Wall clock time and date at job start Mon Mar 30 2020 07:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46984 * 2 1 4 4 O 1.42906 * 109.46939 * 119.99971 * 2 1 3 5 5 C 1.35678 * 117.00209 * 90.00191 * 4 2 1 6 6 N 1.32277 * 119.68256 * 359.97438 * 5 4 2 7 7 C 1.31934 * 121.64699 * 179.97438 * 6 5 4 8 8 C 1.38082 * 120.83308 * 0.02562 * 7 6 5 9 9 C 1.38791 * 119.28941 * 359.97438 * 8 7 6 10 10 C 1.38422 * 118.48140 * 0.02562 * 9 8 7 11 11 C 1.50707 * 120.43890 * 180.02562 * 10 9 8 12 12 N 1.46903 * 109.46868 * 259.99937 * 11 10 9 13 13 C 1.46895 * 110.99930 * 180.02562 * 12 11 10 14 14 H 1.09004 * 109.47392 * 34.99470 * 13 12 11 15 15 C 1.53002 * 109.46764 * 274.99859 * 13 12 11 16 16 C 1.50696 * 109.47442 * 154.99939 * 13 12 11 17 17 H 1.08005 * 119.99919 * 359.97438 * 16 13 12 18 18 C 1.37876 * 120.00108 * 179.97438 * 16 13 12 19 19 N 1.31510 * 120.00168 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 120.00024 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47313 * 89.99542 * 20 18 16 22 22 H 1.48495 * 109.47251 * 210.00133 * 20 18 16 23 23 H 1.48500 * 109.46982 * 329.99771 * 20 18 16 24 24 H 1.08990 * 109.47684 * 300.00004 * 1 2 3 25 25 H 1.08996 * 109.46949 * 60.00566 * 1 2 3 26 26 H 1.09008 * 109.46976 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47361 * 239.99855 * 2 1 3 28 28 H 1.09005 * 109.47290 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47232 * 299.99767 * 3 2 1 30 30 H 1.09002 * 109.47190 * 59.99751 * 3 2 1 31 31 H 1.08004 * 119.58104 * 180.02562 * 7 6 5 32 32 H 1.08003 * 120.35802 * 179.97438 * 8 7 6 33 33 H 1.08000 * 120.75891 * 180.02562 * 9 8 7 34 34 H 1.08996 * 109.46973 * 19.99730 * 11 10 9 35 35 H 1.08994 * 109.47004 * 140.00011 * 11 10 9 36 36 H 1.00896 * 111.00427 * 56.04684 * 12 11 10 37 37 H 1.09004 * 109.47302 * 299.99665 * 15 13 12 38 38 H 1.08995 * 109.47315 * 60.00054 * 15 13 12 39 39 H 1.08997 * 109.47096 * 179.97438 * 15 13 12 40 40 H 0.97002 * 120.00236 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2117 -2.0110 1.0654 6 7 1.9691 -2.6259 -0.0804 7 6 2.1557 -3.9242 -0.2223 8 6 2.6141 -4.6925 0.8295 9 6 2.8804 -4.0849 2.0486 10 6 2.6745 -2.7210 2.1654 11 6 2.9501 -2.0161 3.4686 12 7 1.6868 -1.8062 4.1884 13 6 1.9169 -1.1194 5.4663 14 1 2.7338 -0.4064 5.3537 15 6 2.2815 -2.1473 6.5393 16 6 0.6647 -0.3880 5.8762 17 1 -0.2141 -0.4290 5.2497 18 6 0.6409 0.3334 7.0509 19 7 1.7109 0.3829 7.8140 20 14 -0.9111 1.2406 7.5586 21 1 -1.7614 0.3441 8.3823 22 1 -0.5454 2.4420 8.3511 23 1 -1.6602 1.6568 6.3459 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.9472 -4.3920 -1.1732 32 1 2.7637 -5.7548 0.7049 33 1 3.2402 -4.6629 2.8869 34 1 3.6181 -2.6256 4.0771 35 1 3.4186 -1.0526 3.2684 36 1 1.2014 -2.6795 4.3292 37 1 1.4647 -2.8603 6.6520 38 1 3.1873 -2.6763 6.2429 39 1 2.4527 -1.6377 7.4875 40 1 1.6940 0.8902 8.6406 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042391727.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:15 Heat of formation + Delta-G solvation = -8.746276 kcal Electronic energy + Delta-G solvation = -20236.924658 eV Core-core repulsion = 17244.871852 eV Total energy + Delta-G solvation = -2992.052806 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.50620 -37.97332 -36.09649 -33.41206 -32.90110 -31.77101 -30.28184 -28.01876 -27.09047 -25.16855 -24.61728 -23.60915 -21.59955 -20.82253 -20.12512 -18.20790 -16.73637 -16.32696 -15.52145 -15.27689 -14.78355 -14.48823 -14.31178 -13.89650 -13.40038 -13.27887 -12.94902 -12.78188 -12.70457 -12.14936 -12.11698 -11.91250 -11.75314 -11.63098 -11.20606 -10.87785 -10.77421 -10.71539 -10.56197 -10.39693 -10.10763 -9.92417 -9.55276 -9.37250 -8.94332 -8.31291 -8.13382 -7.13705 -5.93246 -3.95648 1.32917 1.47286 3.32373 3.35775 3.41888 3.47229 3.95077 4.43182 4.49440 4.94840 5.03891 5.13006 5.15173 5.20195 5.33091 5.38362 5.40432 5.62730 5.68370 5.72322 5.89801 5.92713 5.97067 5.99490 6.23383 6.30656 6.34048 6.40958 6.49581 6.67112 6.73870 6.87733 7.13604 7.41811 7.61529 7.78016 7.94253 8.05591 8.32976 8.60669 8.67800 9.11634 9.69218 11.13878 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.017985 B = 0.005771 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.459013 B = 4851.005284 C = 5894.933283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.082 3.918 3 C -0.151 4.151 4 O -0.277 6.277 5 C 0.345 3.655 6 N -0.547 5.547 7 C 0.128 3.872 8 C -0.218 4.218 9 C -0.044 4.044 10 C -0.141 4.141 11 C 0.111 3.889 12 N -0.672 5.672 13 C 0.212 3.788 14 H 0.034 0.966 15 C -0.169 4.169 16 C -0.489 4.489 17 H 0.062 0.938 18 C 0.054 3.946 19 N -0.899 5.899 20 Si 0.896 3.104 21 H -0.283 1.283 22 H -0.288 1.288 23 H -0.274 1.274 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.152 0.848 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.026 0.974 35 H 0.077 0.923 36 H 0.322 0.678 37 H 0.027 0.973 38 H 0.004 0.996 39 H 0.089 0.911 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.475 -6.321 -15.389 16.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.025 3.975 3 C -0.208 4.208 4 O -0.182 6.182 5 C 0.165 3.835 6 N -0.271 5.271 7 C -0.028 4.028 8 C -0.239 4.239 9 C -0.070 4.070 10 C -0.144 4.144 11 C -0.019 4.019 12 N -0.301 5.301 13 C 0.105 3.895 14 H 0.052 0.948 15 C -0.228 4.228 16 C -0.528 4.528 17 H 0.080 0.920 18 C -0.146 4.146 19 N -0.539 5.539 20 Si 0.724 3.276 21 H -0.209 1.209 22 H -0.214 1.214 23 H -0.199 1.199 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.170 0.830 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.044 0.956 35 H 0.096 0.904 36 H 0.139 0.861 37 H 0.046 0.954 38 H 0.023 0.977 39 H 0.107 0.893 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.111 -4.916 -16.032 16.901 hybrid contribution -0.191 -0.871 1.415 1.672 sum 1.920 -5.786 -14.617 15.838 Atomic orbital electron populations 1.22181 0.95018 1.02708 1.02453 1.22272 0.94506 0.92745 0.87934 1.21895 1.01685 0.94251 1.02974 1.86503 1.79059 1.15331 1.37357 1.19617 0.90058 0.84972 0.88804 1.67269 1.22340 1.12592 1.24908 1.22261 0.93934 0.88059 0.98557 1.21850 1.06269 1.01252 0.94505 1.21368 0.95081 0.93029 0.97533 1.20125 1.04346 0.93640 0.96301 1.20643 0.93379 0.98633 0.89254 1.60815 1.18384 1.26126 1.24820 1.19175 0.97119 0.91292 0.81910 0.94805 1.22444 0.96238 0.98950 1.05216 1.21150 0.98257 1.28595 1.04831 0.92016 1.24936 0.96306 0.96792 0.96535 1.69881 1.28024 1.42351 1.13670 0.86528 0.83391 0.79199 0.78453 1.20912 1.21408 1.19910 0.91391 0.91784 0.92247 0.89994 0.92115 0.90976 0.91123 0.83039 0.85115 0.84677 0.95558 0.90447 0.86145 0.95402 0.97689 0.89252 0.93157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 9.53 37.16 0.35 -1.93 16 2 C 0.08 1.18 3.11 -26.73 -0.08 1.10 16 3 C -0.15 -1.86 9.56 37.16 0.36 -1.51 16 4 O -0.28 -4.95 9.01 -18.73 -0.17 -5.12 16 5 C 0.35 5.89 7.43 -17.13 -0.13 5.76 16 6 N -0.55 -8.30 8.65 -13.33 -0.12 -8.41 16 7 C 0.13 1.57 11.18 -17.56 -0.20 1.37 16 8 C -0.22 -2.52 10.11 -39.43 -0.40 -2.92 16 9 C -0.04 -0.60 9.81 -39.31 -0.39 -0.98 16 10 C -0.14 -2.34 5.42 -104.32 -0.57 -2.90 16 11 C 0.11 2.09 5.30 -4.97 -0.03 2.07 16 12 N -0.67 -14.78 6.22 -109.22 -0.68 -15.45 16 13 C 0.21 5.43 2.57 -68.87 -0.18 5.25 16 14 H 0.03 0.95 7.80 -51.93 -0.40 0.55 16 15 C -0.17 -4.10 8.94 37.16 0.33 -3.76 16 16 C -0.49 -13.81 8.84 -34.44 -0.30 -14.11 16 17 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 18 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 19 N -0.90 -26.03 11.32 55.43 0.63 -25.40 16 20 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 24 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 27 H 0.08 1.14 6.98 -51.93 -0.36 0.77 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.15 1.34 8.06 -52.48 -0.42 0.92 16 32 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 33 H 0.14 1.57 8.06 -52.49 -0.42 1.14 16 34 H 0.03 0.47 7.33 -51.93 -0.38 0.09 16 35 H 0.08 1.56 7.78 -51.93 -0.40 1.16 16 36 H 0.32 6.81 8.46 -39.29 -0.33 6.48 16 37 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 38 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 39 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 332.32 15.07 5.01 5.01 Total: -1.00 -30.46 332.32 -8.03 -38.48 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -6.36 Total: 5.19 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -1.32 Total: -11.14 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.17 Total: -49.27 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.17 Total: -5.12 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.46 -8.03 -38.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042391727.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.738 kcal (2) G-P(sol) polarization free energy of solvation -30.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds