -8.43901 -8.24074 -7.85792 -7.61783 -7.56441 -7.10875 -6.95245 -4.69568 0.67875 1.12861 1.16979 1.25515 1.95040 2.13516 2.75049 3.69194 3.78347 3.84825 4.03867 4.08098 4.17125 4.21042 4.28184 4.37285 4.41618 4.45638 4.51026 4.67005 4.70539 4.82952 5.00040 5.15159 5.20262 5.26682 5.32820 5.43858 5.45563 5.52155 5.63517 5.91785 5.96371 6.41110 7.10229 Molecular weight = 253.13amu Principal moments of inertia in cm(-1) A = 0.019855 B = 0.007820 C = 0.006090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.852983 B = 3579.676637 C = 4596.292883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.072 4.072 3 Si 0.991 3.009 4 H -0.286 1.286 5 H -0.176 1.176 6 H -0.274 1.274 7 C -0.118 4.118 8 H 0.087 0.913 9 C 0.104 3.896 10 N -0.561 5.561 11 C 0.505 3.495 12 F -0.813 7.813 13 F -0.912 7.912 14 F -0.848 7.848 15 C 0.093 3.907 16 C -0.157 4.157 17 C -0.093 4.093 18 C -0.118 4.118 19 C -0.106 4.106 20 C -0.102 4.102 21 H 0.348 0.652 22 H 0.098 0.902 23 H 0.146 0.854 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.118 0.882 27 H 0.103 0.897 28 H 0.033 0.967 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.032 0.968 32 H 0.104 0.896 33 H 0.045 0.955 34 H 0.091 0.909 35 H 0.010 0.990 36 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.556 4.471 5.484 36.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.254 5.254 2 C -0.281 4.281 3 Si 0.808 3.192 4 H -0.212 1.212 5 H -0.096 1.096 6 H -0.199 1.199 7 C -0.138 4.138 8 H 0.105 0.895 9 C -0.018 4.018 10 N -0.277 5.277 11 C 0.353 3.647 12 F -0.808 7.808 13 F -0.909 7.909 14 F -0.844 7.844 15 C -0.012 4.012 16 C -0.196 4.196 17 C -0.131 4.131 18 C -0.155 4.155 19 C -0.144 4.144 20 C -0.141 4.141 21 H 0.163 0.837 22 H 0.115 0.885 23 H 0.163 0.837 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.136 0.864 27 H 0.121 0.879 28 H 0.052 0.948 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.051 0.949 32 H 0.123 0.877 33 H 0.064 0.936 34 H 0.109 0.891 35 H 0.029 0.971 36 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -35.356 4.638 5.959 36.153 hybrid contribution 2.424 0.244 -0.685 2.531 sum -32.932 4.882 5.274 33.707 Atomic orbital electron populations 1.69768 1.06935 1.37021 1.11684 1.26867 0.97284 1.04449 0.99482 0.85126 0.79657 0.74502 0.79916 1.21165 1.09621 1.19947 1.25888 1.00101 0.95329 0.92477 0.89504 1.21407 0.91519 0.85208 1.03637 1.59527 1.24735 1.08937 1.34544 1.26964 0.56934 0.96124 0.84682 1.99849 1.89986 1.96347 1.94613 1.99918 1.92226 1.99805 1.98994 1.99876 1.90157 1.95907 1.98460 1.22082 0.93010 0.85908 1.00227 1.22500 0.98423 1.01825 0.96848 1.21417 0.96701 0.91299 1.03636 1.21608 0.96759 1.00086 0.97039 1.21585 0.98192 0.94292 1.00360 1.21647 0.96087 0.96279 1.00042 0.83722 0.88548 0.83727 0.91030 0.91848 0.86401 0.87910 0.94808 0.88548 0.88531 0.94922 0.87725 0.93638 0.89068 0.97127 0.97517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.60 -28.76 13.29 21.45 0.28 -28.47 16 2 C -0.07 -4.08 5.46 84.65 0.46 -3.62 16 3 Si 0.99 50.38 29.54 68.60 2.03 52.41 16 4 H -0.29 -16.62 7.11 99.48 0.71 -15.91 16 5 H -0.18 -6.60 7.11 99.48 0.71 -5.89 16 6 H -0.27 -15.26 7.11 99.48 0.71 -14.55 16 7 C -0.12 -8.63 8.60 25.60 0.22 -8.41 16 8 H 0.09 8.03 6.35 -2.91 -0.02 8.01 16 9 C 0.10 7.00 3.79 85.55 0.32 7.33 16 10 N -0.56 -47.83 4.49 -669.53 -3.01 -50.84 16 11 C 0.51 51.94 5.16 127.69 0.66 52.60 16 12 F -0.81 -116.75 14.62 44.97 0.66 -116.09 16 13 F -0.91 -138.66 18.50 44.97 0.83 -137.83 16 14 F -0.85 -124.06 17.10 44.97 0.77 -123.29 16 15 C 0.09 6.50 2.18 44.92 0.10 6.60 16 16 C -0.16 -8.81 4.65 30.60 0.14 -8.67 16 17 C -0.09 -4.08 5.92 30.60 0.18 -3.90 16 18 C -0.12 -5.84 5.92 30.59 0.18 -5.65 16 19 C -0.11 -6.40 5.92 30.59 0.18 -6.22 16 20 C -0.10 -8.42 3.71 30.59 0.11 -8.31 16 21 H 0.35 13.49 8.31 -92.71 -0.77 12.72 16 22 H 0.10 5.78 7.17 -2.39 -0.02 5.77 16 23 H 0.15 8.28 7.88 -2.39 -0.02 8.26 16 24 H 0.07 6.97 4.79 -2.39 -0.01 6.96 16 25 H 0.06 6.16 7.18 -2.39 -0.02 6.14 16 26 H 0.12 7.09 7.97 -2.39 -0.02 7.07 16 27 H 0.10 4.88 6.91 -2.39 -0.02 4.86 16 28 H 0.03 2.12 6.11 -2.38 -0.01 2.11 16 29 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 30 H 0.10 3.61 8.14 -2.38 -0.02 3.59 16 31 H 0.03 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.10 4.14 8.14 -2.39 -0.02 4.12 16 33 H 0.04 2.76 8.14 -2.38 -0.02 2.74 16 34 H 0.09 4.68 8.14 -2.38 -0.02 4.66 16 35 H 0.01 0.99 5.70 -2.39 -0.01 0.97 16 36 H 0.01 0.57 7.31 -2.38 -0.02 0.56 16 Total: -2.00 -340.06 294.69 5.19 -334.87 By element: Atomic # 1 Polarization: 46.42 SS G_CDS: 1.07 Total: 47.49 kcal Atomic # 6 Polarization: 19.19 SS G_CDS: 2.56 Total: 21.75 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -2.72 Total: -79.31 kcal Atomic # 9 Polarization: -379.47 SS G_CDS: 2.26 Total: -377.21 kcal Atomic # 14 Polarization: 50.38 SS G_CDS: 2.03 Total: 52.41 kcal Total: -340.06 5.19 -334.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309665488.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 319.429 kcal (2) G-P(sol) polarization free energy of solvation -340.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -334.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds