Wall clock time and date at job start Mon Mar 30 2020 06:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47121 * 2 1 4 4 N 1.46894 * 109.47124 * 120.00003 * 2 1 3 5 5 C 1.46900 * 111.00022 * 167.67387 * 4 2 1 6 6 C 1.50707 * 109.47003 * 288.18787 * 5 4 2 7 7 H 1.07993 * 120.00001 * 4.71170 * 6 5 4 8 8 C 1.37878 * 120.00151 * 184.71332 * 6 5 4 9 9 N 1.31515 * 119.99757 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00207 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47007 * 59.99918 * 10 8 6 12 12 H 1.48498 * 109.47442 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47265 * 300.00201 * 10 8 6 14 14 C 1.46903 * 111.00385 * 291.62411 * 4 2 1 15 15 C 1.50696 * 109.47179 * 163.58012 * 14 4 2 16 16 C 1.38133 * 119.98908 * 102.46089 * 15 14 4 17 17 C 1.38839 * 119.98097 * 179.78844 * 16 15 14 18 18 N 1.39945 * 120.01909 * 180.23180 * 17 16 15 19 19 C 1.38879 * 119.96095 * 0.48659 * 17 16 15 20 20 C 1.38089 * 119.98300 * 359.74436 * 19 17 16 21 21 C 1.38678 * 119.99490 * 282.73343 * 15 14 4 22 22 O 1.36007 * 119.97836 * 0.02562 * 21 15 14 23 23 H 1.09006 * 109.47322 * 306.25055 * 1 2 3 24 24 H 1.09008 * 109.47348 * 66.24641 * 1 2 3 25 25 H 1.08994 * 109.47485 * 186.24620 * 1 2 3 26 26 H 1.08999 * 109.47171 * 240.00621 * 2 1 3 27 27 H 1.09000 * 109.46908 * 184.83707 * 3 2 1 28 28 H 1.09001 * 109.47226 * 304.83795 * 3 2 1 29 29 H 1.08995 * 109.46890 * 64.83651 * 3 2 1 30 30 H 1.08996 * 109.47496 * 48.18635 * 5 4 2 31 31 H 1.09008 * 109.47204 * 168.18894 * 5 4 2 32 32 H 0.97002 * 119.99976 * 179.97438 * 9 8 6 33 33 H 1.08992 * 109.47075 * 283.58940 * 14 4 2 34 34 H 1.09006 * 109.46736 * 43.58464 * 14 4 2 35 35 H 1.08006 * 120.00731 * 0.02562 * 16 15 14 36 36 H 0.97000 * 120.00011 * 180.24573 * 18 17 16 37 37 H 0.97007 * 119.99602 * 0.25699 * 18 17 16 38 38 H 1.08000 * 120.00670 * 179.72399 * 19 17 16 39 39 H 1.07994 * 119.99147 * 180.02562 * 20 19 17 40 40 H 0.96697 * 113.99471 * 95.05140 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.4583 -0.9709 1.0961 6 6 3.6869 -2.0645 0.0847 7 1 2.8568 -2.4554 -0.4849 8 6 4.9559 -2.5660 -0.1135 9 7 5.9667 -2.0903 0.5805 10 14 5.2392 -3.9221 -1.3665 11 1 4.8271 -3.4469 -2.7118 12 1 6.6796 -4.2822 -1.3891 13 1 4.4360 -5.1147 -0.9954 14 6 1.7186 0.0792 2.4127 15 6 1.8575 -0.8104 3.6211 16 6 2.9827 -0.7223 4.4176 17 6 3.1084 -1.5389 5.5334 18 7 4.2458 -1.4470 6.3436 19 6 2.1074 -2.4507 5.8420 20 6 0.9854 -2.5407 5.0420 21 6 0.8584 -1.7211 3.9301 22 8 -0.2463 -1.8114 3.1419 23 1 -0.3634 0.6077 0.8288 24 1 -0.3634 0.4140 -0.9407 25 1 -0.3634 -1.0215 0.1118 26 1 1.8933 -0.5137 -0.8900 27 1 3.1265 1.4437 -0.0867 28 1 1.6076 1.9808 -0.8435 29 1 1.7491 1.9307 0.9301 30 1 3.9812 -0.0684 0.7798 31 1 3.8375 -1.2891 2.0673 32 1 6.8594 -2.4434 0.4414 33 1 2.4144 0.9141 2.4941 34 1 0.6988 0.4601 2.3572 35 1 3.7626 -0.0158 4.1745 36 1 4.3350 -2.0201 7.1211 37 1 4.9448 -0.8099 6.1277 38 1 2.2065 -3.0893 6.7073 39 1 0.2067 -3.2494 5.2821 40 1 -0.1923 -2.5015 2.4667 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042528583.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:02 Heat of formation + Delta-G solvation = -41.748878 kcal Electronic energy + Delta-G solvation = -20763.042951 eV Core-core repulsion = 17769.559045 eV Total energy + Delta-G solvation = -2993.483906 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.85400 -38.99509 -37.73808 -34.85453 -34.57589 -33.19545 -31.54305 -29.30540 -28.21253 -27.95745 -26.17076 -23.95969 -23.31595 -22.20539 -20.25672 -18.85998 -18.32583 -17.83029 -17.65955 -16.73805 -16.38005 -16.09724 -15.79023 -15.43717 -14.92842 -14.67069 -14.50642 -13.99207 -13.95092 -13.75201 -13.56658 -13.19332 -12.96786 -12.77305 -12.67179 -12.58469 -12.48806 -12.26758 -11.97364 -11.66819 -11.45066 -11.28306 -11.01943 -10.94082 -10.54191 -9.65149 -8.86213 -8.20284 -8.13677 -6.22148 0.52406 0.68835 1.40502 1.43145 1.50485 2.42352 2.82127 3.10529 3.17756 3.49453 3.78282 3.99597 4.03863 4.16691 4.34190 4.36336 4.53497 4.61733 4.65619 4.77600 4.83936 4.89955 5.01537 5.04824 5.12543 5.16708 5.31785 5.33114 5.43378 5.44447 5.52298 5.59622 5.71603 5.80131 5.94758 6.16486 6.53572 6.61712 6.73854 6.93893 7.07154 7.11869 7.45884 8.95772 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.013636 B = 0.007908 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.898234 B = 3539.767059 C = 4592.466490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.074 3.926 3 C -0.174 4.174 4 N -0.519 5.519 5 C 0.209 3.791 6 C -0.514 4.514 7 H 0.059 0.941 8 C 0.003 3.997 9 N -0.933 5.933 10 Si 0.961 3.039 11 H -0.269 1.269 12 H -0.286 1.286 13 H -0.270 1.270 14 C 0.102 3.898 15 C -0.058 4.058 16 C -0.192 4.192 17 C 0.200 3.800 18 N -0.871 5.871 19 C -0.190 4.190 20 C -0.106 4.106 21 C 0.053 3.947 22 O -0.498 6.498 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.027 0.973 28 H 0.075 0.925 29 H 0.058 0.942 30 H -0.041 1.041 31 H 0.011 0.989 32 H 0.261 0.739 33 H 0.019 0.981 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.408 0.592 37 H 0.401 0.599 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.800 1.749 8.181 12.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.034 4.034 3 C -0.233 4.233 4 N -0.242 5.242 5 C 0.083 3.917 6 C -0.552 4.552 7 H 0.077 0.923 8 C -0.195 4.195 9 N -0.574 5.574 10 Si 0.786 3.214 11 H -0.194 1.194 12 H -0.211 1.211 13 H -0.195 1.195 14 C -0.026 4.026 15 C -0.060 4.060 16 C -0.216 4.216 17 C 0.095 3.905 18 N -0.412 5.412 19 C -0.213 4.213 20 C -0.125 4.125 21 C 0.006 3.994 22 O -0.308 6.308 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.094 0.906 29 H 0.077 0.923 30 H -0.023 1.023 31 H 0.029 0.971 32 H 0.069 0.931 33 H 0.037 0.963 34 H 0.109 0.891 35 H 0.123 0.877 36 H 0.238 0.762 37 H 0.229 0.771 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -9.104 1.745 8.553 12.613 hybrid contribution 1.836 -0.084 -0.826 2.015 sum -7.268 1.661 7.727 10.737 Atomic orbital electron populations 1.21714 0.92693 1.02224 1.01610 1.21686 0.96394 0.91970 0.93362 1.22368 1.00118 0.98382 1.02406 1.62249 1.17086 1.44190 1.00702 1.19379 0.83301 0.93238 0.95831 1.21435 0.93284 1.19529 1.20981 0.92251 1.25811 0.95903 0.99421 0.98363 1.70083 1.00136 1.44413 1.42753 0.85570 0.76815 0.79544 0.79485 1.19394 1.21143 1.19478 1.20866 1.00606 0.92670 0.88436 1.19961 0.92889 0.97925 0.95189 1.20432 0.98904 1.04489 0.97729 1.17859 0.88511 0.93739 0.90423 1.42395 1.20597 1.46650 1.31517 1.20660 0.94510 1.02390 1.03707 1.21383 0.98077 0.98421 0.94636 1.18059 0.88492 0.98747 0.94089 1.84683 1.36070 1.60960 1.49061 0.92609 0.91247 0.92258 0.91915 0.95334 0.90642 0.92343 1.02310 0.97065 0.93070 0.96295 0.89140 0.87736 0.76233 0.77084 0.83506 0.83607 0.75175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.66 9.07 71.98 0.65 -3.01 16 2 C 0.07 2.80 2.80 44.92 0.13 2.92 16 3 C -0.17 -6.03 8.54 71.98 0.62 -5.42 16 4 N -0.52 -22.09 4.33 -880.06 -3.81 -25.90 16 5 C 0.21 11.10 4.48 85.56 0.38 11.49 16 6 C -0.51 -29.20 8.50 25.60 0.22 -28.98 16 7 H 0.06 3.31 7.43 -2.91 -0.02 3.29 16 8 C 0.00 0.15 5.46 84.65 0.46 0.61 16 9 N -0.93 -56.53 13.29 21.45 0.28 -56.24 16 10 Si 0.96 44.81 29.54 68.60 2.03 46.84 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 13 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 14 C 0.10 3.89 3.35 85.56 0.29 4.17 16 15 C -0.06 -2.20 4.80 -19.79 -0.09 -2.29 16 16 C -0.19 -7.14 8.45 22.39 0.19 -6.95 16 17 C 0.20 6.26 6.76 38.14 0.26 6.52 16 18 N -0.87 -20.99 9.10 -51.26 -0.47 -21.46 16 19 C -0.19 -5.35 9.89 22.39 0.22 -5.13 16 20 C -0.11 -3.14 9.98 22.35 0.22 -2.92 16 21 C 0.05 1.82 6.68 22.49 0.15 1.97 16 22 O -0.50 -15.73 12.78 -93.64 -1.20 -16.93 16 23 H 0.05 1.55 6.62 -2.38 -0.02 1.53 16 24 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 25 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.06 2.68 6.98 -2.39 -0.02 2.66 16 27 H 0.03 1.14 6.77 -2.39 -0.02 1.12 16 28 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.06 1.89 6.39 -2.39 -0.02 1.88 16 30 H -0.04 -2.36 6.47 -2.39 -0.02 -2.38 16 31 H 0.01 0.65 6.36 -2.38 -0.02 0.64 16 32 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 33 H 0.02 0.75 6.90 -2.39 -0.02 0.74 16 34 H 0.09 3.17 5.96 -2.38 -0.01 3.15 16 35 H 0.10 4.03 8.02 -2.91 -0.02 4.01 16 36 H 0.41 7.36 8.84 -92.71 -0.82 6.54 16 37 H 0.40 9.16 8.84 -92.70 -0.82 8.34 16 38 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 39 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 40 H 0.39 10.82 9.06 -74.06 -0.67 10.15 16 Total: -1.00 -67.20 322.61 -0.71 -67.90 By element: Atomic # 1 Polarization: 34.03 SS G_CDS: -1.24 Total: 32.79 kcal Atomic # 6 Polarization: -30.70 SS G_CDS: 3.69 Total: -27.01 kcal Atomic # 7 Polarization: -99.61 SS G_CDS: -3.99 Total: -103.59 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -1.20 Total: -16.93 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -67.20 -0.71 -67.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042528583.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.154 kcal (2) G-P(sol) polarization free energy of solvation -67.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds